Rh4CG372100

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001480
Physical Location & Seq
Reverse (-)
62681743 .. 62683001
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG372100.1

Sequence Viewer

Length: 1173 bp
ATGTATGTGACAAGGCCTCTGTCTATGTATATGAGGTCTCCGGAGTTACTGTTCTTACCAACCCCGGAGGGACCAAATTCTGGTTATCTTGTACTCCAAGATGAAGAATCAATCCAAACCTCGTGTTTCGGAATGTGCAAACATATTGATATTAAGCAGCTGCCTTTCCCTCAGAACATGGACTTAACAGTTGGATATACCGAAGATATTAACGACGAGGTTACCTTCATTCCAGTGCTTGATCAGCCCTTATCTTCCAATACATACTATGTGATACGCCGCAGTGGGAGGCATAGAGGGGAAGCATGCACAAGTTGGAAGGACCCTGGCCTTTTCCCCAAGAACTATATTAATGAGGTTGAACCAAAAGCATTAGATCCCTCAGATGTTTATCAGCAGATGGAGATTATGTATTCGCAACGTTGGCGTGAGAGGGGTGACTTTACTGCCAAGTCAGTTGCTTCAGATGGTATTCCACCACGCTTCTTGAGGGAGAAAGGGTGGAGGGTGTACAGGAGAACACCCTATAATTATGAATTAGATGAAGCTCAAGGGCTTGACTCTTCACTGCGGTCGCGCCTTCCAGGGTTTGACGTTCCATTATCATTGAATCAGAACGACTGTTCCGAAGCTGTGGTGGTTGGCAAGTGGTATTGTCCTTTCATGTTTATCAAAGAAGGAGGAGTGAGGTTGAAGGAGCAAATGAAAACGTGTGTGTTCTATGAAATGAGACTTGAGCAAAGGTGGGAGAAAATTTTCAGCTCTGACAATGAAGGAGCAAGTAGTGGTGTGTTTGTGGATACCTTTGTTCCAAGAGAGGTGGTTTTTGTTGGTGGAAATGAAGCTGTTTGTGAAGATAGAGAGAGAAATGTGAGTGAAGGGTTCATGTGGTTTAAGAGTTCGGACGGTGTGGAAGGAGAAAAAAGTGTGGGTTTGAGCATGAAAATTGTTGAGAGGATGAAATGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGATGAAAGACAAGTCAGGGTTGAAAGAGTAGAAGAGTTTGGAGGGACTGGAGAGTGGAAGAAATTTGCTTGTTATGTATTGGTAGAGAGGTTTTTGTTGAAGAGAATGCATGAGAGATTAGCAGTTTTGGCATATGATTTCAAGCACCCTCACCAAATTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

390

Amino Acids

45.43

Weight (kDa)

