Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Forward (+)

29505086 .. 29506441

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTATGTGACCAAGCCTGTGTCTGTGTATAGAAGGTCTCCTCAGTCACTGTCATTGCCACCACCGGAAGGGCCAAATTCTGGTTATCTTATTCTCCATGACGACGAATTGGTGGAGATAACATGTTGCGGATGTGGTGATGACTGGGTTAAAGACCTGCCTTTCCCTCAGAACAAGGATCTAACAGTTCGACATGGCTCGGATGAAGACAAAGTTACATTCATCCCAGTGCTTAATCAACCCTTATCTTCCAATAGATACCATGTGATACTTCGGAGAGGGAACCATAAAGGGGAAGCGTGCACAAACTCAAGGGAAGAGGACATGGAGATTGACTGTTGCGGTTGTACCAATGTTCCAGATGCTAAACCAAAACCACTGGAACCATCAGACGGAGGGTCGTACCGTAGGGGTTACTTTGTTGCCAAATCTGTTGATCCAGATGGGTTTCCTCCTTCCTTCTTGAGGAGAAAATGGTGGACTGTGACCATGCACACACCCCGTCATTACCGATTGGGTGAAGCCTTAGGACTCAACTCCTCACTACGAGCAAGGCTTCTGGGGTTCGATTTTCCACTATCACATGATTGCTCTGAAGCTGTGCTTGTTGGTAAGTGGTATTGTCCTTTCATGTTTGTCAAGGAAGGAGGGGTGAGGCTGAAGGACCAAATGACAAAATGCATGTTCTATGAAATTAGACTTGAGCAAAGATGGGAAAAGATTTTGAATAGCGTTAACGAAAATGTTGAGGGAAAAAATAAAGGTGGCTGTGTTTGTGGATGCCTTTGTTCAAAGAGAGGTGGTTTTTGTTGGTGGAGTGAGGCTATTTGGGATGAAAGAAATAGGAGAAACAGGAGTGGGATTGAGCATAAAGTTGTAGAGAGAATGAAATGGGAACAAGAAAGAGTTGGATGGGTTGGTGGGAATGAAAGACGAGTGAGAGTGGAGAGAGTAGAAGAGTTTGGGGGGACAGGAGGCAGGTGGAAGAGATTTGGTTGTTATGTGTTGGTAGAGAGGTTTGTCTTGAAGAGAATGTCAATGAATGGAAGCTTAGCACTACTCACATATGATTTCAAGCACACACACCAGATTAGGAGCAAATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

370

Amino Acids

42.61

Weight (kDa)

