pycom16g05070

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001480
Physical Location & Seq
Forward (+)
3262198 .. 3262881
684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05070.1

Sequence Viewer

Length: 684 bp
ATGAGCAAGCCGCGTCGTTACGAATTAGGTGAAGCCTCGGGACTCAACTCCTCGCTACGAGCAAGCCTTCCCGGGTTTGAGTTTCCATTATCACATGATTGCTCTGAAGTTGTGTGCGTTGGCAAGTGGTATTGTCCTTTCATGTTTGTCAAGGAAGGAGGGGTGAAGTTGAAGGACCAAATGAAATATTCTATGTACTACGAAATTAAACTTGAGCAAAGATGGGAAAAGATTTTCGACAGCGTTAATGAGGACGCTGGAAGCAAAAAAAATCCTGCTGTGTTTGTGGATGCTTTTGTTCAAAGGGAGGTGGTCTTTGTGGGTGGAAATGAGGCTGTTTGGGATGAAAGAAATGCGGATCCGGGTGCGGGTGACATGTTCATGTGGTTTAAAAGTTTTGATGGCGCGGGACGAGAAACAAGTGTGGCATTGAGCATGAAAGTCGTAGAGAGAGTGAAATGGGAGCAAGAAAGAGTTGGATGGGTTGGCGGGGATGAAAGGAAAGTGAGGGTGGAGAGAGTGGAAGAGTTTGGGGGGACGGGTGGTGGCGGGTGGAAGAGATTTAGTTGTTATGTGTTGGTAGAGAGGTTTGTACTGAAGAGAATGTCTACGACTGGAAGCGCAGCGGTACTACTCGCATATGATTTCAAGCACACTCACCAGATTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

228

Amino Acids

25.93

Weight (kDa)