5.48

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 108 3.1e-34 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AccII CGCG 1 cut(s) 577
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 2 cut(s) 280, 571
AclI AACGTT 1 cut(s) 421
AclWI GGATC 1 cut(s) 371
AcsI RAATTY 3 cut(s) 76, 753, 1058
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 2 cut(s) 93, 512
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 6 cut(s) 362, 610, 694, 1019, 1096, 1138
AjnI CCWGG 2 cut(s) 325, 583
AloI GAACNNNNNNTCC 4 cut(s) 35, 67, 608, 640
AluBI AGCT 5 cut(s) 160, 548, 632, 762, 845
AluI AGCT 5 cut(s) 160, 548, 632, 762, 845
Alw26I GTCTC 2 cut(s) 42, 724
AlwI GGATC 1 cut(s) 371
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 2 cut(s) 14, 328
ApeKI GCWGC 2 cut(s) 157, 160
ApoI RAATTY 3 cut(s) 76, 753, 1058
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 71, 322
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 449, 1139
AvaII GGWCC 2 cut(s) 71, 322
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BauI CACGAG 1 cut(s) 121
BbvI GCAGC 2 cut(s) 147, 169
BccI CCATC 3 cut(s) 394, 461, 978
BciT130I CCWGG 2 cut(s) 327, 585
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 42, 724
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 3 cut(s) 158, 161, 280
BlsI GCNGC 3 cut(s) 159, 162, 281
Bme1390I CCNGG 3 cut(s) 65, 327, 585
Bme18I GGWCC 2 cut(s) 71, 322
BmgT120I GGNCC 2 cut(s) 71, 322
BmiI GGNNCC 2 cut(s) 72, 324
BmrFI CCNGG 3 cut(s) 65, 327, 585
BpmI CTGGAG 1 cut(s) 1065
BpuEI CTTGAG 3 cut(s) 508, 534, 755
BpuMI CCSGG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 63, 325, 584
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 395, 425, 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 233, 1048
Bse8I GATNNNNATC 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 2 cut(s) 327, 585
BseDI CCNNGG 3 cut(s) 63, 325, 584
BseGI GGATG 3 cut(s) 963, 989, 1003
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 185, 396
BseNI ACTGG 2 cut(s) 233, 1048
BseRI GAGGAG 1 cut(s) 696
BseXI GCAGC 2 cut(s) 147, 169
Bsh1236I CGCG 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 575
BshFI GGCC 2 cut(s) 16, 330
BsiEI CGRYCG 1 cut(s) 575
BsiSI CCGG 2 cut(s) 41, 65
BslFI GGGAC 2 cut(s) 84, 1054
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 42, 724
BsmFI GGGAC 2 cut(s) 84, 1054
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 2 cut(s) 16, 330
Bso31I GGTCTC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 2 cut(s) 241, 376
BspACI CCGC 2 cut(s) 280, 571
BspANI GGCC 2 cut(s) 16, 330
BspCNI CTCAG 2 cut(s) 184, 395
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 72, 324
BspPI GGATC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 2 cut(s) 233, 1048
BssECI CCNNGG 3 cut(s) 63, 325, 584
BssMI GATC 2 cut(s) 241, 376
BssSI CACGAG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 327, 585
Bst4CI ACNGT 4 cut(s) 51, 190, 623, 908
Bst6I CTCTTC 3 cut(s) 568, 1023, 1091
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 171, 382
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 3 cut(s) 963, 989, 1003
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 2 cut(s) 244, 379
BstMAI GTCTC 2 cut(s) 42, 724
BstMBI GATC 2 cut(s) 241, 376
BstMCI CGRYCG 1 cut(s) 575
BstMWI GCNNNNNNNGC 3 cut(s) 244, 424, 1124
BstNI CCWGG 2 cut(s) 327, 585
BstNSI RCATGY 1 cut(s) 309
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 63, 325, 583
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 147, 169
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 16, 330
BtsCI GGATG 3 cut(s) 963, 989, 1003
BtsI GCAGTG 2 cut(s) 289, 566
BtsIMutI CAGTG 3 cut(s) 240, 289, 566
Cac8I GCNNGC 1 cut(s) 307
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 2 cut(s) 71, 322
Csp6I GTAC 2 cut(s) 92, 511
CspCI CAANNNNNGTGG 4 cut(s) 468, 503, 801, 836
CviAII CATG 6 cut(s) 178, 306, 664, 886, 940, 1106
CviJI RGCY 9 cut(s) 16, 160, 247, 330, 548, 556, 632, 762, 845
CviKI_1 RGCY 9 cut(s) 16, 160, 247, 330, 548, 556, 632, 762, 845
CviQI GTAC 2 cut(s) 92, 511
DdeI CTNAG 2 cut(s) 171, 382
DpnI GATC 2 cut(s) 243, 378
DpnII GATC 2 cut(s) 241, 376
Eam1104I CTCTTC 3 cut(s) 568, 1023, 1091
EarI CTCTTC 3 cut(s) 568, 1023, 1091
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 71, 322
