Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

73301487 .. 73302302

Gene Structure 816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG554600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAATTGTTGCTTCAGAGACTTCGTGAGGGACAAGAAACCAACACTTTTGAATCTCAGAAACATATACCAACAGGTTAAGATTCATCGGCACCAAGGAGGTGGTTTTTTTGCGGAGTCTGTGGCTCCTGATGGTGTTCCTCCTAAATTTCTAAGAAGGAAAGGATGGGAAATCCGCAGCTCAAGTTTGTACCGATGGCAATTAAGTGATGCCTTGGGCCTCGATGTTTCCCTCCGATCACGTTTCCCTGACTTCAACTTTCCCATCTTTAAGAAACGTTCAGCTTCTAATGTTGTGGGCAAATGGTACAGTCCGTTTATGTTTGTGAGAGAGAAAGCAACCATGAGACGCCAGATGAAGAAGACAAAATTTTACAGAATAACTCTCCAGCAGTGGTGGGAAGAGATTTACGCCTGTGGGAATACTAGCAACGAAGGCAATGTTGTGAATGTGGATGTAAGCGTGCAAAGGGAAGTGGCTTTCGTATCTGCCGTGGAAGCTGTCATGGACGATAGAAATGGTCGTACTGGGTTCTCTTGGTTCAAGGCTTATAATCCAGATAGCCAAAAACTGGTCACCGTAGGTCTGAGTTCAGCAATTGTCCAGAATATGAAATGGGTCTTAGAGGCAGGAGGGTGGGTTACTGGGGACGAAAGAGACGCAAGGGTGCAGAAAGTAGAAGAGACTACAAGCAGGTGGAGGAAGTTTGGCTGTTATGTCCTGGTGGAGAGTTTCTACTTGAGAAGAATGGATGGAAGCTTGGTATTGAGACGTGATTTTAGGCACACAAATAATATTCGATGTAAGTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

271

Amino Acids

31.82

Weight (kDa)

