Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

29150697 .. 29152375

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28543.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTATGTAACAAGGCCTCTGTCTATGTATAGAAGGTCACCTGAATCACTATCTGTACCAACGCCGGAAGGGCCAAATTCCGGTTATCTTGTACTCCATGATGAAGAATCGGTTGAGATTACATGTTGCGGTTGCGAAGATACTGAGGTGAAAGACTTGCCTTTCCCTCAGAACAAGGATCTCACAGTTCATTATTCCTCAGATACTGATGATGTTGCCTTCATTCCAGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGATAAATCGCCGGCATGGGAAACGCAGAGGGGAAGTGTACACAAATTCAAAGGAAGAAGAAATGGTGGATTGCTGTTTTGGTAAATCTCCTCAAGATGCAAAACCAAAACCACTGGATCCATCAGACATTTACCAACAAATTGAGATAATTCCAAGGAGACACCGCGGTTACTACACTGCCAAGGCTGTTGTTTCAGATGGCTTTCCTCCTTCTTTTTTGAGGAGAAAGGATTGGAGAGTGACTATGGACACACCCCGTCATTACCAACTAGGTGAAGCTCCCGGACTCGACTCTTCCAAGCGATCAGGCTTTCCGAGCTTCGACTTTCCATTGTCCAAAGATTGTTCTGATGCTATGTTAGTTGGGAAGTGGCACTGTCCTTTCTTGTTCATCAAGGAAGGGGGACTGAAGTTGAAGCACCAAATGAAGCAATGCATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAGTACAATGAGGGAACAAGCAGCAATGCTAATGCTGTGTTTGTGGATACATTTGTTCAAAGAGAGGCGGTTTTTATTGCTGGAAATGAAGCGTTTTCGGATAATCTTGACAGATTTAATGTTGCCGATGATGGTTTCATGTGGTTTAAGAGCTCTGATGGGGCGGGAGGAGAAAGGAGCGTAGGGTTGAGCATGAAAATTGTGGAGAGAATGAAATGGGAGCAGGAAAGAGTTGGATGGGTTGGTGCGGAGAAGAGGAAAGTGCGAGTGGAGAGAAGTGAGACGTATGGAGGAATTGGTAGTTGGAACAGATTTGCTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGAGAAATGATGGAAGCTTAGCACTACTGACATATGATTTCAAGCACACTCACCAGATTAGGTGCAAATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

392

Amino Acids

45.11

Weight (kDa)

