Rroxscaffold_5G00377710

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001480
Physical Location & Seq
Reverse (-)
58322314 .. 58324858
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377710.1

Sequence Viewer

Length: 1167 bp
ATGTATGTAACAAGGCCTCTGTCTATGTATAGAAGGTCTCCCGATTCACTAGCACTACCAACGCCGGAAGGTCCAAATTCCGGTTATCTTGTACTACACGATGAAGAATCAGATGAGACTACCTGTTTCGGATGTTGCAAAGATCCTCAGGTGCAAGGCTTGCCTTTCCCTCAGAACAAGAATCTCACAGTTGAATATTCCTCAGATGATGATGATGTTGCCTTCATTCCTGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGATACGCCGGAATGGGAGACACAGAGGGAAAGTGTACACAAATTCAAAGGAAGAGGACATGGTAGATTGCTGTTTTGGCAAAGCTGTTCAAGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAGGAAGCACCGCGGCTACTTTACTGCCAAGGCTGTTGCTTCAGATGGGTTTCCTCCTTCCTTTTTGAGGAGAAAAGATTGGACAGTGACCATGAACACACCCCATCATTATCAACTAGGTGAAGCTCCAGGACTCAACGCTTCGAAGCGATCAGGCCTTCCTGGTTTCGACTTTCCACTGTCCAAAGATTGTTCTGAGGCTATGGTAGTTGGCAAGTGGCACTGTCCTTTCTTGTTTATCAAGGAAGGGGGACTGGAGTTGAAGCACCAAATGAAGCACTGCATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAATACAATGAAGGAAAGAGCAACAATGCTGTGTTTGTGGATGCATTTGTTCAAAGAGAGGCGGTATTTATTGCTGGAAGAGAAGCTTATTCCGATAATCTAGACAGAGTTCATATCGTCGATGATTTCATGTGGTTTAAGAGCTCTGATGGTGGGGGAGGAGAAAGGAGTGTAGGGTTGAGCATGAAAATTATTGAGAGAATGAAGTGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGAGAAAAGAAAAGTGCGAGTGGAGAAAACCGAAAAGTTTGGGGGAACTGATGGTTGGAATAGATTTTCTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGAGAATGGATGGAAGCTTAGCACTATTGGCATATGATTTCAAGCACACTCACCAGATTAGGTGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

388

Amino Acids

44.7

Weight (kDa)