8.78

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	969
Acc36I	ACCTGC	2 cut(s)	165, 969
AccB7I	CCANNNNNTGG	1 cut(s)	80
AciI	CCGC	2 cut(s)	129, 342
AclWI	GGATC	2 cut(s)	186, 431
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	615, 680
AfaI	GTAC	2 cut(s)	349, 404
AfiI	CCNNNNNNNGG	5 cut(s)	68, 80, 292, 392, 465
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	727, 792, 1027, 1075
AhdI	GACNNNNNGTC	1 cut(s)	397
AluBI	AGCT	2 cut(s)	599, 1050
AluI	AGCT	2 cut(s)	599, 1050
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	186, 431
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	71, 664
AsuHPI	GGTGA	3 cut(s)	149, 530, 664
AvaII	GGWCC	1 cut(s)	664
AxyI	CCTNAGG	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	305
BccI	CCATC	4 cut(s)	394, 437, 705, 906
BcoDI	GTCTC	1 cut(s)	42
BfuAI	ACCTGC	2 cut(s)	165, 969
BlpI	GCTNAGC	1 cut(s)	1051
Bme18I	GGWCC	1 cut(s)	664
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	71, 664
BmiI	GGNNCC	2 cut(s)	284, 384
BmrI	ACTGGG	2 cut(s)	154, 221
BmsI	GCATC	2 cut(s)	352, 770
BmuI	ACTGGG	2 cut(s)	154, 221
BpiI	GAAGAC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	1051
BpuEI	CTTGAG	3 cut(s)	295, 484, 722
BsaI	GGTCTC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 80, 292, 392, 465
Bse1I	ACTGG	3 cut(s)	149, 227, 384
Bse21I	CCTNAGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	53
BseGI	GGATG	6 cut(s)	137, 208, 222, 785, 838, 917
BseLI	CCNNNNNNNGG	5 cut(s)	68, 80, 292, 392, 465
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	56, 182
BseNI	ACTGG	3 cut(s)	149, 227, 384
BseRI	GAGGAG	3 cut(s)	30, 481, 529
BseSI	GKGCMC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	982
BslI	CCNNNNNNNGG	5 cut(s)	68, 80, 292, 392, 465
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	982
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	178, 436
Bsp1720I	GCTNAGC	1 cut(s)	1051
BspACI	CCGC	2 cut(s)	129, 342
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	55, 181
BspLI	GGNNCC	2 cut(s)	284, 384
BspMI	ACCTGC	2 cut(s)	165, 969
BspPI	GGATC	2 cut(s)	186, 431
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	149, 227, 384
BssMI	GATC	2 cut(s)	178, 436
Bst4CI	ACNGT	5 cut(s)	51, 187, 338, 407, 484
Bst6I	CTCTTC	4 cut(s)	312, 951, 980, 1022
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	4 cut(s)	42, 168, 526, 1051
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	6 cut(s)	137, 208, 222, 785, 838, 917
BstKTI	GATC	2 cut(s)	181, 439
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	178, 436
BstNSI	RCATGY	2 cut(s)	126, 685
BstSLI	GKGCMC	1 cut(s)	305
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	6 cut(s)	137, 208, 222, 785, 838, 917
BtsIMutI	CAGTG	3 cut(s)	47, 234, 377
BveI	ACCTGC	2 cut(s)	165, 969
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	71, 664
Csp6I	GTAC	2 cut(s)	348, 403
CviAII	CATG	9 cut(s)	98, 123, 194, 263, 325, 490, 584, 631, 682
CviQI	GTAC	2 cut(s)	348, 403
DdeI	CTNAG	4 cut(s)	42, 168, 526, 1051
DpnI	GATC	2 cut(s)	180, 438
DpnII	GATC	2 cut(s)	178, 436
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	4 cut(s)	312, 951, 980, 1022
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	4 cut(s)	312, 951, 980, 1022
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	615, 680
Eco81I	CCTNAGG	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	683
FaeI	CATG	9 cut(s)	101, 126, 197, 266, 328, 493, 587, 634, 685
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	982
FatI	CATG	9 cut(s)	97, 122, 193, 262, 324, 489, 583, 630, 681
FauNDI	CATATG	1 cut(s)	1066
FokI	GGATG	6 cut(s)	144, 209, 215, 792, 845, 924
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	9 cut(s)	101, 126, 197, 266, 328, 493, 587, 634, 685
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	1048
HinfI	GANTC	1 cut(s)	531
HpaI	GTTAAC	1 cut(s)	736
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	149, 530, 664
Hpy166II	GTNNAC	3 cut(s)	303, 480, 736
Hpy188I	TCNGA	5 cut(s)	171, 202, 276, 391, 595
Hpy188III	TCNNGA	4 cut(s)	359, 440, 463, 1024
Hpy8I	GTNNAC	3 cut(s)	303, 480, 736
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	6 cut(s)	27, 62, 465, 469, 638, 655
HpyCH4III	ACNGT	5 cut(s)	51, 187, 338, 407, 484
HpyCH4V	TGCA	3 cut(s)	303, 493, 681
HpyF3I	CTNAG	4 cut(s)	42, 168, 526, 1051
Hsp92II	CATG	9 cut(s)	101, 126, 197, 266, 328, 493, 587, 634, 685
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	178, 436
LmnI	GCTCC	1 cut(s)	1095
LweI	GCATC	2 cut(s)	352, 770
MaeIII	GTNAC	5 cut(s)	7, 45, 214, 413, 484
MalI	GATC	2 cut(s)	180, 438
MboI	GATC	2 cut(s)	178, 436
MboII	GAAGA	6 cut(s)	218, 240, 329, 968, 997, 1039
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	76, 107, 693
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	889
Mph1103I	ATGCAT	1 cut(s)	683
MseI	TTAA	3 cut(s)	150, 234, 735
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	1066
NdeII	GATC	2 cut(s)	178, 436
NlaIII	CATG	9 cut(s)	101, 126, 197, 266, 328, 493, 587, 634, 685
NlaIV	GGNNCC	2 cut(s)	284, 384
NmuCI	GTSAC	3 cut(s)	7, 45, 484
NsiI	ATGCAT	1 cut(s)	683
NspI	RCATGY	2 cut(s)	126, 685
PaqCI	CACCTGC	1 cut(s)	969
PciI	ACATGT	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	80
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PscI	ACATGT	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	284, 384
PspPI	GGNCC	2 cut(s)	71, 664
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	349, 404
RsaNI	GTAC	2 cut(s)	348, 403
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	150, 234, 735
Sau3AI	GATC	2 cut(s)	178, 436
Sau96I	GGNCC	2 cut(s)	71, 664
SchI	GAGTC	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	38, 159, 601, 766, 802, 983, 1019, 1052
SfaNI	GCATC	2 cut(s)	352, 770
SinI	GGWCC	1 cut(s)	664
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	310, 463, 701
SmoI	CTYRAG	3 cut(s)	310, 463, 701
Sse9I	AATT	3 cut(s)	76, 107, 693
SsiI	CCGC	2 cut(s)	129, 342
TaaI	ACNGT	5 cut(s)	51, 187, 338, 407, 484
TaqI	TCGA	2 cut(s)	190, 567
TasI	AATT	3 cut(s)	76, 107, 693
Tru1I	TTAA	3 cut(s)	150, 234, 735
Tru9I	TTAA	3 cut(s)	150, 234, 735
TscAI	CASTG	3 cut(s)	54, 234, 384
TseFI	GTSAC	3 cut(s)	7, 45, 484
Tsp45I	GTSAC	3 cut(s)	7, 45, 484
TspDTI	ATGAA	8 cut(s)	211, 219, 619, 705, 849, 902, 942, 1055
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	3 cut(s)	54, 234, 384
Van91I	CCANNNNNTGG	1 cut(s)	80
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	664
XagI	CCTNNNNNAGG	1 cut(s)	463
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	2 cut(s)	126, 685
Zsp2I	ATGCAT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.