6.81

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	23 - 115	3.2e-32	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	432
AciI	CCGC	6 cut(s)	129, 430, 432, 818, 914, 998
AclWI	GGATC	3 cut(s)	186, 377, 390
AcsI	RAATTY	3 cut(s)	76, 310, 741
AcuI	CTGAAG	1 cut(s)	695
AfaI	GTAC	4 cut(s)	57, 93, 305, 755
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	315, 682, 809, 1099, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	1036, 1068
AluBI	AGCT	4 cut(s)	545, 585, 903, 1116
AluI	AGCT	4 cut(s)	545, 585, 903, 1116
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	3 cut(s)	418, 712, 1025
AlwI	GGATC	3 cut(s)	186, 377, 390
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	14, 71
ApeKI	GCWGC	1 cut(s)	771
ApoI	RAATTY	3 cut(s)	76, 310, 741
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	4 cut(s)	30, 160, 551, 1142
BaeI	ACNNNNGTAYC	4 cut(s)	132, 165, 789, 822
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	905
Bbv12I	GWGCWC	1 cut(s)	905
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	7 cut(s)	394, 458, 726, 875, 902, 981, 1103
BciVI	GTATCC	1 cut(s)	790
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	418, 712, 1025
BfaI	CTAG	1 cut(s)	536
BfuI	GTATCC	1 cut(s)	790
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	772
BlpI	GCTNAGC	1 cut(s)	1117
BlsI	GCNGC	1 cut(s)	773
Bme1390I	CCNGG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	352, 607
BpmI	CTGGAG	1 cut(s)	743
Bpu1102I	GCTNAGC	1 cut(s)	1117
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	3 cut(s)	419, 430, 447
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	3 cut(s)	227, 384, 726
Bse3DI	GCAATG	2 cut(s)	704, 781
BseDI	CCNNGG	3 cut(s)	419, 430, 447
BseGI	GGATG	1 cut(s)	992
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	704, 781
BseMII	CTCAG	3 cut(s)	135, 182, 213
BseNI	ACTGG	3 cut(s)	227, 384, 726
BseRI	GAGGAG	3 cut(s)	345, 502, 933
BseXI	GCAGC	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	16, 73
BsiHKAI	GWGCWC	1 cut(s)	905
BsiSI	CCGG	4 cut(s)	65, 81, 277, 549
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	418, 712, 1025
BsmBI	CGTCTC	1 cut(s)	1025
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	16, 73
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	178, 382, 569
Bsp1720I	GCTNAGC	1 cut(s)	1117
BspACI	CCGC	6 cut(s)	129, 430, 432, 818, 914, 998
BspANI	GGCC	2 cut(s)	16, 73
BspCNI	CTCAG	3 cut(s)	136, 181, 212
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	186, 377, 390
BsrDI	GCAATG	2 cut(s)	704, 781
BsrFI	RCCGGY	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	227, 384, 726
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	419, 430, 447
BssMI	GATC	3 cut(s)	178, 382, 569
BssT1I	CCWWGG	2 cut(s)	419, 447
Bst4CI	ACNGT	2 cut(s)	187, 644
Bst6I	CTCTTC	3 cut(s)	565, 998, 1094
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	4 cut(s)	144, 168, 199, 1117
BstDSI	CCRYGG	1 cut(s)	430
BstEII	GGTNACC	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	992
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	181, 385, 572
BstMAI	GTCTC	3 cut(s)	418, 712, 1025
BstMBI	GATC	3 cut(s)	178, 382, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 582
BstNSI	RCATGY	2 cut(s)	126, 706
BstPI	GGTNACC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	547
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	783
BstX2I	RGATCY	2 cut(s)	178, 382
BstYI	RGATCY	2 cut(s)	178, 382
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	2 cut(s)	16, 73
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	992
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	377, 441, 640
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	71
Cfr42I	CCGCGG	1 cut(s)	433
Csp6I	GTAC	4 cut(s)	56, 92, 304, 754
CviAII	CATG	7 cut(s)	98, 123, 263, 281, 703, 889, 943
CviQI	GTAC	4 cut(s)	56, 92, 304, 754
DdeI	CTNAG	4 cut(s)	144, 168, 199, 1117
DpnI	GATC	3 cut(s)	180, 384, 571
DpnII	GATC	3 cut(s)	178, 382, 569
Eam1104I	CTCTTC	3 cut(s)	565, 998, 1094
EarI	CTCTTC	3 cut(s)	565, 998, 1094
Ecl136II	GAGCTC	1 cut(s)	903
Eco130I	CCWWGG	2 cut(s)	419, 447
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	905
Eco53kI	GAGCTC	1 cut(s)	903
Eco57I	CTGAAG	1 cut(s)	695
