MD16G1057900.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001480
Physical Location & Seq
Forward (+)
4132798 .. 4134460
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1057900.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGTATGTGACAAGGCCTCTGTCTGTGTGTAGAAGATCTCCTCAATCACTGTCTCTACCGCCACCGGAGGGGCCAAATTCTGGTTATCTTGTGCTCCATGATGACGATTCAGTTGAGATAAACTGTTGCGGATGCGAAGATGACAGCGTCAACGGCCTGCCTTTCCCTCAGAACAAGGATCTAAGAGTTGGATATGGCTCAAATGGCGATGATGTTGCATTCATTCCCGTGCTTAATCAGCCCTTGTCTTCCAATCGTTACCATGTCATACTTCGAACAGTTCGCCATAAGGGGGAAGCATGCACAAACACGAGGGAAGAGGACACGTATATTGGCTGTTGCGGATGTAAAAATATTCCAGATGCTAAACCAAAGCCGTTGGATCCGTCAGACATATATCAACAAATTGAGATAGTTCAAAGGGGGAGCGACCGCAGTCAGTTTTTTGCCAAGTCTGTTGATCCAGATGGTTTTCCTCCTTACTTCTTGAGAAGGAAAGGGTGGCGCGTGACAATGAGCAAGCCGCGTCGTTACCGATTAGGTGAAGCCTCGGGACTCAACTCCTCGCTACGAGCAAGCCTTCCCGGGTTTGAGTTTCCATTATCACATGATTGCTCTGAAGTAGTGTGTGTTGGCAAGTGGTATTGTCCTTTCATGCTTGTCAAGGAAGGAGGGGTGAAGTTGAAGGACCAAATGAAATATTCTATGTACTACGAAATTAAACTTGAGCAAAGATGGGAAAAGATTTTCGACACGGTTAATGAGAACGCTGAAAGCAAAAAAAATCCTGCTGTGTTTGTGGATGCTTTTGTTCAAAGGGAGGTGGTCTTTGTGGGTGGAAATGAGGCTGTTTGGGATGAAAGAAATGAGGATCCGGGTGCGGGTGATATGTTCATGTGGTTTAAAAGTTTTGATGGCGCGGGACGAGAAACAAGTGTGGCATTGAGCATGAAAGTCGTAGAGAGAGTGAAATGGGAGCAAGAAAGAGTTGGATGGGTTGGCGGGGATGAAAGGAAAGTGAGGGTGGAGAGAGTGGAAGAGTTTGGGGGGACGGCTGGTGGCGGGTGGAAGAGATTTAGTTGTTATGTGTTGGTAGAGAGGTTTGTACTGAAGAGAATGTCTACGACTGGAAGCGCAGCGGTACTACTCGCATATGATTTCAAGCACACTCACCAGATTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

399

Amino Acids

45.2

Weight (kDa)