7.58

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 115 8.5e-38 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 432
AciI CCGC 3 cut(s) 430, 432, 812
AclWI GGATC 3 cut(s) 137, 377, 390
AcsI RAATTY 3 cut(s) 76, 310, 741
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 2 cut(s) 93, 305
AfiI CCNNNNNNNGG 2 cut(s) 80, 486
AgsI TTSAA 7 cut(s) 194, 315, 359, 682, 803, 1090, 1132
AjnI CCWGG 2 cut(s) 547, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 1027, 1059
AluBI AGCT 5 cut(s) 353, 545, 836, 894, 1107
AluI AGCT 5 cut(s) 353, 545, 836, 894, 1107
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 4 cut(s) 42, 110, 280, 712
AlwI GGATC 3 cut(s) 137, 377, 390
AoxI GGCC 2 cut(s) 14, 574
ApoI RAATTY 3 cut(s) 76, 310, 741
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 551, 1133
AsuII TTCGAA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 147
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 896
BccI CCATC 8 cut(s) 394, 458, 531, 726, 893, 972, 1034, 1094
BciT130I CCWGG 2 cut(s) 549, 582
BcoDI GTCTC 4 cut(s) 42, 110, 280, 712
BfaI CTAG 3 cut(s) 50, 536, 851
BisI GCNGC 1 cut(s) 433
BlpI GCTNAGC 1 cut(s) 1108
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 2 cut(s) 549, 582
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 2 cut(s) 549, 582
BmsI GCATC 1 cut(s) 781
BpmI CTGGAG 3 cut(s) 531, 695, 743
Bpu1102I GCTNAGC 1 cut(s) 1108
Bpu14I TTCGAA 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 419, 430, 447
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 486
Bse1I ACTGG 2 cut(s) 678, 726
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 549, 582
BseDI CCNNGG 3 cut(s) 419, 430, 447
BseGI GGATG 4 cut(s) 137, 796, 983, 1105
BseLI CCNNNNNNNGG 2 cut(s) 80, 486
BseMII CTCAG 4 cut(s) 161, 185, 216, 606
BseNI ACTGG 2 cut(s) 678, 726
BseRI GAGGAG 2 cut(s) 502, 924
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 16, 576
BsiHKAI GWGCWC 1 cut(s) 896
BsiSI CCGG 3 cut(s) 65, 81, 277
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 80, 486
BsmAI GTCTC 4 cut(s) 42, 110, 280, 712
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 2 cut(s) 16, 576
Bso31I GGTCTC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 896
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 142, 382, 569
Bsp1720I GCTNAGC 1 cut(s) 1108
BspACI CCGC 3 cut(s) 430, 432, 812
BspANI GGCC 2 cut(s) 16, 576
BspCNI CTCAG 4 cut(s) 160, 184, 215, 607
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 3 cut(s) 137, 377, 390
BspT104I TTCGAA 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 2 cut(s) 678, 726
BssECI CCNNGG 3 cut(s) 419, 430, 447
BssMI GATC 3 cut(s) 142, 382, 569
BssT1I CCWWGG 2 cut(s) 419, 447
Bst2UI CCWGG 2 cut(s) 549, 582
Bst4CI ACNGT 4 cut(s) 190, 505, 600, 644
Bst6I CTCTTC 3 cut(s) 315, 823, 1085
BstAPI GCANNNNNTGC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 5 cut(s) 147, 171, 202, 615, 1108
BstDSI CCRYGG 1 cut(s) 430
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 4 cut(s) 137, 796, 983, 1105
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 3 cut(s) 145, 385, 572
BstMAI GTCTC 4 cut(s) 42, 110, 280, 712
BstMBI GATC 3 cut(s) 142, 382, 569
BstMWI GCNNNNNNNGC 3 cut(s) 160, 345, 1118
BstNI CCWGG 2 cut(s) 549, 582
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 547, 580
BstUI CGCG 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 142, 382
BstYI RGATCY 2 cut(s) 142, 382
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 16, 576
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 137, 796, 983, 1105
BtsI GCAGTG 1 cut(s) 697
BtsIMutI CAGTG 4 cut(s) 510, 596, 640, 697
Cac8I GCNNGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 71
Cfr42I CCGCGG 1 cut(s) 433
Csp6I GTAC 2 cut(s) 92, 304
CviAII CATG 6 cut(s) 266, 328, 511, 703, 880, 934
CviQI GTAC 2 cut(s) 92, 304
DdeI CTNAG 5 cut(s) 147, 171, 202, 615, 1108
DpnI GATC 3 cut(s) 144, 384, 571
DpnII GATC 3 cut(s) 142, 382, 569
Eam1104I CTCTTC 3 cut(s) 315, 823, 1085
EarI CTCTTC 3 cut(s) 315, 823, 1085
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 2 cut(s) 419, 447
