FvH4_4g28540

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001480
Physical Location & Seq
Reverse (-)
29146650 .. 29146931
282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28540.t1

Sequence Viewer

Length: 282 bp
ATGTGGTTTAAGAGCTCTGATGGTGTGGGAGGAGAAAGGAGTGTAGGATTGAGTATGAAAATTGTTGAGAGAATGAAATGGGAGCAGGAAAGAGTTGGATGGGTTAGTGGGGATGAAAGACAAGTTAGGGTTGAAAGAGTAGAAGAGTTTGGAGGGACTGGAGAGTGGAAGAAATTTGCTTGTTATGTGTTGGTAGAGAGTTTTGTGTTGAAGAGACTGCATGATAGGTCAGCAGTACTTTTGGCATATGATTTCAAGCACACTCACAGCAAACGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

94

Amino Acids

10.91

Weight (kDa)

8.82

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 3 cut(s) 134, 211, 256
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
BanII GRGCYC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 17
BccI CCATC 2 cut(s) 14, 93
BcoDI GTCTC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 104, 118
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 17
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 163
Bst6I CTCTTC 2 cut(s) 138, 206
BstF5I GGATG 2 cut(s) 104, 118
BstMAI GTCTC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 104, 118
Csp6I GTAC 1 cut(s) 236
CviAII CATG 1 cut(s) 221
CviJI RGCY 1 cut(s) 15
CviKI_1 RGCY 1 cut(s) 15
CviQI GTAC 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 138, 206
EarI CTCTTC 2 cut(s) 138, 206
Ecl136II GAGCTC 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 1 cut(s) 224
FaiI YATR 5 cut(s) 56, 186, 222, 247, 249
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 220
FauNDI CATATG 1 cut(s) 247
FokI GGATG 2 cut(s) 111, 125
FriOI GRGCYC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 180
Hin1II CATG 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 220
Hsp92II CATG 1 cut(s) 224
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 71, 144
MboII GAAGA 3 cut(s) 155, 181, 223
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 60, 173
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 23, 146
MseI TTAA 1 cut(s) 9
NdeI CATATG 1 cut(s) 247
NlaIII CATG 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 9
ScaI AGTACT 1 cut(s) 237
SduI GDGCHC 1 cut(s) 17
SetI ASST 2 cut(s) 17, 230
SgeI CNNG 6 cut(s) 98, 134, 171, 192, 233, 268
Sse9I AATT 2 cut(s) 60, 173
SstI GAGCTC 1 cut(s) 17
TasI AATT 2 cut(s) 60, 173
TatI WGTACW 1 cut(s) 235
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 3 cut(s) 71, 89, 129
XapI RAATTY 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.