6.99

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 113 1.3e-28 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 1121
AccII CGCG 3 cut(s) 507, 526, 920
AclWI GGATC 6 cut(s) 186, 377, 390, 455, 866, 879
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 2 cut(s) 639, 1130
AfaI GTAC 3 cut(s) 710, 1107, 1143
AfiI CCNNNNNNNGG 4 cut(s) 68, 80, 292, 881
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 4 cut(s) 419, 685, 815, 1162
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 6 cut(s) 186, 377, 390, 455, 866, 879
Ama87I CYCGRG 2 cut(s) 550, 584
AoxI GGCC 3 cut(s) 14, 71, 154
ApeKI GCWGC 1 cut(s) 1136
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 3 cut(s) 507, 920, 1136
AspS9I GGNCC 2 cut(s) 71, 688
AsuC2I CCSGG 3 cut(s) 585, 586, 876
AsuHPI GGTGA 4 cut(s) 554, 688, 896, 1163
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 2 cut(s) 550, 584
AvaII GGWCC 1 cut(s) 688
BamHI GGATCC 2 cut(s) 382, 871
BauI CACGAG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 1148
BccI CCATC 4 cut(s) 461, 729, 908, 987
BceAI ACGGC 3 cut(s) 169, 361, 1068
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 937, 971
BcnI CCSGG 3 cut(s) 585, 586, 876
BcoDI GTCTC 1 cut(s) 57
BglII AGATCT 1 cut(s) 35
BisI GCNGC 2 cut(s) 524, 1137
BlsI GCNGC 2 cut(s) 525, 1138
Bme1390I CCNGG 3 cut(s) 585, 586, 876
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 550, 584
BmgT120I GGNCC 2 cut(s) 71, 688
BmiI GGNNCC 3 cut(s) 72, 384, 873
BmrFI CCNGG 3 cut(s) 585, 586, 876
BmsI GCATC 3 cut(s) 122, 352, 793
BoxI GACNNNNGTC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 508, 746
BpuMI CCSGG 3 cut(s) 585, 586, 876
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 549, 584
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 80, 292, 881
Bse1I ACTGG 1 cut(s) 1132
BseDI CCNNGG 2 cut(s) 549, 584
BseGI GGATG 6 cut(s) 137, 350, 808, 862, 998, 1012
BseLI CCNNNNNNNGG 4 cut(s) 68, 80, 292, 881
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 1132
BseRI GAGGAG 2 cut(s) 30, 553
BseXI GCAGC 1 cut(s) 1148
Bsh1236I CGCG 3 cut(s) 507, 526, 920
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 3 cut(s) 16, 73, 156
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 550, 584
BsiSI CCGG 3 cut(s) 65, 585, 875
BslFI GGGAC 3 cut(s) 567, 936, 1063
BslI CCNNNNNNNGG 4 cut(s) 68, 80, 292, 881
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 3 cut(s) 567, 936, 1063
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 16, 73, 156
BsoBI CYCGRG 2 cut(s) 550, 584
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 5 cut(s) 35, 178, 382, 460, 871
BspANI GGCC 3 cut(s) 16, 73, 156
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 3 cut(s) 507, 526, 920
BspLI GGNNCC 3 cut(s) 72, 384, 873
BspPI GGATC 6 cut(s) 186, 377, 390, 455, 866, 879
BspT104I TTCGAA 1 cut(s) 274
BsrI ACTGG 1 cut(s) 1132
BssECI CCNNGG 2 cut(s) 549, 584
BssMI GATC 5 cut(s) 35, 178, 382, 460, 871
BssSI CACGAG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 310
Bst4CI ACNGT 4 cut(s) 51, 125, 280, 757
Bst6I CTCTTC 4 cut(s) 312, 1032, 1064, 1106
BstBAI YACGTR 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 4 cut(s) 158, 301, 521, 577
BstDEI CTNAG 2 cut(s) 168, 182
BstF5I GGATG 6 cut(s) 137, 350, 808, 862, 998, 1012
BstFNI CGCG 3 cut(s) 507, 526, 920
BstHHI GCGC 3 cut(s) 507, 920, 1136
BstKTI GATC 5 cut(s) 38, 181, 385, 463, 874
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 5 cut(s) 35, 178, 382, 460, 871
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 153, 204, 238
BstNSI RCATGY 1 cut(s) 303
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 583, 584, 874
BstUI CGCG 3 cut(s) 507, 526, 920
BstV1I GCAGC 1 cut(s) 1148
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 4 cut(s) 35, 178, 382, 871
BstYI RGATCY 4 cut(s) 35, 178, 382, 871
BsuRI GGCC 3 cut(s) 16, 73, 156
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 6 cut(s) 137, 350, 808, 862, 998, 1012
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 4 cut(s) 158, 301, 521, 577
CfoI GCGC 3 cut(s) 507, 920, 1136
Cfr13I GGNCC 2 cut(s) 71, 688
Cfr9I CCCGGG 1 cut(s) 584
CseI GACGC 2 cut(s) 136, 515
Csp6I GTAC 3 cut(s) 709, 1106, 1142
CviAII CATG 7 cut(s) 98, 263, 300, 608, 655, 895, 949
CviQI GTAC 3 cut(s) 709, 1106, 1142
DdeI CTNAG 2 cut(s) 168, 182
DpnI GATC 5 cut(s) 37, 180, 384, 462, 873
DpnII GATC 5 cut(s) 35, 178, 382, 460, 871
DraI TTTAAA 1 cut(s) 904
Eam1104I CTCTTC 4 cut(s) 312, 1032, 1064, 1106