9.95

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AarI	CACCTGC	1 cut(s)	684
Acc36I	ACCTGC	1 cut(s)	684
AccB1I	GGYRCC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	571
AciI	CCGC	2 cut(s)	113, 175
AclI	AACGTT	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	146, 368
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	3 cut(s)	191, 308, 526
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	3 cut(s)	52, 256, 544
AjiI	CACGTC	1 cut(s)	773
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	4 cut(s)	180, 284, 500, 759
AluI	AGCT	4 cut(s)	180, 284, 500, 759
Alw26I	GTCTC	5 cut(s)	12, 340, 651, 677, 763
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	146, 368
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	5 cut(s)	125, 159, 189, 272, 746
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	5 cut(s)	12, 340, 651, 677, 763
BfaI	CTAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	722
BmgBI	CACGTC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	92, 126
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	2 cut(s)	537, 654
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	2 cut(s)	537, 654
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	166, 760
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	94, 213, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	532, 576, 649
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	3 cut(s)	94, 213, 492
BseGI	GGATG	3 cut(s)	170, 460, 757
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	70, 578
BseNI	ACTGG	3 cut(s)	532, 576, 649
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	44, 662
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	5 cut(s)	12, 340, 651, 677, 763
BsmBI	CGTCTC	3 cut(s)	340, 651, 763
BsmFI	GGGAC	2 cut(s)	44, 662
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	2 cut(s)	113, 175
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	69, 579
BspLI	GGNNCC	2 cut(s)	92, 126
BspMI	ACCTGC	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	445
BsrI	ACTGG	3 cut(s)	532, 576, 649
BssECI	CCNNGG	3 cut(s)	94, 213, 492
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	94, 213
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	311, 580
Bst6I	CTCTTC	2 cut(s)	396, 675
BstACI	GRCGYC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	4 cut(s)	56, 152, 587, 622
BstDSI	CCRYGG	1 cut(s)	492
BstEII	GGTNACC	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	170, 460, 757
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	5 cut(s)	12, 340, 651, 677, 763
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 497
BstNI	CCWGG	1 cut(s)	722
BstPI	GGTNACC	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	720
BstV1I	GCAGC	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	773
BtsCI	GGATG	3 cut(s)	170, 460, 757
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	2 cut(s)	357, 668
Csp6I	GTAC	3 cut(s)	190, 307, 525
CviAII	CATG	2 cut(s)	343, 505
CviQI	GTAC	3 cut(s)	190, 307, 525
DdeI	CTNAG	4 cut(s)	56, 152, 587, 622
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	396, 675
EarI	CTCTTC	2 cut(s)	396, 675
Eco130I	CCWWGG	2 cut(s)	94, 213
Eco91I	GGTNACC	1 cut(s)	574
EcoO65I	GGTNACC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	2 cut(s)	94, 213
ErhI	CCWWGG	2 cut(s)	94, 213
Esp3I	CGTCTC	3 cut(s)	340, 651, 763
FaeI	CATG	2 cut(s)	346, 508
FaiI	YATR	8 cut(s)	65, 67, 320, 344, 506, 552, 611, 717
FaqI	GGGAC	2 cut(s)	44, 662
FatI	CATG	2 cut(s)	342, 504
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	3 cut(s)	177, 467, 764
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	2 cut(s)	357, 668
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	346, 508
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	3 cut(s)	52, 82, 116
HphI	GGTGA	1 cut(s)	568
Hpy188I	TCNGA	4 cut(s)	17, 59, 236, 588
Hpy188III	TCNNGA	4 cut(s)	25, 128, 557, 604
HpyAV	CCTTC	2 cut(s)	150, 428
HpyCH4III	ACNGT	2 cut(s)	311, 580
HpyCH4IV	ACGT	3 cut(s)	241, 277, 772
HpyCH4V	TGCA	2 cut(s)	466, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 497
HpyF3I	CTNAG	4 cut(s)	56, 152, 587, 622
HpySE526I	ACGT	3 cut(s)	241, 277, 772
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	346, 508
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	3 cut(s)	241, 277, 772
MaeIII	GTNAC	2 cut(s)	574, 640
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	5 cut(s)	370, 373, 413, 692, 756
MfeI	CAATTG	1 cut(s)	597
MluCI	AATT	5 cut(s)	4, 146, 200, 368, 597
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	8 cut(s)	21, 92, 150, 230, 242, 619, 626, 693
MseI	TTAA	3 cut(s)	78, 203, 270
MspR9I	CCNGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	435, 497
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	346, 508
NlaIV	GGNNCC	2 cut(s)	92, 126
NmuCI	GTSAC	1 cut(s)	574
PaqCI	CACCTGC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	52, 82
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	92, 126
PspPI	GGNCC	1 cut(s)	217
RsaI	GTAC	3 cut(s)	191, 308, 526
RsaNI	GTAC	3 cut(s)	190, 307, 525
SaqAI	TTAA	3 cut(s)	78, 203, 270
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	722
SfaNI	GCATC	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	181, 739
SmoI	CTYRAG	2 cut(s)	181, 739
Sse9I	AATT	5 cut(s)	4, 146, 200, 368, 597
SsiI	CCGC	2 cut(s)	113, 175
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	2 cut(s)	94, 213
TaaI	ACNGT	2 cut(s)	311, 580
TaiI	ACGT	3 cut(s)	244, 280, 775
TaqI	TCGA	2 cut(s)	222, 799
TasI	AATT	5 cut(s)	4, 146, 200, 368, 597
TfiI	GAWTC	2 cut(s)	52, 82
Tru1I	TTAA	3 cut(s)	78, 203, 270
Tru9I	TTAA	3 cut(s)	78, 203, 270
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	4 cut(s)	17, 74, 371, 626
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	571
XapI	RAATTY	2 cut(s)	146, 368
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.