Eco57I CTGAAG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 325, 583
EcoT22I ATGCAT 1 cut(s) 1107
FaeI CATG 6 cut(s) 181, 309, 667, 889, 943, 1109
FaqI GGGAC 2 cut(s) 84, 1054
FatI CATG 6 cut(s) 177, 305, 663, 885, 939, 1105
FauNDI CATATG 1 cut(s) 1129
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 158, 161, 280
FokI GGATG 3 cut(s) 970, 996, 1010
Fsp4HI GCNGC 3 cut(s) 158, 161, 280
GlaI GCGC 1 cut(s) 578
GluI GCNGC 3 cut(s) 158, 161, 280
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 2 cut(s) 16, 330
HapII CCGG 2 cut(s) 41, 65
HhaI GCGC 1 cut(s) 579
Hin1II CATG 6 cut(s) 181, 309, 667, 889, 943, 1109
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 3 cut(s) 107, 560, 610
HpaII CCGG 2 cut(s) 41, 65
HphI GGTGA 2 cut(s) 449, 1139
Hpy166II GTNNAC 1 cut(s) 511
Hpy188I TCNGA 8 cut(s) 131, 174, 385, 466, 615, 628, 766, 904
Hpy188III TCNNGA 2 cut(s) 41, 487
Hpy8I GTNNAC 1 cut(s) 511
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 8 cut(s) 235, 313, 590, 671, 688, 767, 872, 908
HpyCH4III ACNGT 4 cut(s) 51, 190, 623, 908
HpyCH4IV ACGT 3 cut(s) 421, 594, 710
HpyCH4V TGCA 3 cut(s) 138, 309, 1105
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 424, 1124
HpyF3I CTNAG 2 cut(s) 171, 382
HpySE526I ACGT 3 cut(s) 421, 594, 710
Hsp92II CATG 6 cut(s) 181, 309, 667, 889, 943, 1109
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 241, 376
LmnI GCTCC 4 cut(s) 697, 776, 967, 1158
Lsp1109I GCAGC 2 cut(s) 147, 169
MaeII ACGT 3 cut(s) 421, 594, 710
MaeIII GTNAC 4 cut(s) 7, 45, 220, 437
MalI GATC 2 cut(s) 243, 378
MboI GATC 2 cut(s) 241, 376
MboII GAAGA 8 cut(s) 116, 215, 246, 555, 866, 1040, 1066, 1108
MflI RGATCY 1 cut(s) 376
MluCI AATT 7 cut(s) 76, 529, 536, 753, 945, 1058, 1152
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 3 cut(s) 172, 296, 961
Mph1103I ATGCAT 1 cut(s) 1107
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 5 cut(s) 153, 185, 210, 351, 894
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 41, 65
MspR9I CCNGG 3 cut(s) 65, 327, 585
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 2 cut(s) 327, 585
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 3 cut(s) 244, 424, 1124
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 1129
NdeII GATC 2 cut(s) 241, 376
NlaIII CATG 6 cut(s) 181, 309, 667, 889, 943, 1109
NlaIV GGNNCC 2 cut(s) 72, 324
NmuCI GTSAC 2 cut(s) 7, 437
NsiI ATGCAT 1 cut(s) 1107
NspI RCATGY 1 cut(s) 309
PaeI GCATGC 1 cut(s) 309
PceI AGGCCT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 2 cut(s) 107, 610
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 3 cut(s) 159, 162, 281
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 322
Psp6I CCWGG 2 cut(s) 325, 583
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 325, 583
PspN4I GGNNCC 2 cut(s) 72, 324
PspPI GGNCC 2 cut(s) 71, 322
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 2 cut(s) 93, 512
RsaNI GTAC 2 cut(s) 92, 511
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 5 cut(s) 153, 185, 210, 351, 894
SatI GCNGC 3 cut(s) 158, 161, 280
Sau3AI GATC 2 cut(s) 241, 376
Sau96I GGNCC 2 cut(s) 71, 322
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 3 cut(s) 65, 327, 585
SinI GGWCC 2 cut(s) 71, 322
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 487, 549, 734
SmoI CTYRAG 3 cut(s) 487, 549, 734
SphI GCATGC 1 cut(s) 309
Sse9I AATT 7 cut(s) 76, 529, 536, 753, 945, 1058, 1152
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 2 cut(s) 280, 571
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 63, 325, 583
TaaI ACNGT 4 cut(s) 51, 190, 623, 908
TaiI ACGT 3 cut(s) 424, 597, 713
TasI AATT 7 cut(s) 76, 529, 536, 753, 945, 1058, 1152
TatI WGTACW 2 cut(s) 91, 510
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 2 cut(s) 107, 610
Tru1I TTAA 5 cut(s) 153, 185, 210, 351, 894
Tru9I TTAA 5 cut(s) 153, 185, 210, 351, 894
TscAI CASTG 3 cut(s) 240, 289, 573
TseFI GTSAC 2 cut(s) 7, 437
TseI GCWGC 2 cut(s) 157, 160
Tsp45I GTSAC 2 cut(s) 7, 437
TspRI CASTG 3 cut(s) 240, 289, 573
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 71, 322
VspI ATTAAT 1 cut(s) 351
XapI RAATTY 3 cut(s) 76, 753, 1058
XceI RCATGY 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 755
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.