MD13G1051600.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001480
Physical Location & Seq
Reverse (-)
3685540 .. 3687151
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1051600.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGTATGTGACAAAGCCTCTGTCTGCTTGTCGAATGTCTCCTCAGTCCCTGTCTCTACGGCCACCGGAGGGGCCAAATTCTGGTTATCTTGTACTCCATGATGAAGAACGGGTTAAGGTAACATGCTGCGGATGCGCTGTTGGCACTGATGACGTGGTCAGAGACCTGCCTTTCCCTCAGAACTACGATATAGGTGTTGGATATGACTCGGATGAAGACGCTGTTGCCTTCATTCCAGTGCTTGATCAGCCCTTGTCTTCCAATCGATACCATGTCATACTTCGGAGTGGGAAGCAAATGGGGGAAGCATGCACAAATTCAAGAAAAGAAGACGTGGCTGAGACTGGCTGTTGCGGCGGTAAATCTATTCCAGATGCTATGCCAAAACCGTTGGATCCGTCCGACATAAACCAGCAAGTTCAAATAGTTCGTACGGAGAAGGGCAGCAATTGTTTCTTTGCCAAGTCTGTTGATCAAGAGGGGTTTCCTCCTCTCTTCTTGAGGAGAAAAGGGTGGAATGCGAGAATGAGAGGGCCGCATCATTTCCAATTGAGTGAAGCCTCAGGAATCAACTCTTCTCTACGGGCAAGCCTTCCGCAGTTCGATTTTCCATTGTCGTATGATTTCTCTGCAGCTGTGGGTGTTGGTAAGTGGTATTGTCCTTTCATGTTTGTTAGGGTAGGAGGAGTGAAGTTGAAGGACCAAATGAAAAAATGTATGTTCTATGAAATTATACTTGAGCAACGATGGGAAAAGATTTTCGACAGTGCTTATAACAACGCTGAAGGAAAATATAATGGTGTTGCGTTTGTGGATGCTTTCGTTCAAAAAGAGGCGGTTTTTGTTGACCGAAAGGAGGCTTTTTGGACTGAAAAAAATGTGGGTAAAGACAGGTTCATGTGGTTCAAGAATTATTTCAATGGTGCGGGAGGAGAAACAAGAGTGGGATTGAGCATGAAAGTTGTGGAGAGGATGAAATGGGAACAAGAAAGAGTTGGATGGATTGGTGGGGGTGAAAAGAAAGTGAGGGTGGAGAGAGTGGAAGCGTTTGAGGTGACGGGTGGTGGCGAGTGGAAGCGATTTGGTAGTTATGTATTGGTAGAGAGGTTTATATTGAAACGAATGTCAACGAATGGAAACTCGGAAGTACTACTCACATATGAATTCAAGCACACGCACCAGATTCGAACCAAATGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

401

Amino Acids

45.45

Weight (kDa)

