Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

23596038 .. 23597398

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G243200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTATGTAACAAGGCCTCTTTCGATGTACCGGAAATCTCCAAGCACCCTTTCCATAAAGCCACCTGATGCTCCACATTCAGGTTATGTGGTGATCACAGATGAAGAGGCAGAGTCAAAAAACACATCTTGTTGGGGCCTTTGCAAGCGTGGGAAAGTGAAAAAACTACCCTTCCCACAGGACAAGATTCTGACCATTGTTTATACATCCGAGTACCAAGAGGCAACCGCGACGAAGGTCTGGTTCATCCCAGTTCTTGATCAACCTCTGTCTTCTAACTGCTACTATGTTATCAGAGCAAATGGCAGGCACAAAGGGAAAGCATGCAGATGTTCTAGAGAGAGGGACATGACCAACTGCTGCATTAGAGGTTTCTTGAGAGACAAAAAACCTAAGGTTTTAAATTTTAGAGACATATACCAAGAAGTTAAGATTCATCGCCATCAAGGTGGTGGTTTTTTTGCCGAGTCTGTAGCTCCTGATGGTGTTCCTCCAAAATTCCTAAAGAAAAAAGGATGGAAAGTGCGTAGCTCAAGTATGTACCGGAATCAATTAACTGATGCTTTAGGCCTCGACGCCTCCCTCCGGTCTCGTCTTCCGGACTTCAATTTTCCCATATTTAAAAAGTGTTCGGCTTCTAGTGTTGTGGGGAGATGGTACTGTCCATTTGCATTTGTGAGAGAGAAAGCAACCATAAGACACCAGATGAAGAAGTCCAAGTTTTACAGAATAACTCTTGAGCAATGGTGGGAAGAGATTTACTCTCTTGGGAATGTTAACAATGAAGGAAATGTTGTGAATGTGAGTGTAGATGTGCAAAGGGAAGTGGCTTTGGTATCTGCCACAGAAGCCGTGAAGGACGATAGGAATGGCCGTACTGGGTTCACCTGGTTCAAAGCTTATAACCCACGTAGCAAGAAAGTGGTGAGTGTAGGTTTGAGTTCAGCAATTGTTCAGAATATGAGATGGGTTTTGGAGGCAGGAGGATGGGTTAATGGGGATGAAATGGATGTGAGAGTGGAGAGGGTAGAAGAGATTACAGGTGAGAATAGGTGGACGAAGTTTGGCTGTTATGTTATGGTGGAGAGTTTCTCCTTGAGAAGAATGGATGGAAGTTTGGCTTGGAGATCTGATTTTAGGCACACTGATAAGATTCGATGTAAATGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

391

Amino Acids

45.0

Weight (kDa)