Eco147I AGGCCT 2 cut(s) 16, 576
Eco24I GRGCYC 1 cut(s) 896
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 894
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 894
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 547, 580
EcoT14I CCWWGG 2 cut(s) 419, 447
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 2 cut(s) 419, 447
FaeI CATG 6 cut(s) 269, 331, 514, 706, 883, 937
FalI AAGNNNNNCTT 2 cut(s) 820, 852
FaqI GGGAC 1 cut(s) 684
FatI CATG 6 cut(s) 265, 327, 510, 702, 879, 933
FauNDI CATATG 1 cut(s) 1123
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 4 cut(s) 144, 803, 990, 1112
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 3 cut(s) 50, 536, 851
GluI GCNGC 1 cut(s) 433
GsuI CTGGAG 3 cut(s) 531, 695, 743
HaeIII GGCC 2 cut(s) 16, 576
HapII CCGG 3 cut(s) 65, 81, 277
Hin1II CATG 6 cut(s) 269, 331, 514, 706, 883, 937
HindIII AAGCTT 2 cut(s) 834, 1105
HinfI GANTC 4 cut(s) 44, 107, 181, 552
HpaII CCGG 3 cut(s) 65, 81, 277
HphI GGTGA 2 cut(s) 551, 1133
Hpy166II GTNNAC 2 cut(s) 304, 306
Hpy188I TCNGA 9 cut(s) 112, 131, 174, 205, 391, 463, 616, 844, 898
Hpy188III TCNNGA 4 cut(s) 41, 236, 359, 851
Hpy8I GTNNAC 2 cut(s) 304, 306
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 7 cut(s) 27, 62, 232, 486, 587, 659, 755
HpyCH4III ACNGT 4 cut(s) 190, 505, 600, 644
HpyCH4V TGCA 5 cut(s) 138, 154, 702, 794, 1155
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 345, 1118
HpyF3I CTNAG 5 cut(s) 147, 171, 202, 615, 1108
Hsp92II CATG 6 cut(s) 269, 331, 514, 706, 883, 937
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 3 cut(s) 142, 382, 569
LmnI GCTCC 3 cut(s) 550, 724, 961
LweI GCATC 1 cut(s) 781
MaeI CTAG 3 cut(s) 50, 536, 851
MaeIII GTNAC 2 cut(s) 7, 505
MalI GATC 3 cut(s) 144, 384, 571
MboI GATC 3 cut(s) 142, 382, 569
MboII GAAGA 4 cut(s) 116, 332, 840, 1102
MflI RGATCY 2 cut(s) 142, 382
MhlI GDGCHC 1 cut(s) 896
MluCI AATT 6 cut(s) 76, 310, 405, 414, 741, 939
MlyI GAGTC 1 cut(s) 546
MmeI TCCRAC 2 cut(s) 955, 1025
Mph1103I ATGCAT 1 cut(s) 796
MseI TTAA 1 cut(s) 888
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 3 cut(s) 65, 81, 277
MspR9I CCNGG 2 cut(s) 549, 582
MvaI CCWGG 2 cut(s) 549, 582
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 160, 345, 1118
NdeI CATATG 1 cut(s) 1123
NdeII GATC 3 cut(s) 142, 382, 569
NlaIII CATG 6 cut(s) 269, 331, 514, 706, 883, 937
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 563
PceI AGGCCT 2 cut(s) 16, 576
PfeI GAWTC 3 cut(s) 44, 107, 181
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 1 cut(s) 434
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 547, 580
PspGI CCWGG 2 cut(s) 547, 580
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 2 cut(s) 142, 382
RsaI GTAC 2 cut(s) 93, 305
RsaNI GTAC 2 cut(s) 92, 304
SacI GAGCTC 1 cut(s) 896
SacII CCGCGG 1 cut(s) 433
SaqAI TTAA 1 cut(s) 888
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 3 cut(s) 142, 382, 569
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 2 cut(s) 549, 582
SduI GDGCHC 1 cut(s) 896
SfaNI GCATC 1 cut(s) 781
Sfr303I CCGCGG 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 563
SgrBI CCGCGG 1 cut(s) 433
SinI GGWCC 1 cut(s) 71
Sse9I AATT 6 cut(s) 76, 310, 405, 414, 741, 939
SseBI AGGCCT 2 cut(s) 16, 576
SsiI CCGC 3 cut(s) 430, 432, 812
SspI AATATT 1 cut(s) 197
SspMI CTAG 3 cut(s) 50, 536, 851
SstI GAGCTC 1 cut(s) 896
StuI AGGCCT 2 cut(s) 16, 576
StyD4I CCNGG 2 cut(s) 547, 580
StyI CCWWGG 2 cut(s) 419, 447
TaaI ACNGT 4 cut(s) 190, 505, 600, 644
TaqI TCGA 4 cut(s) 563, 588, 747, 870
TasI AATT 6 cut(s) 76, 310, 405, 414, 741, 939
TatI WGTACW 2 cut(s) 91, 303
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 3 cut(s) 44, 107, 181
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 4 cut(s) 510, 603, 647, 704
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspRI CASTG 4 cut(s) 510, 603, 647, 704
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 484
XapI RAATTY 3 cut(s) 76, 310, 741
XbaI TCTAGA 1 cut(s) 850
XceI RCATGY 1 cut(s) 706
XspI CTAG 3 cut(s) 50, 536, 851
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.