Rh4DG351700

Protein of unknown function (DUF1262)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
57330570 .. 57330941
372 bp
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UTR
Exon/CDS
Intron
Rh4DG351700.1

Sequence Viewer

Length: 372 bp
ATGAGACTTGAGCAAAGGTGGGAGAGAATTTTCAGCTCTGACGATGAAGGAGCAAGTGTGGTGTGTTCGTGGATACCTTTATTCCAAGAGAAGTTGCTTTTGTTGGTGGAAATGAAGCTGTTTGGTGAAGATAAAGAAAGAAATGTGAGTGAAGGGTTCTTGTGGTTTAAGAGCTCGGATGGTGTGGAAGGAGAAAAAAGTGTGGGTTTGAGCGTGAAAATTGTTGAGAGGATGAAATGGGAGCAAGAAAGAGTTGGATGGGTTGGTAGGGATGAAAGACAAGTCAGGGTTGAAAGAGTGGAAGAGTTTGGAGGGAGTGGAGAGTGGAAGAAATTCGCTGCTAGAAAACCTGATGAACAAGACATTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.44

Weight (kDa)

4.99

Isoelectric Point (pI)

25.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 27, 332
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 3 cut(s) 36, 118, 174
AluI AGCT 3 cut(s) 36, 118, 174
Alw21I GWGCWC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 27, 332
Asp700I GAANNNNTTC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 173, 252
BciVI GTATCC 1 cut(s) 66
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 66
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
BseGI GGATG 4 cut(s) 184, 237, 263, 277
BseXI GCAGC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 297
BstF5I GGATG 4 cut(s) 184, 237, 263, 277
BstV1I GCAGC 1 cut(s) 325
BsuI GTATCC 1 cut(s) 66
BtsCI GGATG 4 cut(s) 184, 237, 263, 277
CviJI RGCY 3 cut(s) 36, 118, 174
CviKI_1 RGCY 3 cut(s) 36, 118, 174
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 176
FaiI YATR 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 4 cut(s) 191, 244, 270, 284
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 339
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 40, 178
HpyAV CCTTC 3 cut(s) 41, 146, 182
LmnI GCTCC 2 cut(s) 50, 241
LpnPI CCDG 2 cut(s) 271, 363
Lsp1109I GCAGC 1 cut(s) 325
MaeI CTAG 1 cut(s) 342
MboII GAAGA 3 cut(s) 140, 314, 340
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 3 cut(s) 27, 219, 332
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 222, 305
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 176
SacI GAGCTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 339
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 20, 38, 79, 120, 176, 352
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 27, 219, 332
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 176
TasI AATT 3 cut(s) 27, 219, 332
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 5 cut(s) 60, 128, 248, 288, 369
XapI RAATTY 2 cut(s) 27, 332
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.