pycom13g04590

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001480
Physical Location & Seq
Reverse (-)
3081394 .. 3082702
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04590.2

Sequence Viewer

Length: 1191 bp
ATGTATGTGACAAAGCCTCTGTCTGTGTATAGAAGATCTCCTCAGTCACTGTCTCTTCCGCCCCCGGAGGGTCCAAATTCTGGTTATCTTGTACTCCACGACGACGAATCAGTTGAGATAAACTGTTGCGGATGTGAGGACGACGAGGTTAAAGGTTTGCCTTTCCCTCAGAACAAGGATTTAACAGTTGGATATGGCTCAGATGGCGAAGAGGTTGCCTTCATTCCAGTGCTTAATCAACCCTTGTCCTCCAATGGATACCATGTCATACTTCGAAGAGGGCGCCATAAAGGGGAAGCATGCACAAATACGAGGGAAGAGGACACGGATATTGGCTGTTGCGGAGGTAAAAGTATTCCAGATGCTAAACCAAAACCATTGGATCCGTCAGACATATATCAACAAATTGAGATAGTTCATAGGGAGAGAGAAAGCAGTCGTTTTTTTGCCAAGTCCGTTGATCCAGATGGTTTTCCTCCTTACTTCTTGAGGAGGAAAGGGTGGAACGTGAGAATGAGCACGCAGTATCGTTACCAATTGGGTGATGCCTCGGGACTCAACGCTTCGCTACGAGCTAGCCTTCCTGGGTTCTATTTTCCATTATCACATGACTGCTCTGAAGTTGTGTGTGTTGGCAAGTGGTATTGTCCTTTCATGTTTGTCAAGGAAGGCGGGGTTAAGTTGAAGGACCAAATGAAATATTCTATGTACTATGAAATAAAACTTGAGCAAAGATGGGAAAAGATTTTCGACAGCGTTAATGACAACACTGAAAGAAAAAAGAATCCTGCTGTGTTTGTGGATGCTTTTGTTCAAAGAGAGGTGGTTTATGTGGGTGGAAGGGAGGCCGTTTGGGATGAAAGAAATGCAGGTGGGGGTGATATGTTTGTGTGGTTTAAGAGTTTTGATGGGGTGGGAGGGGAAACAAGTGTGGGATTGAGCATGAAAGTTATTGAAAGAATGAAATGGGAGCAAGAAAGAGTTGGGTGGGTTGGTGGGGATGAAAGGCAAGTGAGGATGGAGAGAGTGGAAGAGTTTAGGGGGACGAGTGGTGGCGGGTGGAAGAGATTTGGTTGTTATGTGCTGGTAGAGAGGTTTGTACTGAAGAGAATGTCTACGACTGGAAGCGCTGCAGGACTACTCGCATATGATTTCAAGCACACTCACCAGATCAAGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

397

Amino Acids

45.05

Weight (kDa)

