Rh4CG372400

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001480
Physical Location & Seq
Reverse (-)
62716975 .. 62719267
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG372400.1

Sequence Viewer

Length: 1365 bp
ATGCATGAAAATTATGAACCGCAGAGTTTGAATGAGTTCATGAATTCTATCACAAGGAAATTCTATAAATTGGTACTATATGAATCAAGTAAATCATCAAGCCAATTTAAAGTGAGTACTCTCCCCTTTCTGTCCATCTTCTTCCTCAATCTTCTGCCAAAACAAGACTACCTCAGCAGAAAAACAGTCAACATGTATGTAACAAGGCCTCTGTCTATGTATAGAAGGTCTCCCGATTCACTATCACTACCAACGCCGGAAGGTCCAAATTCCGGTTATCTTGTACTACACGATGAAGAATCAGATGAGACTACCTGTTTCGGATGTTGCAAAGATCCTCAGGTGCAAGGCTTGCCTTTCCCTCAGAACAAGAATCTCACAGTTGAATATTCCTCAGATGATGATGATGTTGCCTTCATTCCAGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGATACGCCGGAATGGGAGACACAGAGGGAAAGTGTACACAAATTCAAAGGAAGAGGACATGGCAGATTGCTGTTTTGGCAAAGCTGTTCAAGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAGGAAGCACCGCGGCTACTTTACTGCCAAGGCTGTTGCTTCAGATGGGTTTCCTCCTTCCTTTTTGAGGAGAAAAGATTGGACAGTGACCATGAACACACCCCATCATTATCAACTAGGTGAAGCTCCAGGACTCAACGCTTCGAAGCGATCAGGCCTTCCTGGTTTCGACTTTCCACTGTCCAAAGATTGTTCTGAGGCTATGGTAGTTGGCAAGTGGCACTGTCCTTTCTTGTTTATCAAGGAAGGGGGACTGGAGTTGAAGCACCAAATGAAGCAGTACATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAATACAATGAAGGAAAGAGCAACAATGCTAATGCTGTGTTTGTGGATGCATTTGTTCAAAGAGAGGCGGTATTTATTGCTGGAAGAGAAGCTTATTCCGATAATCTAGACAGAGTTCATATCGTCGATGATTTCATGTGGTTTAAGAGCTCTGATGGTGGGGGAGGAGAAAGGAGTGTAGGGTTGAGCATGAAAATTATTGAGAGAATGAAGTGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGAGAAAAGAAAAGTGCGAGTGGAGAAAACCGAAAAGTTTGGGGGAACTGATGGTTGGAATAGATTTTCTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGAGAATGGATGAAAGCTTAGCACTATTGGCATATGATTTCAGGCACACTCACCAGATTAGGTGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

454

Amino Acids

52.63

Weight (kDa)