9.63

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	2 cut(s)	403, 497
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	5 cut(s)	29, 215, 542, 659, 877
AfiI	CCNNNNNNNGG	2 cut(s)	80, 585
AgsI	TTSAA	2 cut(s)	607, 895
AjnI	CCWGG	1 cut(s)	887
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 1105, 1137
AluBI	AGCT	3 cut(s)	476, 531, 899
AluI	AGCT	3 cut(s)	476, 531, 899
Alw26I	GTCTC	3 cut(s)	375, 405, 594
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	4 cut(s)	14, 136, 568, 871
ApeKI	GCWGC	1 cut(s)	360
ApoI	RAATTY	2 cut(s)	403, 497
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	103, 877, 937, 1055
AxyI	CCTNAGG	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	264, 587
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	7 cut(s)	450, 476, 510, 648, 960, 981, 1103
BceAI	ACGGC	2 cut(s)	836, 858
BciT130I	CCWGG	1 cut(s)	889
BclI	TGATCA	2 cut(s)	93, 259
BcoDI	GTCTC	3 cut(s)	375, 405, 594
BfaI	CTAG	2 cut(s)	336, 639
BfmI	CTRYAG	1 cut(s)	471
BglII	AGATCT	1 cut(s)	1127
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	889
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	889
BmrI	ACTGGG	2 cut(s)	245, 888
BmsI	GCATC	2 cut(s)	58, 550
BmuI	ACTGGG	2 cut(s)	245, 888
BoxI	GACNNNNGTC	1 cut(s)	236
BpiI	GAAGAC	2 cut(s)	264, 587
BplI	GAGNNNNNCTC	4 cut(s)	746, 778, 1076, 1108
BpuEI	CTTGAG	4 cut(s)	397, 517, 758, 1117
BsaAI	YACGTR	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	594
BsaWI	WCCGGW	4 cut(s)	30, 543, 585, 598
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 585
Bse1I	ACTGG	2 cut(s)	251, 883
Bse21I	CCTNAGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	749
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	889
BseGI	GGATG	7 cut(s)	206, 246, 521, 992, 1006, 1015, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	80, 585
BseMI	GCAATG	1 cut(s)	749
BseNI	ACTGG	2 cut(s)	251, 883
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	16, 138, 570, 873
BsiSI	CCGG	4 cut(s)	31, 544, 586, 599
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	80, 585
BsmAI	GTCTC	3 cut(s)	375, 405, 594
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	16, 138, 570, 873
Bso31I	GGTCTC	1 cut(s)	594
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	93, 259, 1127
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	4 cut(s)	16, 138, 570, 873
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	594
BsrDI	GCAATG	1 cut(s)	749
BsrI	ACTGG	2 cut(s)	251, 883
BssMI	GATC	3 cut(s)	93, 259, 1127
BssNI	GRCGYC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	3 cut(s)	99, 747, 1026
BstACI	GRCGYC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	3 cut(s)	146, 308, 325
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	7 cut(s)	206, 246, 521, 992, 1006, 1015, 1114
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	96, 262, 1130
BstMAI	GTCTC	3 cut(s)	375, 405, 594
BstMBI	GATC	3 cut(s)	93, 259, 1127
BstMWI	GCNNNNNNNGC	1 cut(s)	848
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	887
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	2 cut(s)	264, 587
BstX2I	RGATCY	1 cut(s)	1127
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	1127
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	16, 138, 570, 873
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	7 cut(s)	206, 246, 521, 992, 1006, 1015, 1114
BtsIMutI	CAGTG	1 cut(s)	1143
Cac8I	GCNNGC	3 cut(s)	146, 308, 325
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	584
CsiI	ACCWGGT	1 cut(s)	887
Csp6I	GTAC	5 cut(s)	28, 214, 541, 658, 876
CviAII	CATG	2 cut(s)	324, 349
CviQI	GTAC	5 cut(s)	28, 214, 541, 658, 876
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	95, 261, 1129
DpnII	GATC	3 cut(s)	93, 259, 1127
DraI	TTTAAA	2 cut(s)	402, 622
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	3 cut(s)	99, 747, 1026
EarI	CTCTTC	3 cut(s)	99, 747, 1026
Eco147I	AGGCCT	2 cut(s)	16, 570
Eco31I	GGTCTC	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	887