Eco91I	GGTNACC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	903
EcoO65I	GGTNACC	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	419, 447
EcoT22I	ATGCAT	1 cut(s)	704
EcoT38I	GRGCYC	1 cut(s)	905
ErhI	CCWWGG	2 cut(s)	419, 447
Esp3I	CGTCTC	1 cut(s)	1025
FaeI	CATG	7 cut(s)	101, 126, 266, 284, 706, 892, 946
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	7 cut(s)	97, 122, 262, 280, 702, 888, 942
FauI	CCCGC	1 cut(s)	907
FauNDI	CATATG	1 cut(s)	1132
Fnu4HI	GCNGC	1 cut(s)	772
FokI	GGATG	1 cut(s)	999
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	1 cut(s)	772
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	1 cut(s)	772
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	16, 73
HapII	CCGG	4 cut(s)	65, 81, 277, 549
Hin1II	CATG	7 cut(s)	101, 126, 266, 284, 706, 892, 946
HindIII	AAGCTT	1 cut(s)	1114
HinfI	GANTC	4 cut(s)	44, 107, 552, 557
HpaII	CCGG	4 cut(s)	65, 81, 277, 549
HphI	GGTGA	4 cut(s)	30, 160, 551, 1142
Hpy166II	GTNNAC	2 cut(s)	304, 306
Hpy188I	TCNGA	8 cut(s)	171, 202, 391, 463, 582, 616, 850, 907
Hpy188III	TCNNGA	3 cut(s)	233, 359, 857
Hpy8I	GTNNAC	2 cut(s)	304, 306
HpyAV	CCTTC	5 cut(s)	27, 62, 229, 486, 659
HpyCH4III	ACNGT	2 cut(s)	187, 644
HpyCH4IV	ACGT	1 cut(s)	1034
HpyCH4V	TGCA	3 cut(s)	365, 702, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 582
HpyF3I	CTNAG	4 cut(s)	144, 168, 199, 1117
HpySE526I	ACGT	1 cut(s)	1034
Hsp92II	CATG	7 cut(s)	101, 126, 266, 284, 706, 892, 946
KroI	GCCGGC	1 cut(s)	276
KroNI	GCCGGC	1 cut(s)	278
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	178, 382, 569
LmnI	GCTCC	4 cut(s)	550, 724, 927, 970
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	2 cut(s)	352, 607
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	1034
MaeIII	GTNAC	4 cut(s)	7, 36, 434, 505
MalI	GATC	3 cut(s)	180, 384, 571
MboI	GATC	3 cut(s)	178, 382, 569
MboII	GAAGA	7 cut(s)	116, 149, 332, 335, 552, 1015, 1111
MflI	RGATCY	2 cut(s)	178, 382
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	7 cut(s)	76, 310, 405, 414, 741, 948, 1044
MlyI	GAGTC	2 cut(s)	546, 551
MmeI	TCCRAC	2 cut(s)	964, 1034
Mph1103I	ATGCAT	1 cut(s)	704
MroNI	GCCGGC	1 cut(s)	276
MseI	TTAA	2 cut(s)	867, 897
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	4 cut(s)	65, 81, 277, 549
MspR9I	CCNGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	70, 582
NaeI	GCCGGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	3 cut(s)	178, 382, 569
NgoMIV	GCCGGC	1 cut(s)	276
NlaIII	CATG	7 cut(s)	101, 126, 266, 284, 706, 892, 946
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	36, 505
NsiI	ATGCAT	1 cut(s)	704
NspI	RCATGY	2 cut(s)	126, 706
PceI	AGGCCT	1 cut(s)	16
PciI	ACATGT	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	44, 107
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	773
PleI	GAGTC	2 cut(s)	546, 551
PpsI	GAGTC	2 cut(s)	546, 551
PscI	ACATGT	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	905
PspEI	GGTNACC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	178, 382
RsaI	GTAC	4 cut(s)	57, 93, 305, 755
RsaNI	GTAC	4 cut(s)	56, 92, 304, 754
SacI	GAGCTC	1 cut(s)	905
SacII	CCGCGG	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	867, 897
SatI	GCNGC	1 cut(s)	772
Sau3AI	GATC	3 cut(s)	178, 382, 569
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	2 cut(s)	546, 551
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	352, 607
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	7 cut(s)	76, 310, 405, 414, 741, 948, 1044
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	6 cut(s)	129, 430, 432, 818, 914, 998
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	905
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	419, 447
TaaI	ACNGT	2 cut(s)	187, 644
TaiI	ACGT	1 cut(s)	1037
TaqI	TCGA	3 cut(s)	555, 588, 747
TasI	AATT	7 cut(s)	76, 310, 405, 414, 741, 948, 1044
TatI	WGTACW	3 cut(s)	91, 303, 753
TfiI	GAWTC	2 cut(s)	44, 107
Tru1I	TTAA	2 cut(s)	867, 897
Tru9I	TTAA	2 cut(s)	867, 897
TscAI	CASTG	3 cut(s)	384, 448, 647
TseFI	GTSAC	2 cut(s)	36, 505
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	2 cut(s)	36, 505
TspRI	CASTG	3 cut(s)	384, 448, 647
XapI	RAATTY	3 cut(s)	76, 310, 741
XceI	RCATGY	2 cut(s)	126, 706
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.