8.22

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 87 - 179 1.6e-37 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 624
AciI CCGC 4 cut(s) 20, 622, 624, 1010
AclWI GGATC 3 cut(s) 329, 569, 582
AcsI RAATTY 5 cut(s) 43, 59, 268, 502, 933
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 5 cut(s) 75, 118, 285, 497, 893
AfiI CCNNNNNNNGG 2 cut(s) 272, 678
AflIII ACRYGT 2 cut(s) 192, 894
AgsI TTSAA 7 cut(s) 31, 386, 507, 551, 874, 1001, 1288
AjnI CCWGG 2 cut(s) 739, 772
AjuI GAANNNNNNNTTGG 2 cut(s) 1225, 1257
AluBI AGCT 5 cut(s) 545, 737, 1034, 1092, 1305
AluI AGCT 5 cut(s) 545, 737, 1034, 1092, 1305
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 4 cut(s) 234, 302, 472, 904
AlwI GGATC 3 cut(s) 329, 569, 582
AoxI GGCC 2 cut(s) 206, 766
ApoI RAATTY 5 cut(s) 43, 59, 268, 502, 933
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 743, 1331
AsuII TTCGAA 1 cut(s) 755
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 339
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 1094
Bbv12I GWGCWC 1 cut(s) 1094
BbvCI CCTCAGC 1 cut(s) 173
BccI CCATC 8 cut(s) 143, 586, 650, 723, 918, 1091, 1170, 1232
BciT130I CCWGG 2 cut(s) 741, 774
BcoDI GTCTC 4 cut(s) 234, 302, 472, 904
BfaI CTAG 2 cut(s) 728, 1049
BisI GCNGC 1 cut(s) 625
BlpI GCTNAGC 1 cut(s) 1306
BlsI GCNGC 1 cut(s) 626
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 741, 774
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 741, 774
BmsI GCATC 1 cut(s) 979
BpmI CTGGAG 3 cut(s) 723, 887, 935
Bpu10I CCTNAGC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 1306
Bpu14I TTCGAA 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 611, 622, 639
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 678
Bse1I ACTGG 3 cut(s) 422, 870, 918
Bse21I CCTNAGG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 741, 774
BseDI CCNNGG 3 cut(s) 611, 622, 639
BseGI GGATG 4 cut(s) 329, 994, 1181, 1303
BseLI CCNNNNNNNGG 2 cut(s) 272, 678
BseMII CTCAG 5 cut(s) 187, 353, 377, 408, 798
BseNI ACTGG 3 cut(s) 422, 870, 918
BseRI GAGGAG 2 cut(s) 694, 1122
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 2 cut(s) 208, 768
BsiHKAI GWGCWC 1 cut(s) 1094
BsiSI CCGG 3 cut(s) 257, 273, 469
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 2 cut(s) 272, 678
BsmAI GTCTC 4 cut(s) 234, 302, 472, 904
BsmFI GGGAC 1 cut(s) 876
BsnI GGCC 2 cut(s) 208, 768
Bso31I GGTCTC 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 1 cut(s) 1094
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 3 cut(s) 334, 574, 761
Bsp1720I GCTNAGC 1 cut(s) 1306
BspACI CCGC 4 cut(s) 20, 622, 624, 1010
BspANI GGCC 2 cut(s) 208, 768
BspCNI CTCAG 5 cut(s) 186, 352, 376, 407, 799
BspFNI CGCG 1 cut(s) 624
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 3 cut(s) 329, 569, 582
BspT104I TTCGAA 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 3 cut(s) 422, 870, 918
BssECI CCNNGG 3 cut(s) 611, 622, 639
BssMI GATC 3 cut(s) 334, 574, 761
BssT1I CCWWGG 2 cut(s) 611, 639
Bst2UI CCWGG 2 cut(s) 741, 774
Bst4CI ACNGT 5 cut(s) 187, 382, 697, 792, 836
Bst6I CTCTTC 3 cut(s) 507, 1021, 1283
BstAPI GCANNNNNTGC 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 755
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 6 cut(s) 173, 339, 363, 394, 807, 1306
BstDSI CCRYGG 1 cut(s) 622
BstENI CCTNNNNNAGG 1 cut(s) 676
BstF5I GGATG 4 cut(s) 329, 994, 1181, 1303
BstFNI CGCG 1 cut(s) 624
BstKTI GATC 3 cut(s) 337, 577, 764
BstMAI GTCTC 4 cut(s) 234, 302, 472, 904
BstMBI GATC 3 cut(s) 334, 574, 761
BstMWI GCNNNNNNNGC 3 cut(s) 352, 537, 1316
BstNI CCWGG 2 cut(s) 741, 774
BstNSI RCATGY 2 cut(s) 196, 898
BstSCI CCNGG 2 cut(s) 739, 772
BstUI CGCG 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 334, 574
BstYI RGATCY 2 cut(s) 334, 574
Bsu36I CCTNAGG 1 cut(s) 339
BsuRI GGCC 2 cut(s) 208, 768
BtgI CCRYGG 1 cut(s) 622
BtsCI GGATG 4 cut(s) 329, 994, 1181, 1303
BtsIMutI CAGTG 3 cut(s) 702, 788, 832
Cac8I GCNNGC 1 cut(s) 353
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 263
Cfr42I CCGCGG 1 cut(s) 625
Csp6I GTAC 5 cut(s) 74, 117, 284, 496, 892
CviAII CATG 9 cut(s) 5, 40, 193, 458, 520, 703, 895, 1078, 1132
CviQI GTAC 5 cut(s) 74, 117, 284, 496, 892
