RchiOBHm_Chr4g0436581

Protein of unknown function (DUF1262)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
59855479 .. 59855964
486 bp
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UTR
Exon/CDS
Intron
PRQ40490

Sequence Viewer

Length: 486 bp
ATGAAGCAATGCATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTTGATAAGTACAATGAAGGTAAGAGCAATAATGCTAATGCTGTGTTTGTGGATGCTTTTGTCCAAAGAGAGGCAGTTTTTGTTGCTGGAAGTGAAGCTATTTGGGATAATCATGAGAGAGTTGATAACGCTGGTGACGGTTTCATGTGGTTTAAGAGCTCTGATGGTGTGGGAGGAGAAAGGAGTGTAGGATTGAGCATGAAAATTGTTGAGAGAATGAAATGGGAGCAAGAAAGAGTTGGATGGCTTGCTGGGGATGAAAGAAAAGTAAGAGTGGAGAGAGTAGAAGAGTTTGGAGGCAGAGGTAGTTTGAGTAAATTTGCTTATTATATGTTGGTAGAGAGATTTGTATTTAAAAGAAGGGATGGAAGCTTAGCATTATTGACATATGATTTCAAGCACACTCACCAGATTAGGAACAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

19.07

Weight (kDa)

7.84

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 51, 371
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 451
AluBI AGCT 3 cut(s) 152, 213, 426
AluI AGCT 3 cut(s) 152, 213, 426
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 51, 371
AsuHPI GGTGA 2 cut(s) 200, 452
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BccI CCATC 4 cut(s) 36, 212, 291, 413
BcoDI GTCTC 1 cut(s) 22
BlpI GCTNAGC 1 cut(s) 427
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 14
BseGI GGATG 4 cut(s) 112, 302, 316, 424
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1720I GCTNAGC 1 cut(s) 427
BspHI TCATGA 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 4 cut(s) 112, 302, 316, 424
BstMAI GTCTC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 16
BtsCI GGATG 4 cut(s) 112, 302, 316, 424
Cac8I GCNNGC 1 cut(s) 303
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 1 cut(s) 64
CviAII CATG 4 cut(s) 13, 167, 199, 253
CviJI RGCY 4 cut(s) 152, 213, 301, 426
CviKI_1 RGCY 4 cut(s) 152, 213, 301, 426
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 427
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 4 cut(s) 16, 170, 202, 256
FaiI YATR 9 cut(s) 14, 21, 168, 200, 254, 384, 386, 442, 444
FatI CATG 4 cut(s) 12, 166, 198, 252
FauNDI CATATG 1 cut(s) 442
FokI GGATG 4 cut(s) 119, 309, 323, 431
FriOI GRGCYC 1 cut(s) 215
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 53
Hin1II CATG 4 cut(s) 16, 170, 202, 256
HindIII AAGCTT 1 cut(s) 424
HphI GGTGA 2 cut(s) 200, 452
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 65, 408
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 427
Hsp92II CATG 4 cut(s) 16, 170, 202, 256
LmnI GCTCC 2 cut(s) 34, 280
LpnPI CCDG 5 cut(s) 17, 126, 171, 291, 476
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 3 cut(s) 51, 258, 371
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 4 cut(s) 118, 221, 344, 350
Mph1103I ATGCAT 1 cut(s) 14
MseI TTAA 2 cut(s) 207, 408
NdeI CATATG 1 cut(s) 442
NlaIII CATG 4 cut(s) 16, 170, 202, 256
NmuCI GTSAC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 1 cut(s) 16
PagI TCATGA 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 305
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 207, 408
SduI GDGCHC 1 cut(s) 215
SetI ASST 5 cut(s) 76, 154, 215, 361, 428
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 3 cut(s) 51, 258, 371
SstI GAGCTC 1 cut(s) 215
TaaI ACNGT 1 cut(s) 194
TasI AATT 3 cut(s) 51, 258, 371
TatI WGTACW 1 cut(s) 63
Tru1I TTAA 2 cut(s) 207, 408
Tru9I TTAA 2 cut(s) 207, 408
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 7 cut(s) 17, 36, 84, 187, 269, 287, 327
XapI RAATTY 2 cut(s) 51, 371
XceI RCATGY 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.