8.4

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 118 2e-28 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
Acc36I ACCTGC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 7 cut(s) 129, 354, 357, 536, 596, 836, 926
AclWI GGATC 2 cut(s) 389, 402
AcoI YGGCCR 1 cut(s) 59
AcsI RAATTY 3 cut(s) 76, 316, 1163
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 3 cut(s) 93, 433, 1149
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 856
AgsI TTSAA 8 cut(s) 321, 422, 697, 827, 907, 919, 1117, 1168
AjiI CACGTC 2 cut(s) 154, 334
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
Alw26I GTCTC 4 cut(s) 42, 57, 156, 335
AlwI GGATC 2 cut(s) 389, 402
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 3 cut(s) 59, 71, 533
ApeKI GCWGC 3 cut(s) 126, 444, 632
ApoI RAATTY 3 cut(s) 76, 316, 1163
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 914
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 3 cut(s) 71, 533, 700
AsuHPI GGTGA 2 cut(s) 1025, 1066
AsuII TTCGAA 1 cut(s) 1186
AvaII GGWCC 1 cut(s) 700
AxyI CCTNAGG 1 cut(s) 562
BamHI GGATCC 1 cut(s) 394
BbsI GAAGAC 3 cut(s) 222, 249, 336
BbvI GCAGC 3 cut(s) 113, 456, 644
BccI CCATC 2 cut(s) 741, 993
BceAI ACGGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 1166, 1200
BclI TGATCA 2 cut(s) 244, 472
BcoDI GTCTC 4 cut(s) 42, 57, 156, 335
BfmI CTRYAG 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 5 cut(s) 127, 355, 445, 536, 633
BlsI GCNGC 5 cut(s) 128, 356, 446, 537, 634
BmcAI AGTACT 1 cut(s) 1149
Bme18I GGWCC 1 cut(s) 700
BmgBI CACGTC 2 cut(s) 154, 334
BmgT120I GGNCC 3 cut(s) 71, 533, 700
BmiI GGNNCC 2 cut(s) 72, 396
BmsI GCATC 4 cut(s) 122, 364, 547, 805
BpiI GAAGAC 3 cut(s) 222, 249, 336
Bpu14I TTCGAA 1 cut(s) 1186
BpuEI CTTGAG 2 cut(s) 520, 758
Bsa29I ATCGAT 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 856
Bse1I ACTGG 2 cut(s) 236, 349
Bse21I CCTNAGG 1 cut(s) 562
BseCI ATCGAT 1 cut(s) 265
BseGI GGATG 5 cut(s) 137, 217, 820, 978, 1004
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 856
BseMII CTCAG 4 cut(s) 56, 191, 330, 576
BseNI ACTGG 2 cut(s) 236, 349
BseRI GAGGAG 5 cut(s) 30, 480, 517, 699, 945
BseXI GCAGC 3 cut(s) 113, 456, 644
BshFI GGCC 3 cut(s) 61, 73, 535
BshVI ATCGAT 1 cut(s) 265
BsiSI CCGG 1 cut(s) 65
BsiWI CGTACG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 856
BsmAI GTCTC 4 cut(s) 42, 57, 156, 335
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 3 cut(s) 61, 73, 535
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 1186
Bsp143I GATC 3 cut(s) 244, 394, 472
BspACI CCGC 7 cut(s) 129, 354, 357, 536, 596, 836, 926
BspANI GGCC 3 cut(s) 61, 73, 535
BspCNI CTCAG 4 cut(s) 55, 190, 331, 575
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 72, 396
BspMAI CTGCAG 1 cut(s) 634
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 389, 402
BspT104I TTCGAA 1 cut(s) 1186
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 2 cut(s) 236, 349
BssMI GATC 3 cut(s) 244, 394, 472
Bst4CI ACNGT 2 cut(s) 390, 767
Bst6I CTCTTC 2 cut(s) 500, 580
BstBI TTCGAA 1 cut(s) 1186
BstC8I GCNNGC 2 cut(s) 310, 589
BstDEI CTNAG 4 cut(s) 42, 177, 339, 562
BstF5I GGATG 5 cut(s) 137, 217, 820, 978, 1004
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 247, 397, 475
BstMAI GTCTC 4 cut(s) 42, 57, 156, 335
BstMBI GATC 3 cut(s) 244, 394, 472
BstMWI GCNNNNNNNGC 4 cut(s) 132, 141, 247, 354
BstNSI RCATGY 2 cut(s) 126, 312
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 3 cut(s) 113, 456, 644
BstV2I GAAGAC 3 cut(s) 222, 249, 336
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
Bsu15I ATCGAT 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 562
BsuRI GGCC 3 cut(s) 61, 73, 535
BsuTUI ATCGAT 1 cut(s) 265
BtrI CACGTC 2 cut(s) 154, 334
BtsCI GGATG 5 cut(s) 137, 217, 820, 978, 1004
BtsIMutI CAGTG 3 cut(s) 144, 243, 772
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 310, 589
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 71, 533, 700
ClaI ATCGAT 1 cut(s) 265
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 92, 432, 1148
CviAII CATG 7 cut(s) 98, 123, 272, 309, 667, 898, 955
CviQI GTAC 3 cut(s) 92, 432, 1148
DdeI CTNAG 4 cut(s) 42, 177, 339, 562
DpnI GATC 3 cut(s) 246, 396, 474
DpnII GATC 3 cut(s) 244, 394, 472
EaeI YGGCCR 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 500, 580