6.44

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 860
Acc36I ACCTGC 1 cut(s) 860
AccB1I GGYRCC 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 1115
AciI CCGC 5 cut(s) 59, 129, 342, 672, 1056
AclWI GGATC 3 cut(s) 377, 390, 455
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 639, 1124
AcyI GRCGYC 1 cut(s) 283
AfaI GTAC 3 cut(s) 93, 710, 1101
AfeI AGCGCT 1 cut(s) 1129
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 292
AgsI TTSAA 4 cut(s) 685, 815, 956, 1156
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 3 cut(s) 377, 390, 455
AlwNI CAGNNNCTG 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 550
Aor51HI AGCGCT 1 cut(s) 1129
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 1 cut(s) 1130
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 2 cut(s) 285, 1130
AspS9I GGNCC 2 cut(s) 71, 688
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 554, 890, 1157
AsuII TTCGAA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 2 cut(s) 71, 688
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 1117
BccI CCATC 5 cut(s) 197, 461, 729, 902, 1012
BceAI ACGGC 1 cut(s) 833
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 585
BciVI GTATCC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 1131
BfoI RGCGCY 2 cut(s) 286, 1131
BfuAI ACCTGC 1 cut(s) 860
BfuI GTATCC 1 cut(s) 251
BglII AGATCT 1 cut(s) 35
BisI GCNGC 1 cut(s) 1131
BlsI GCNGC 1 cut(s) 1132
Bme1390I CCNGG 2 cut(s) 65, 585
Bme18I GGWCC 2 cut(s) 71, 688
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 71, 688
BmiI GGNNCC 3 cut(s) 72, 284, 384
BmrFI CCNGG 2 cut(s) 65, 585
BmsI GCATC 3 cut(s) 352, 535, 793
BmtI GCTAGC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 508, 746
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 63, 549, 584
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 292
Bse1I ACTGG 2 cut(s) 227, 1126
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 63, 549, 584
BseGI GGATG 5 cut(s) 137, 808, 862, 1006, 1023
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 292
BseMII CTCAG 3 cut(s) 56, 182, 213
BseNI ACTGG 2 cut(s) 227, 1126
BseRI GAGGAG 2 cut(s) 30, 505
BseXI GCAGC 1 cut(s) 1117
BshFI GGCC 1 cut(s) 848
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 2 cut(s) 567, 1057
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 292
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 567, 1057
BsnI GGCC 1 cut(s) 848
BsoBI CYCGRG 1 cut(s) 550
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 4 cut(s) 35, 382, 460, 1170
BspACI CCGC 5 cut(s) 59, 129, 342, 672, 1056
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 3 cut(s) 55, 181, 212
BspLI GGNNCC 3 cut(s) 72, 284, 384
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 1 cut(s) 860
BspOI GCTAGC 1 cut(s) 579
BspPI GGATC 3 cut(s) 377, 390, 455
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 282
BsrI ACTGG 2 cut(s) 227, 1126
BssECI CCNNGG 3 cut(s) 63, 549, 584
BssMI GATC 4 cut(s) 35, 382, 460, 1170
BssNI GRCGYC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 51, 125, 187
Bst6I CTCTTC 7 cut(s) 60, 204, 271, 312, 1026, 1058, 1100
BstACI GRCGYC 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 301, 521, 577
BstDEI CTNAG 3 cut(s) 42, 168, 199
BstF5I GGATG 5 cut(s) 137, 808, 862, 1006, 1023
BstH2I RGCGCY 2 cut(s) 286, 1131
BstHHI GCGC 2 cut(s) 285, 1130
BstKTI GATC 4 cut(s) 38, 385, 463, 1173
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 35, 382, 460, 1170
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 63, 583
BstSFI CTRYAG 1 cut(s) 1131
BstV1I GCAGC 1 cut(s) 1117
BstX2I RGATCY 2 cut(s) 35, 382
BstYI RGATCY 2 cut(s) 35, 382
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 848
BtsCI GGATG 5 cut(s) 137, 808, 862, 1006, 1023
BtsIMutI CAGTG 3 cut(s) 47, 234, 768
BveI ACCTGC 1 cut(s) 860
Cac8I GCNNGC 3 cut(s) 301, 521, 577
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 2 cut(s) 285, 1130
Cfr13I GGNCC 2 cut(s) 71, 688
Csp6I GTAC 3 cut(s) 92, 709, 1100
CviAII CATG 5 cut(s) 263, 300, 608, 655, 943
CviJI RGCY 6 cut(s) 16, 198, 336, 575, 579, 848
CviKI_1 RGCY 6 cut(s) 16, 198, 336, 575, 579, 848
CviQI GTAC 3 cut(s) 92, 709, 1100
DdeI CTNAG 3 cut(s) 42, 168, 199
DinI GGCGCC 1 cut(s) 284
DpnI GATC 4 cut(s) 37, 384, 462, 1172
DpnII GATC 4 cut(s) 35, 382, 460, 1170
Eam1104I CTCTTC 7 cut(s) 60, 204, 271, 312, 1026, 1058, 1100
EarI CTCTTC 7 cut(s) 60, 204, 271, 312, 1026, 1058, 1100
EciI GGCGGA 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 71, 688
Eco47III AGCGCT 1 cut(s) 1129
Eco57I CTGAAG 2 cut(s) 639, 1124
