Rh4DG351900

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001480
Physical Location & Seq
Reverse (-)
57337032 .. 57337697
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG351900.1

Sequence Viewer

Length: 666 bp
ATGACATTTTCCCATTACCAACTAGGTGCAGCTCCAGGACTCAACGCTTCGAAGCGATCGGGCCTTCCTGGTTTCGACTTTCCATTGTCCAAAGATTGTTCTGAGGCTATGATAGTTGGCAAGTACTGGTACTGTCCTTTCTTGTATATCAAGGAAGGGGGGTTGAAGTTAAAGCAGCAAATGAAGCAATGCATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTTGACAAGTACAATGAAGGTAAGAGCAATAATGCTAATGCTGTGTTTGTGGATGCTTTTGTCCAAAGAGAGGCAGTTTTTGTTGCTGGAAGTGAAGCTATTTGGGATAATCATGAGAGAGTTGATAACGTTGGTGACGGTTTCATGTGGTTTAAGAGCTCTGATGGTGTGGGAGGAGAAAGGAGTGTAGGATTGAGCATGAAAATTGTTGAAAGAATGAAATGGGAGCAAGAAAGTGTTGGATGGCTTGCTGGGGATGAAAGAAAAGTAAGAGTGGAGAGAGTAGAAGAGTTTGGAGGCATAGGTAGTTGGAGTAAATTTGCTTGTTATATGTTGGTAGAGAGATTTGTATTGAAAAGAAGGGATGGAAGCTTAGCATTATTGACATGTGATTTCAAGCACACTCACCAGATTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

221

Amino Acids

25.55

Weight (kDa)

8.21

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 363
AcsI RAATTY 2 cut(s) 231, 551
AfaI GTAC 3 cut(s) 125, 131, 245
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 4 cut(s) 166, 446, 589, 631
AjnI CCWGG 2 cut(s) 34, 67
AluBI AGCT 4 cut(s) 32, 332, 393, 606
AluI AGCT 4 cut(s) 32, 332, 393, 606
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 29, 175
ApoI RAATTY 2 cut(s) 231, 551
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 380, 632
AsuII TTCGAA 1 cut(s) 50
BanII GRGCYC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 41, 187
BccI CCATC 4 cut(s) 216, 392, 471, 593
BciT130I CCWGG 2 cut(s) 36, 69
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 30, 176
BlpI GCTNAGC 1 cut(s) 607
BlsI GCNGC 2 cut(s) 31, 177
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 36, 69
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 36, 69
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 2 cut(s) 18, 233
Bpu1102I GCTNAGC 1 cut(s) 607
Bpu14I TTCGAA 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 131, 216
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 36, 69
BseGI GGATG 4 cut(s) 292, 482, 496, 604
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 131, 216
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 41, 187
BseYI CCCAGC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 1 cut(s) 56
Bsp1720I GCTNAGC 1 cut(s) 607
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 346
BspT104I TTCGAA 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 131, 216
BssMI GATC 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 36, 69
Bst4CI ACNGT 2 cut(s) 134, 374
Bst6I CTCTTC 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 102, 607
BstF5I GGATG 4 cut(s) 292, 482, 496, 604
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 56
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 2 cut(s) 36, 69
BstNSI RCATGY 2 cut(s) 196, 624
BstSCI CCNGG 2 cut(s) 34, 67
BstV1I GCAGC 2 cut(s) 41, 187
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 4 cut(s) 292, 482, 496, 604
Cac8I GCNNGC 1 cut(s) 483
CciI TCATGA 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 3 cut(s) 124, 130, 244
CviAII CATG 5 cut(s) 193, 347, 379, 433, 621
CviJI RGCY 7 cut(s) 32, 63, 107, 332, 393, 481, 606
CviKI_1 RGCY 7 cut(s) 32, 63, 107, 332, 393, 481, 606
CviQI GTAC 3 cut(s) 124, 130, 244
DdeI CTNAG 2 cut(s) 102, 607
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 34, 67
EcoT22I ATGCAT 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 5 cut(s) 196, 350, 382, 436, 624
FatI CATG 5 cut(s) 192, 346, 378, 432, 620
Fnu4HI GCNGC 2 cut(s) 30, 176
FokI GGATG 4 cut(s) 299, 489, 503, 611
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 2 cut(s) 30, 176
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 30, 176
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 2 cut(s) 18, 233
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 5 cut(s) 196, 350, 382, 436, 624
HindIII AAGCTT 1 cut(s) 604
HinfI GANTC 1 cut(s) 39
HphI GGTGA 2 cut(s) 380, 632
Hpy188I TCNGA 2 cut(s) 103, 397
Hpy188III TCNNGA 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 74, 149, 245, 588
HpyCH4III ACNGT 2 cut(s) 134, 374
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 29, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 102, 607
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 5 cut(s) 196, 350, 382, 436, 624
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 4 cut(s) 37, 214, 460, 651
LpnPI CCDG 9 cut(s) 21, 48, 54, 81, 112, 197, 306, 471, 656
Lsp1109I GCAGC 2 cut(s) 41, 187
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 3 cut(s) 231, 438, 551
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 454, 524
MnlI CCTC 4 cut(s) 97, 298, 401, 524
Mph1103I ATGCAT 1 cut(s) 194
MseI TTAA 2 cut(s) 170, 387
MspR9I CCNGG 2 cut(s) 36, 69
MvaI CCWGG 2 cut(s) 36, 69
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 1 cut(s) 56
NlaIII CATG 5 cut(s) 196, 350, 382, 436, 624
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 194
NspI RCATGY 2 cut(s) 196, 624
NspV TTCGAA 1 cut(s) 50
PagI TCATGA 1 cut(s) 346
PciI ACATGT 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 2 cut(s) 31, 177
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PscI ACATGT 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 34, 67
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 2 cut(s) 34, 67
PspPI GGNCC 1 cut(s) 61
PvuI CGATCG 1 cut(s) 59
RsaI GTAC 3 cut(s) 125, 131, 245
RsaNI GTAC 3 cut(s) 124, 130, 244
SacI GAGCTC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 170, 387
SatI GCNGC 2 cut(s) 30, 176
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 61
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 36, 69
SduI GDGCHC 1 cut(s) 395
SetI ASST 8 cut(s) 28, 34, 256, 334, 366, 395, 541, 608
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 50
Sse9I AATT 3 cut(s) 231, 438, 551
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 34, 67
TaaI ACNGT 2 cut(s) 134, 374
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 50, 75
TasI AATT 3 cut(s) 231, 438, 551
TatI WGTACW 2 cut(s) 123, 243
Tru1I TTAA 2 cut(s) 170, 387
Tru9I TTAA 2 cut(s) 170, 387
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 29, 175
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 7 cut(s) 197, 216, 264, 367, 449, 467, 507
XapI RAATTY 2 cut(s) 231, 551
XceI RCATGY 2 cut(s) 196, 624
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.