Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

80321517 .. 80322762

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG573000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTATGTGACAAAACCTCTTTCCATGTACCGGAAATCTCCAAACACTCTTTCCATACAGCCACCAGATGCTCCTTATTCCGGTCATTTAGTAGTTACAGATGAAGAAGCAGAAGCCCAAGACTCATGTTGTTGGGGTATCTGCAAGCGTGACCAGATTAAGCAACTACCATTTCCACAGGACAAGATACTCACCGTTGTTTATACATCGGATTACCAAGAAGCATATACCACCAAAGTTTGGTTCATCCCGGTTCTTGATCAGCCTCTATCTTCTAATTGCTACTATGTTATCAAAGCAAATGGAAGACACAAAGGGAAAGCATGCAGATGTTCTAAAGAGAGGGACATAATGAATTGTTGCTTCAGAGACTTCGTGAGGGACAAGAAACCAACACTTTTGAATCTCAGAAACATATACCAACAGGTTAAGATTCATCGGCACCAAGGAGGTGGTTTTTTTGCGGAGTCTGTAGCTCCTGATGGTGTTCCTCCTAAATTTCTAAGAAGGAAAGGATGGGAAATCCGCAGCTCAAGTTTGTACCGATGGCAATTAAGCGATGCCTTGGGCCTCGATGCTTCCCTCCGATCACGTTTCCCTGACTTCAACTTTCCCATCTTTAAGAAACGTTCAGCTTTTAATGTTGTGGGCAAATGGTACAGTCCGTTTATGTATGTGAGAGAGAAAGCAACCATGAGACGCCAGATGAAGAAGACGAAATTTTACAGAATAACTCTCGAGCAGTGGTGGGAAGAGATTTACGCCTGTGGGAATACTAGCAACGAAGGCAATGTTGTGAATGTGGATGTAAGCGTGCAAAGGGAAGTGGCTTTCGTATCTGCCGTGGAAGCTGTCAAGGACGATAGAAATGGTCGTACTGGGTTCTCTTGGTTCAAGGCTTATAATCCAGATAGCCAAAAACTGGTCACCGTAGGTCTGAGTTCAGCAATTGTCCAGAATATGAAATGGGTCTTAGAGGCAGGAGGGTGGGTTACTGGGGACGAAAGGGACGCAAGGGTGCAGAAAGTAGAAGAGACTACAAGCAGGTGGAGGAAGTTTGGCTGTTATGTTCTGGTGGAGAGTTTCTACTTGAGAAGAATGGATGGAAGCTTGGTATTGAGACGTGATTTTAGGCACACAAATAACATTCGATGTAAGTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

388

Amino Acids

45.26

Weight (kDa)