7.63

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 608
AccII CGCG 2 cut(s) 13, 407
AciI CCGC 7 cut(s) 11, 356, 368, 407, 489, 549, 626
AclWI GGATC 2 cut(s) 353, 366
AcuI CTGAAG 2 cut(s) 126, 617
AfaI GTAC 3 cut(s) 197, 594, 630
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 172, 302, 649
AlwI GGATC 2 cut(s) 353, 366
Ama87I CYCGRG 2 cut(s) 37, 71
ApeKI GCWGC 1 cut(s) 623
AspLEI GCGC 2 cut(s) 407, 623
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 3 cut(s) 72, 73, 363
AsuHPI GGTGA 4 cut(s) 41, 175, 383, 650
AvaI CYCGRG 2 cut(s) 37, 71
AvaII GGWCC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 635
BccI CCATC 3 cut(s) 216, 395, 474
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BcnI CCSGG 3 cut(s) 72, 73, 363
BisI GCNGC 2 cut(s) 11, 624
BlsI GCNGC 2 cut(s) 12, 625
Bme1390I CCNGG 3 cut(s) 72, 73, 363
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 37, 71
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 72, 73, 363
BmsI GCATC 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 3 cut(s) 72, 73, 363
BsaJI CCNNGG 2 cut(s) 36, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 619
BseDI CCNNGG 2 cut(s) 36, 71
BseGI GGATG 4 cut(s) 295, 349, 485, 499
BseLI CCNNNNNNNGG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 635
Bsh1236I CGCG 2 cut(s) 13, 407
BsiHKCI CYCGRG 2 cut(s) 37, 71
BsiSI CCGG 2 cut(s) 72, 362
BslFI GGGAC 3 cut(s) 54, 423, 550
BslI CCNNNNNNNGG 1 cut(s) 368
BsmFI GGGAC 3 cut(s) 54, 423, 550
BsoBI CYCGRG 2 cut(s) 37, 71
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 7 cut(s) 11, 356, 368, 407, 489, 549, 626
BspFNI CGCG 2 cut(s) 13, 407
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 2 cut(s) 353, 366
BsrI ACTGG 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 36, 71
BssMI GATC 1 cut(s) 358
Bst6I CTCTTC 3 cut(s) 519, 551, 593
BstC8I GCNNGC 2 cut(s) 8, 64
BstF5I GGATG 4 cut(s) 295, 349, 485, 499
BstFNI CGCG 2 cut(s) 13, 407
BstHHI GCGC 2 cut(s) 407, 623
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 3 cut(s) 70, 71, 361
BstUI CGCG 2 cut(s) 13, 407
BstV1I GCAGC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 4 cut(s) 295, 349, 485, 499
Cac8I GCNNGC 2 cut(s) 8, 64
CfoI GCGC 2 cut(s) 407, 623
Cfr13I GGNCC 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 71
CseI GACGC 2 cut(s) 2, 263
Csp6I GTAC 3 cut(s) 196, 593, 629
CviAII CATG 5 cut(s) 95, 142, 376, 382, 436
CviJI RGCY 4 cut(s) 10, 35, 66, 335
CviKI_1 RGCY 4 cut(s) 10, 35, 66, 335
CviQI GTAC 3 cut(s) 196, 593, 629
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
DraI TTTAAA 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 519, 551, 593
EarI CTCTTC 3 cut(s) 519, 551, 593
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 126, 617
Eco88I CYCGRG 2 cut(s) 37, 71
FaeI CATG 5 cut(s) 98, 145, 379, 385, 439
FaiI YATR 9 cut(s) 96, 143, 194, 377, 383, 437, 573, 640, 642
FaqI GGGAC 3 cut(s) 54, 423, 550
FatI CATG 5 cut(s) 94, 141, 375, 381, 435
FauI CCCGC 4 cut(s) 361, 400, 482, 542
FauNDI CATATG 1 cut(s) 640
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 2 cut(s) 11, 624
FokI GGATG 4 cut(s) 302, 356, 492, 506
Fsp4HI GCNGC 2 cut(s) 11, 624
GlaI GCGC 2 cut(s) 406, 622
GluI GCNGC 2 cut(s) 11, 624
HapII CCGG 2 cut(s) 72, 362
HgaI GACGC 2 cut(s) 2, 263
HhaI GCGC 2 cut(s) 407, 623
Hin1II CATG 5 cut(s) 98, 145, 379, 385, 439
Hin6I GCGC 2 cut(s) 405, 621
HinP1I GCGC 2 cut(s) 405, 621
HinfI GANTC 1 cut(s) 42
HpaII CCGG 2 cut(s) 72, 362
HphI GGTGA 4 cut(s) 41, 175, 383, 650
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 1 cut(s) 18
HpyAV CCTTC 3 cut(s) 77, 149, 166
Hsp92II CATG 5 cut(s) 98, 145, 379, 385, 439
HspAI GCGC 2 cut(s) 405, 621
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 2 cut(s) 463, 669
LpnPI CCDG 6 cut(s) 85, 243, 288, 375, 600, 674
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 17, 371
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 3 cut(s) 536, 568, 610
MflI RGATCY 1 cut(s) 358
MluCI AATT 2 cut(s) 23, 204
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 8 cut(s) 46, 61, 152, 244, 301, 325, 501, 579
MseI TTAA 3 cut(s) 207, 246, 390
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 2 cut(s) 72, 362
MspR9I CCNGG 3 cut(s) 72, 73, 363
MvnI CGCG 2 cut(s) 13, 407
NciI CCSGG 3 cut(s) 72, 73, 363
NdeI CATATG 1 cut(s) 640
NdeII GATC 1 cut(s) 358
NlaIII CATG 5 cut(s) 98, 145, 379, 385, 439
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 371
NspI RCATGY 1 cut(s) 379
PciI ACATGT 1 cut(s) 375
PkrI GCNGC 2 cut(s) 12, 625
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PscI ACATGT 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 3 cut(s) 197, 594, 630
RsaNI GTAC 3 cut(s) 196, 593, 629
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 3 cut(s) 207, 246, 390
SatI GCNGC 2 cut(s) 11, 624
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 72, 73, 363
SetI ASST 3 cut(s) 31, 312, 590
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 23, 204
SsiI CCGC 7 cut(s) 11, 356, 368, 407, 489, 549, 626
SspI AATATT 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 70, 71, 361
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 23, 204
TatI WGTACW 2 cut(s) 195, 592
TauI GCSGC 1 cut(s) 13
Tru1I TTAA 3 cut(s) 207, 246, 390
Tru9I TTAA 3 cut(s) 207, 246, 390
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 6 cut(s) 130, 197, 360, 370, 452, 510
TspMI CCCGGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 175
XceI RCATGY 1 cut(s) 379
XmaI CCCGGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.