Eco88I CYCGRG 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 583
EgeI GGCGCC 1 cut(s) 284
EheI GGCGCC 1 cut(s) 284
FaeI CATG 5 cut(s) 266, 303, 611, 658, 946
FaqI GGGAC 2 cut(s) 567, 1057
FatI CATG 5 cut(s) 262, 299, 607, 654, 942
FauI CCCGC 2 cut(s) 665, 1049
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 1 cut(s) 1115
Fnu4HI GCNGC 1 cut(s) 1131
FokI GGATG 5 cut(s) 144, 815, 869, 1013, 1030
Fsp4HI GCNGC 1 cut(s) 1131
FspBI CTAG 1 cut(s) 576
GlaI GCGC 2 cut(s) 284, 1129
GluI GCNGC 1 cut(s) 1131
HaeII RGCGCY 2 cut(s) 286, 1131
HaeIII GGCC 1 cut(s) 848
HapII CCGG 1 cut(s) 65
HhaI GCGC 2 cut(s) 285, 1130
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 5 cut(s) 266, 303, 611, 658, 946
Hin6I GCGC 2 cut(s) 283, 1128
HinP1I GCGC 2 cut(s) 283, 1128
HinfI GANTC 3 cut(s) 107, 555, 784
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 554, 890, 1157
Hpy166II GTNNAC 1 cut(s) 1116
Hpy188I TCNGA 4 cut(s) 171, 202, 391, 619
Hpy188III TCNNGA 5 cut(s) 359, 464, 487, 552, 1174
Hpy8I GTNNAC 1 cut(s) 1116
Hpy99I CGWCG 3 cut(s) 104, 107, 146
HpyAV CCTTC 5 cut(s) 229, 590, 662, 679, 834
HpyCH4III ACNGT 3 cut(s) 51, 125, 187
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 3 cut(s) 303, 869, 1133
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 3 cut(s) 42, 168, 199
HpySE526I ACGT 1 cut(s) 507
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 5 cut(s) 266, 303, 611, 658, 946
HspAI GCGC 2 cut(s) 283, 1128
KasI GGCGCC 1 cut(s) 282
Kzo9I GATC 4 cut(s) 35, 382, 460, 1170
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 1 cut(s) 1117
LweI GCATC 3 cut(s) 352, 535, 793
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 3 cut(s) 7, 45, 530
MalI GATC 4 cut(s) 37, 384, 462, 1172
MboI GATC 4 cut(s) 35, 382, 460, 1170
MboII GAAGA 8 cut(s) 45, 47, 221, 288, 329, 1043, 1075, 1117
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 2 cut(s) 35, 382
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 3 cut(s) 76, 405, 536
Mly113I GGCGCC 1 cut(s) 283
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 1 cut(s) 169
MseI TTAA 6 cut(s) 150, 182, 234, 678, 759, 897
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 65, 585
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 1 cut(s) 204
NarI GGCGCC 1 cut(s) 283
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 1147
NdeII GATC 4 cut(s) 35, 382, 460, 1170
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 5 cut(s) 266, 303, 611, 658, 946
NlaIV GGNNCC 3 cut(s) 72, 284, 384
NmuCI GTSAC 2 cut(s) 7, 45
NspI RCATGY 1 cut(s) 303
NspV TTCGAA 1 cut(s) 274
PaeI GCATGC 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 860
PfeI GAWTC 2 cut(s) 107, 784
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 1132
PleI GAGTC 1 cut(s) 549
PluTI GGCGCC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 72, 284, 384
PspPI GGNCC 2 cut(s) 71, 688
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 2 cut(s) 35, 382
RsaI GTAC 3 cut(s) 93, 710, 1101
RsaNI GTAC 3 cut(s) 92, 709, 1100
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 6 cut(s) 150, 182, 234, 678, 759, 897
SatI GCNGC 1 cut(s) 1131
Sau3AI GATC 4 cut(s) 35, 382, 460, 1170
Sau96I GGNCC 2 cut(s) 71, 688
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 2 cut(s) 65, 585
SduI GDGCHC 1 cut(s) 521
SetI ASST 9 cut(s) 150, 157, 216, 349, 510, 577, 825, 874, 1097
SfaNI GCATC 3 cut(s) 352, 535, 793
SfcI CTRYAG 1 cut(s) 1131
SfoI GGCGCC 1 cut(s) 284
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 2 cut(s) 71, 688
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 487, 725
SmoI CTYRAG 2 cut(s) 487, 725
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 76, 405, 536
SsiI CCGC 5 cut(s) 59, 129, 342, 672, 1056
SspDI GGCGCC 1 cut(s) 282
SspI AATATT 1 cut(s) 701
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 63, 583
TaaI ACNGT 3 cut(s) 51, 125, 187
TaiI ACGT 1 cut(s) 510
TaqI TCGA 2 cut(s) 274, 750
TasI AATT 3 cut(s) 76, 405, 536
TatI WGTACW 3 cut(s) 91, 708, 1099
TfiI GAWTC 2 cut(s) 107, 784
Tru1I TTAA 6 cut(s) 150, 182, 234, 678, 759, 897
Tru9I TTAA 6 cut(s) 150, 182, 234, 678, 759, 897
TscAI CASTG 3 cut(s) 54, 234, 775
TseFI GTSAC 2 cut(s) 7, 45
TseI GCWGC 1 cut(s) 1130
Tsp45I GTSAC 2 cut(s) 7, 45
TspDTI ATGAA 9 cut(s) 211, 407, 643, 710, 729, 873, 959, 977, 1017
TspGWI ACGGA 3 cut(s) 341, 375, 445
TspRI CASTG 3 cut(s) 54, 234, 775
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 71, 688
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 1115
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.