FaeI	CATG	2 cut(s)	327, 352
FalI	AAGNNNNNCTT	2 cut(s)	1105, 1137
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	323, 348
FbaI	TGATCA	2 cut(s)	93, 259
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	7 cut(s)	193, 233, 528, 999, 1013, 1022, 1121
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	2 cut(s)	336, 639
GluI	GCNGC	1 cut(s)	361
HaeIII	GGCC	4 cut(s)	16, 138, 570, 873
HapII	CCGG	4 cut(s)	31, 544, 586, 599
HgaI	GACGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	2 cut(s)	327, 352
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	6 cut(s)	113, 187, 433, 467, 547, 1153
HpaI	GTTAAC	1 cut(s)	778
HpaII	CCGG	4 cut(s)	31, 544, 586, 599
HphI	GGTGA	4 cut(s)	103, 877, 937, 1055
Hpy166II	GTNNAC	3 cut(s)	778, 885, 1056
Hpy188I	TCNGA	5 cut(s)	192, 211, 296, 957, 1132
Hpy188III	TCNNGA	6 cut(s)	257, 336, 376, 479, 599, 737
Hpy8I	GTNNAC	3 cut(s)	778, 885, 1056
Hpy99I	CGWCG	2 cut(s)	235, 578
HpyAV	CCTTC	4 cut(s)	181, 229, 779, 850
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	5 cut(s)	144, 327, 363, 671, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	848
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	910
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	2 cut(s)	327, 352
Kpn2I	TCCGGA	1 cut(s)	598
Ksp22I	TGATCA	2 cut(s)	93, 259
KspAI	GTTAAC	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	93, 259, 1127
LmnI	GCTCC	2 cut(s)	76, 481
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	2 cut(s)	58, 550
MabI	ACCWGGT	1 cut(s)	887
MaeI	CTAG	2 cut(s)	336, 639
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	95, 261, 1129
MboI	GATC	3 cut(s)	93, 259, 1127
MboII	GAAGA	7 cut(s)	116, 264, 587, 721, 764, 1043, 1113
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	1127
MluCI	AATT	5 cut(s)	403, 497, 551, 607, 948
MlyI	GAGTC	2 cut(s)	122, 476
MroI	TCCGGA	1 cut(s)	598
MseI	TTAA	6 cut(s)	401, 429, 554, 621, 777, 993
MslI	CAYNNNNRTG	2 cut(s)	328, 447
MspI	CCGG	4 cut(s)	31, 544, 586, 599
MspR9I	CCNGG	1 cut(s)	889
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	1 cut(s)	889
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	848
NdeII	GATC	3 cut(s)	93, 259, 1127
NlaIII	CATG	2 cut(s)	327, 352
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	490
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PceI	AGGCCT	2 cut(s)	16, 570
PfeI	GAWTC	4 cut(s)	187, 433, 547, 1153
PkrI	GCNGC	1 cut(s)	362
PleI	GAGTC	2 cut(s)	121, 475
PpsI	GAGTC	2 cut(s)	121, 475
Ppu21I	YACGTR	1 cut(s)	911
PshAI	GACNNNNGTC	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	1127
RsaI	GTAC	5 cut(s)	29, 215, 542, 659, 877
RsaNI	GTAC	5 cut(s)	28, 214, 541, 658, 876
RseI	CAYNNNNRTG	2 cut(s)	328, 447
SaqAI	TTAA	6 cut(s)	401, 429, 554, 621, 777, 993
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	93, 259, 1127
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	122, 476
ScrFI	CCNGG	1 cut(s)	889
SexAI	ACCWGGT	1 cut(s)	887
SfaNI	GCATC	2 cut(s)	58, 550
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	2 cut(s)	328, 447
SmlI	CTYRAG	4 cut(s)	376, 532, 737, 1096
SmoI	CTYRAG	4 cut(s)	376, 532, 737, 1096
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	5 cut(s)	403, 497, 551, 607, 948
SseBI	AGGCCT	2 cut(s)	16, 570
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	336, 639
StuI	AGGCCT	2 cut(s)	16, 570
StyD4I	CCNGG	1 cut(s)	887
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	3 cut(s)	23, 573, 1156
TasI	AATT	5 cut(s)	403, 497, 551, 607, 948
TfiI	GAWTC	4 cut(s)	187, 433, 547, 1153
Tru1I	TTAA	6 cut(s)	401, 429, 554, 621, 777, 993
Tru9I	TTAA	6 cut(s)	401, 429, 554, 621, 777, 993
TscAI	CASTG	1 cut(s)	1150
TseI	GCWGC	1 cut(s)	360
TspDTI	ATGAA	6 cut(s)	117, 235, 425, 722, 798, 1017
TspRI	CASTG	1 cut(s)	1150
XapI	RAATTY	2 cut(s)	403, 497
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XspI	CTAG	2 cut(s)	336, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.