EarI CTCTTC 2 cut(s) 500, 580
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 804
Eco81I CCTNAGG 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 1163
FaeI CATG 7 cut(s) 101, 126, 275, 312, 670, 901, 958
FaqI GGGAC 1 cut(s) 31
FatI CATG 7 cut(s) 97, 122, 271, 308, 666, 897, 954
FauI CCCGC 1 cut(s) 919
FauNDI CATATG 1 cut(s) 1159
FbaI TGATCA 2 cut(s) 244, 472
Fnu4HI GCNGC 5 cut(s) 127, 355, 445, 536, 633
FokI GGATG 5 cut(s) 144, 224, 827, 985, 1011
Fsp4HI GCNGC 5 cut(s) 127, 355, 445, 536, 633
GlaI GCGC 1 cut(s) 136
GluI GCNGC 5 cut(s) 127, 355, 445, 536, 633
HaeIII GGCC 3 cut(s) 61, 73, 535
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 137
Hin1II CATG 7 cut(s) 101, 126, 275, 312, 670, 901, 958
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 847, 1128
HindII GTYRAC 2 cut(s) 847, 1128
HinfI GANTC 3 cut(s) 206, 567, 1183
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 1025, 1066
Hpy166II GTNNAC 2 cut(s) 847, 1128
Hpy188I TCNGA 6 cut(s) 161, 180, 211, 285, 403, 1144
Hpy188III TCNNGA 6 cut(s) 321, 371, 476, 499, 564, 907
Hpy8I GTNNAC 2 cut(s) 847, 1128
HpyAV CCTTC 5 cut(s) 238, 433, 602, 691, 779
HpyCH4III ACNGT 2 cut(s) 390, 767
HpyCH4IV ACGT 2 cut(s) 153, 333
HpyCH4V TGCA 2 cut(s) 312, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 141, 247, 354
HpyF3I CTNAG 4 cut(s) 42, 177, 339, 562
HpySE526I ACGT 2 cut(s) 153, 333
Hsp92II CATG 7 cut(s) 101, 126, 275, 312, 670, 901, 958
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 2 cut(s) 244, 472
Kzo9I GATC 3 cut(s) 244, 394, 472
Lsp1109I GCAGC 3 cut(s) 113, 456, 644
LweI GCATC 4 cut(s) 122, 364, 547, 805
MaeII ACGT 2 cut(s) 153, 333
MaeIII GTNAC 3 cut(s) 7, 118, 1054
MalI GATC 3 cut(s) 246, 396, 474
MboI GATC 3 cut(s) 244, 394, 472
MboII GAAGA 6 cut(s) 116, 227, 249, 341, 487, 567
MfeI CAATTG 2 cut(s) 448, 548
MflI RGATCY 1 cut(s) 394
MluCI AATT 7 cut(s) 76, 316, 448, 548, 729, 910, 1163
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 4 cut(s) 178, 372, 426, 976
MroXI GAANNNNTTC 1 cut(s) 914
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 65
MunI CAATTG 2 cut(s) 448, 548
Mva1269I GAATGC 1 cut(s) 523
MwoI GCNNNNNNNGC 4 cut(s) 132, 141, 247, 354
NdeI CATATG 1 cut(s) 1159
NdeII GATC 3 cut(s) 244, 394, 472
NlaIII CATG 7 cut(s) 101, 126, 275, 312, 670, 901, 958
NlaIV GGNNCC 2 cut(s) 72, 396
NmuCI GTSAC 2 cut(s) 7, 1054
NspI RCATGY 2 cut(s) 126, 312
NspV TTCGAA 1 cut(s) 1186
PaeI GCATGC 1 cut(s) 312
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 2 cut(s) 567, 1183
Pfl23II CGTACG 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 5 cut(s) 128, 356, 446, 537, 634
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsiI TTATAA 1 cut(s) 774
PspLI CGTACG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 72, 396
PspPI GGNCC 3 cut(s) 71, 533, 700
PstI CTGCAG 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 93, 433, 1149
RsaNI GTAC 3 cut(s) 92, 432, 1148
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 127, 355, 445, 536, 633
Sau3AI GATC 3 cut(s) 244, 394, 472
Sau96I GGNCC 3 cut(s) 71, 533, 700
ScaI AGTACT 1 cut(s) 1149
SchI GAGTC 1 cut(s) 200
SetI ASST 9 cut(s) 120, 156, 168, 196, 336, 637, 896, 1056, 1109
SfaNI GCATC 4 cut(s) 122, 364, 547, 805
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 1186
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 499, 737
SmoI CTYRAG 2 cut(s) 499, 737
SphI GCATGC 1 cut(s) 312
Sse9I AATT 7 cut(s) 76, 316, 448, 548, 729, 910, 1163
SsiI CCGC 7 cut(s) 129, 354, 357, 536, 596, 836, 926
TaaI ACNGT 2 cut(s) 390, 767
TaiI ACGT 2 cut(s) 156, 336
TaqI TCGA 5 cut(s) 31, 265, 603, 762, 1186
TaqII GACCGA 1 cut(s) 864
TasI AATT 7 cut(s) 76, 316, 448, 548, 729, 910, 1163
TatI WGTACW 2 cut(s) 91, 1147
TauI GCSGC 2 cut(s) 357, 538
TfiI GAWTC 2 cut(s) 567, 1183
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 3 cut(s) 151, 243, 772
TseFI GTSAC 2 cut(s) 7, 1054
TseI GCWGC 3 cut(s) 126, 444, 632
Tsp45I GTSAC 2 cut(s) 7, 1054
TspGWI ACGGA 2 cut(s) 387, 449
TspRI CASTG 3 cut(s) 151, 243, 772
Tth111I GACNNNGTC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 3 cut(s) 76, 316, 1163
XceI RCATGY 2 cut(s) 126, 312
XmnI GAANNNNTTC 1 cut(s) 914
ZrmI AGTACT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.