9.48

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	24 - 122	1.2e-42	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AarI	CACCTGC	1 cut(s)	1035
Acc36I	ACCTGC	1 cut(s)	1035
AccB1I	GGYRCC	1 cut(s)	441
AccB7I	CCANNNNNTGG	2 cut(s)	240, 922
AciI	CCGC	2 cut(s)	464, 526
AclI	AACGTT	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	497, 719
AcuI	CTGAAG	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	4 cut(s)	29, 542, 659, 877
AfiI	CCNNNNNNNGG	4 cut(s)	30, 80, 240, 922
AgsI	TTSAA	3 cut(s)	403, 607, 895
AjiI	CACGTC	1 cut(s)	1124
AjuI	GAANNNNNNNTTGG	4 cut(s)	34, 66, 227, 259
AluBI	AGCT	5 cut(s)	476, 531, 635, 851, 1110
AluI	AGCT	5 cut(s)	476, 531, 635, 851, 1110
Alw26I	GTCTC	4 cut(s)	363, 691, 1028, 1114
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	2 cut(s)	497, 719
AspS9I	GGNCC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	184, 919
AvaI	CYCGRG	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	441
BbsI	GAAGAC	2 cut(s)	313, 719
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	5 cut(s)	476, 510, 540, 623, 1097
BceAI	ACGGC	1 cut(s)	827
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	4 cut(s)	363, 691, 1028, 1114
BfaI	CTAG	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	1035
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	737
BmgBI	CACGTC	1 cut(s)	1124
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	2 cut(s)	888, 1005
BmsI	GCATC	3 cut(s)	58, 550, 565
BmuI	ACTGGG	2 cut(s)	888, 1005
BpiI	GAAGAC	2 cut(s)	313, 719
BpuEI	CTTGAG	2 cut(s)	517, 1111
BpuMI	CCSGG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	700
BsaJI	CCNNGG	3 cut(s)	445, 564, 843
BsaWI	WCCGGW	2 cut(s)	30, 80
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 80, 240, 922
Bse1I	ACTGG	3 cut(s)	883, 927, 1000
Bse3DI	GCAATG	1 cut(s)	796
BseDI	CCNNGG	3 cut(s)	445, 564, 843
BseGI	GGATG	4 cut(s)	246, 521, 811, 1108
BseLI	CCNNNNNNNGG	4 cut(s)	30, 80, 240, 922
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	2 cut(s)	421, 929
BseNI	ACTGG	3 cut(s)	883, 927, 1000
BseXI	GCAGC	1 cut(s)	540
BsgI	GTGCAG	1 cut(s)	1040
BshFI	GGCC	1 cut(s)	570
BshNI	GGYRCC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	3 cut(s)	31, 81, 251
BslFI	GGGAC	4 cut(s)	359, 395, 1013, 1022
BslI	CCNNNNNNNGG	4 cut(s)	30, 80, 240, 922
BsmAI	GTCTC	4 cut(s)	363, 691, 1028, 1114
BsmBI	CGTCTC	2 cut(s)	691, 1114
BsmFI	GGGAC	4 cut(s)	359, 395, 1013, 1022
BsnI	GGCC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	737
Bsp143I	GATC	2 cut(s)	259, 587
BspACI	CCGC	2 cut(s)	464, 526
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	420, 930
BspLI	GGNNCC	1 cut(s)	443
BspMI	ACCTGC	1 cut(s)	1035
BspT107I	GGYRCC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	3 cut(s)	883, 927, 1000
BssECI	CCNNGG	3 cut(s)	445, 564, 843
BssMI	GATC	2 cut(s)	259, 587
BssNI	GRCGYC	1 cut(s)	700
BssT1I	CCWWGG	2 cut(s)	445, 564
Bst4CI	ACNGT	3 cut(s)	196, 662, 931
Bst6I	CTCTTC	2 cut(s)	747, 1026
BstACI	GRCGYC	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	146, 325, 815
BstDEI	CTNAG	4 cut(s)	407, 503, 938, 973
BstDSI	CCRYGG	1 cut(s)	843
BstEII	GGTNACC	1 cut(s)	925
BstF5I	GGATG	4 cut(s)	246, 521, 811, 1108
BstKTI	GATC	2 cut(s)	262, 590
BstMAI	GTCTC	4 cut(s)	363, 691, 1028, 1114
BstMBI	GATC	2 cut(s)	259, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	786, 848
BstNSI	RCATGY	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	540
BstV2I	GAAGAC	2 cut(s)	313, 719
BstXI	CCANNNNNNTGG	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	1124
BtsCI	GGATG	4 cut(s)	246, 521, 811, 1108
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	1 cut(s)	749
BveI	ACCTGC	1 cut(s)	1035
Cac8I	GCNNGC	3 cut(s)	146, 325, 815
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	2 cut(s)	708, 1019
Csp6I	GTAC	4 cut(s)	28, 541, 658, 876
CviAII	CATG	4 cut(s)	25, 126, 324, 694
CviQI	GTAC	4 cut(s)	28, 541, 658, 876
DdeI	CTNAG	4 cut(s)	407, 503, 938, 973
DpnI	GATC	2 cut(s)	261, 589
DpnII	GATC	2 cut(s)	259, 587
Eam1104I	CTCTTC	2 cut(s)	747, 1026
EarI	CTCTTC	2 cut(s)	747, 1026
Eco130I	CCWWGG	2 cut(s)	445, 564