EarI CTCTTC 4 cut(s) 312, 1032, 1064, 1106
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 2 cut(s) 639, 1130
Eco88I CYCGRG 2 cut(s) 550, 584
FaeI CATG 7 cut(s) 101, 266, 303, 611, 658, 898, 952
FaqI GGGAC 3 cut(s) 567, 936, 1063
FatI CATG 7 cut(s) 97, 262, 299, 607, 654, 894, 948
FauI CCCGC 4 cut(s) 874, 913, 995, 1055
FauNDI CATATG 1 cut(s) 1153
FblI GTMKAC 1 cut(s) 1121
Fnu4HI GCNGC 2 cut(s) 524, 1137
FokI GGATG 6 cut(s) 144, 357, 815, 869, 1005, 1019
Fsp4HI GCNGC 2 cut(s) 524, 1137
GlaI GCGC 3 cut(s) 506, 919, 1135
GluI GCNGC 2 cut(s) 524, 1137
HaeIII GGCC 3 cut(s) 16, 73, 156
HapII CCGG 3 cut(s) 65, 585, 875
HgaI GACGC 2 cut(s) 136, 515
HhaI GCGC 3 cut(s) 507, 920, 1136
Hin1II CATG 7 cut(s) 101, 266, 303, 611, 658, 898, 952
Hin6I GCGC 3 cut(s) 505, 918, 1134
HinP1I GCGC 3 cut(s) 505, 918, 1134
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 2 cut(s) 107, 555
HpaII CCGG 3 cut(s) 65, 585, 875
HphI GGTGA 4 cut(s) 554, 688, 896, 1163
Hpy166II GTNNAC 2 cut(s) 151, 1122
Hpy188I TCNGA 3 cut(s) 171, 391, 619
Hpy188III TCNNGA 4 cut(s) 359, 464, 487, 552
Hpy8I GTNNAC 2 cut(s) 151, 1122
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 4 cut(s) 486, 590, 662, 679
HpyCH4III ACNGT 4 cut(s) 51, 125, 280, 757
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 218, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 204, 238
HpyF3I CTNAG 2 cut(s) 168, 182
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 7 cut(s) 101, 266, 303, 611, 658, 898, 952
HspAI GCGC 3 cut(s) 505, 918, 1134
Kzo9I GATC 5 cut(s) 35, 178, 382, 460, 871
LmnI GCTCC 4 cut(s) 99, 426, 976, 1182
Lsp1109I GCAGC 1 cut(s) 1148
LweI GCATC 3 cut(s) 122, 352, 793
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 4 cut(s) 7, 257, 508, 530
MalI GATC 5 cut(s) 37, 180, 384, 462, 873
MboI GATC 5 cut(s) 35, 178, 382, 460, 871
MboII GAAGA 7 cut(s) 45, 149, 240, 329, 1049, 1081, 1123
MflI RGATCY 4 cut(s) 35, 178, 382, 871
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 76, 405, 717
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 3 cut(s) 169, 360, 970
MseI TTAA 4 cut(s) 234, 720, 759, 903
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 3 cut(s) 65, 585, 875
MspR9I CCNGG 3 cut(s) 585, 586, 876
Mva1269I GAATGC 1 cut(s) 218
MvnI CGCG 3 cut(s) 507, 526, 920
MwoI GCNNNNNNNGC 3 cut(s) 153, 204, 238
NciI CCSGG 3 cut(s) 585, 586, 876
NdeI CATATG 1 cut(s) 1153
NdeII GATC 5 cut(s) 35, 178, 382, 460, 871
NlaIII CATG 7 cut(s) 101, 266, 303, 611, 658, 898, 952
NlaIV GGNNCC 3 cut(s) 72, 384, 873
NmuCI GTSAC 2 cut(s) 7, 508
NspI RCATGY 1 cut(s) 303
NspV TTCGAA 1 cut(s) 274
PaeI GCATGC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 16
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 525, 1138
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
Ppu21I YACGTR 1 cut(s) 327
PshAI GACNNNNGTC 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 72, 384, 873
PspPI GGNCC 2 cut(s) 71, 688
PsuI RGATCY 4 cut(s) 35, 178, 382, 871
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 3 cut(s) 710, 1107, 1143
RsaNI GTAC 3 cut(s) 709, 1106, 1142
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 4 cut(s) 234, 720, 759, 903
SatI GCNGC 2 cut(s) 524, 1137
Sau3AI GATC 5 cut(s) 35, 178, 382, 460, 871
Sau96I GGNCC 2 cut(s) 71, 688
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 3 cut(s) 585, 586, 876
SduI GDGCHC 1 cut(s) 96
SetI ASST 4 cut(s) 329, 544, 825, 1103
SfaNI GCATC 3 cut(s) 122, 352, 793
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 1 cut(s) 688
SmaI CCCGGG 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 487, 725
SmoI CTYRAG 2 cut(s) 487, 725
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 76, 405, 717
SseBI AGGCCT 1 cut(s) 16
SspI AATATT 2 cut(s) 355, 701
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 583, 584, 874
TaaI ACNGT 4 cut(s) 51, 125, 280, 757
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 274, 750
TasI AATT 3 cut(s) 76, 405, 717
TatI WGTACW 2 cut(s) 708, 1105
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 4 cut(s) 234, 720, 759, 903
Tru9I TTAA 4 cut(s) 234, 720, 759, 903
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 7, 508
TseI GCWGC 1 cut(s) 1136
Tsp45I GTSAC 2 cut(s) 7, 508
TspDTI ATGAA 7 cut(s) 211, 643, 710, 873, 883, 965, 1023
TspGWI ACGGA 1 cut(s) 375
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 303
XmaI CCCGGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.