Eco57I	CTGAAG	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	737
Eco91I	GGTNACC	1 cut(s)	925
EcoO65I	GGTNACC	1 cut(s)	925
EcoT14I	CCWWGG	2 cut(s)	445, 564
ErhI	CCWWGG	2 cut(s)	445, 564
Esp3I	CGTCTC	2 cut(s)	691, 1114
FaeI	CATG	4 cut(s)	28, 129, 327, 697
FaqI	GGGAC	4 cut(s)	359, 395, 1013, 1022
FatI	CATG	4 cut(s)	24, 125, 323, 693
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	4 cut(s)	233, 528, 818, 1115
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	1 cut(s)	777
GluI	GCNGC	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	3 cut(s)	31, 81, 251
HgaI	GACGC	2 cut(s)	708, 1019
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	4 cut(s)	28, 129, 327, 697
HindIII	AAGCTT	1 cut(s)	1108
HinfI	GANTC	4 cut(s)	122, 403, 433, 467
HpaII	CCGG	3 cut(s)	31, 81, 251
HphI	GGTGA	2 cut(s)	184, 919
Hpy188I	TCNGA	5 cut(s)	211, 368, 410, 587, 939
Hpy188III	TCNNGA	6 cut(s)	257, 376, 479, 737, 908, 955
HpyAV	CCTTC	2 cut(s)	501, 779
HpyCH4III	ACNGT	3 cut(s)	196, 662, 931
HpyCH4IV	ACGT	3 cut(s)	592, 628, 1123
HpyCH4V	TGCA	4 cut(s)	144, 327, 817, 1021
HpyF10VI	GCNNNNNNNGC	2 cut(s)	786, 848
HpyF3I	CTNAG	4 cut(s)	407, 503, 938, 973
HpySE526I	ACGT	3 cut(s)	592, 628, 1123
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	4 cut(s)	28, 129, 327, 697
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 587
LmnI	GCTCC	2 cut(s)	76, 481
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	3 cut(s)	58, 550, 565
MaeI	CTAG	1 cut(s)	777
MaeII	ACGT	3 cut(s)	592, 628, 1123
MaeIII	GTNAC	5 cut(s)	7, 94, 149, 925, 991
MalI	GATC	2 cut(s)	261, 589
MboI	GATC	2 cut(s)	259, 587
MboII	GAAGA	8 cut(s)	116, 264, 318, 721, 724, 764, 1043, 1107
MfeI	CAATTG	1 cut(s)	948
MluCI	AATT	6 cut(s)	277, 355, 497, 551, 719, 948
MlyI	GAGTC	2 cut(s)	116, 476
MseI	TTAA	5 cut(s)	159, 429, 554, 621, 639
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	3 cut(s)	31, 81, 251
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	948
MwoI	GCNNNNNNNGC	2 cut(s)	786, 848
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	2 cut(s)	259, 587
NlaIII	CATG	4 cut(s)	28, 129, 327, 697
NlaIV	GGNNCC	1 cut(s)	443
NmuCI	GTSAC	3 cut(s)	7, 149, 925
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	737
PaqCI	CACCTGC	1 cut(s)	1035
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	403, 433
PflMI	CCANNNNNTGG	2 cut(s)	240, 922
PkrI	GCNGC	1 cut(s)	530
PleI	GAGTC	2 cut(s)	116, 475
PpsI	GAGTC	2 cut(s)	116, 475
PsiI	TTATAA	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	628
PspEI	GGTNACC	1 cut(s)	925
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	1 cut(s)	568
RsaI	GTAC	4 cut(s)	29, 542, 659, 877
RsaNI	GTAC	4 cut(s)	28, 541, 658, 876
RseI	CAYNNNNRTG	1 cut(s)	328
SaqAI	TTAA	5 cut(s)	159, 429, 554, 621, 639
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	2 cut(s)	259, 587
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	2 cut(s)	116, 476
ScrFI	CCNGG	1 cut(s)	251
SfaNI	GCATC	3 cut(s)	58, 550, 565
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	737
SlaI	CTCGAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	3 cut(s)	532, 737, 1090
SmoI	CTYRAG	3 cut(s)	532, 737, 1090
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	6 cut(s)	277, 355, 497, 551, 719, 948
SsiI	CCGC	2 cut(s)	464, 526
SspMI	CTAG	1 cut(s)	777
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	445, 564
TaaI	ACNGT	3 cut(s)	196, 662, 931
TaiI	ACGT	3 cut(s)	595, 631, 1126
TaqI	TCGA	3 cut(s)	573, 738, 1150
TasI	AATT	6 cut(s)	277, 355, 497, 551, 719, 948
TfiI	GAWTC	2 cut(s)	403, 433
Tru1I	TTAA	5 cut(s)	159, 429, 554, 621, 639
Tru9I	TTAA	5 cut(s)	159, 429, 554, 621, 639
TscAI	CASTG	1 cut(s)	749
TseFI	GTSAC	3 cut(s)	7, 149, 925
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	3 cut(s)	7, 149, 925
TspDTI	ATGAA	6 cut(s)	117, 235, 368, 425, 722, 977
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	749
Van91I	CCANNNNNTGG	2 cut(s)	240, 922
XapI	RAATTY	2 cut(s)	497, 719
XceI	RCATGY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	737
XspI	CTAG	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.