DdeI CTNAG 6 cut(s) 173, 339, 363, 394, 807, 1306
DpnI GATC 3 cut(s) 336, 576, 763
DpnII GATC 3 cut(s) 334, 574, 761
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 507, 1021, 1283
EarI CTCTTC 3 cut(s) 507, 1021, 1283
Ecl136II GAGCTC 1 cut(s) 1092
Eco130I CCWWGG 2 cut(s) 611, 639
Eco147I AGGCCT 2 cut(s) 208, 768
Eco24I GRGCYC 1 cut(s) 1094
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 1092
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 1092
EcoNI CCTNNNNNAGG 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 739, 772
EcoT14I CCWWGG 2 cut(s) 611, 639
EcoT22I ATGCAT 2 cut(s) 6, 994
EcoT38I GRGCYC 1 cut(s) 1094
ErhI CCWWGG 2 cut(s) 611, 639
FaeI CATG 9 cut(s) 8, 43, 196, 461, 523, 706, 898, 1081, 1135
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FaqI GGGAC 1 cut(s) 876
FatI CATG 9 cut(s) 4, 39, 192, 457, 519, 702, 894, 1077, 1131
FauNDI CATATG 1 cut(s) 1321
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 4 cut(s) 336, 1001, 1188, 1310
FriOI GRGCYC 1 cut(s) 1094
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 2 cut(s) 728, 1049
GluI GCNGC 1 cut(s) 625
GsuI CTGGAG 3 cut(s) 723, 887, 935
HaeIII GGCC 2 cut(s) 208, 768
HapII CCGG 3 cut(s) 257, 273, 469
Hin1II CATG 9 cut(s) 8, 43, 196, 461, 523, 706, 898, 1081, 1135
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 1032, 1303
HinfI GANTC 5 cut(s) 83, 236, 299, 373, 744
HpaII CCGG 3 cut(s) 257, 273, 469
HphI GGTGA 2 cut(s) 743, 1331
Hpy166II GTNNAC 3 cut(s) 190, 496, 498
Hpy188I TCNGA 9 cut(s) 304, 323, 366, 397, 583, 655, 808, 1042, 1096
Hpy188III TCNNGA 5 cut(s) 40, 233, 428, 551, 1049
Hpy8I GTNNAC 3 cut(s) 190, 496, 498
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 7 cut(s) 219, 254, 424, 678, 779, 851, 947
HpyCH4III ACNGT 5 cut(s) 187, 382, 697, 792, 836
HpyCH4V TGCA 5 cut(s) 4, 330, 346, 992, 1353
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 537, 1316
HpyF3I CTNAG 6 cut(s) 173, 339, 363, 394, 807, 1306
Hsp92II CATG 9 cut(s) 8, 43, 196, 461, 523, 706, 898, 1081, 1135
KspI CCGCGG 1 cut(s) 625
Kzo9I GATC 3 cut(s) 334, 574, 761
LmnI GCTCC 3 cut(s) 742, 916, 1159
LweI GCATC 1 cut(s) 979
MaeI CTAG 2 cut(s) 728, 1049
MaeIII GTNAC 2 cut(s) 199, 697
MalI GATC 3 cut(s) 336, 576, 763
MboI GATC 3 cut(s) 334, 574, 761
MboII GAAGA 7 cut(s) 130, 133, 143, 308, 524, 1038, 1300
MflI RGATCY 2 cut(s) 334, 574
MhlI GDGCHC 1 cut(s) 1094
MlyI GAGTC 1 cut(s) 738
MmeI TCCRAC 2 cut(s) 1153, 1223
Mph1103I ATGCAT 2 cut(s) 6, 994
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 108, 1086
MspA1I CMGCKG 1 cut(s) 624
MspI CCGG 3 cut(s) 257, 273, 469
MspR9I CCNGG 2 cut(s) 741, 774
MvaI CCWGG 2 cut(s) 741, 774
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 3 cut(s) 352, 537, 1316
NdeI CATATG 1 cut(s) 1321
NdeII GATC 3 cut(s) 334, 574, 761
NlaIII CATG 9 cut(s) 8, 43, 196, 461, 523, 706, 898, 1081, 1135
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 697
NsiI ATGCAT 2 cut(s) 6, 994
NspI RCATGY 2 cut(s) 196, 898
NspV TTCGAA 1 cut(s) 755
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 2 cut(s) 208, 768
PciI ACATGT 2 cut(s) 192, 894
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 4 cut(s) 83, 236, 299, 373
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 1 cut(s) 626
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PscI ACATGT 2 cut(s) 192, 894
Psp124BI GAGCTC 1 cut(s) 1094
Psp6I CCWGG 2 cut(s) 739, 772
PspGI CCWGG 2 cut(s) 739, 772
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 2 cut(s) 334, 574
RsaI GTAC 5 cut(s) 75, 118, 285, 497, 893
RsaNI GTAC 5 cut(s) 74, 117, 284, 496, 892
SacI GAGCTC 1 cut(s) 1094
SacII CCGCGG 1 cut(s) 625
SaqAI TTAA 2 cut(s) 108, 1086
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 3 cut(s) 334, 574, 761
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 2 cut(s) 741, 774
SduI GDGCHC 1 cut(s) 1094
SfaNI GCATC 1 cut(s) 979
Sfr303I CCGCGG 1 cut(s) 625
SfuI TTCGAA 1 cut(s) 755
SgrBI CCGCGG 1 cut(s) 625
SinI GGWCC 1 cut(s) 263
SseBI AGGCCT 2 cut(s) 208, 768
SsiI CCGC 4 cut(s) 20, 622, 624, 1010
SspI AATATT 1 cut(s) 389
SspMI CTAG 2 cut(s) 728, 1049
SstI GAGCTC 1 cut(s) 1094
StuI AGGCCT 2 cut(s) 208, 768
StyD4I CCNGG 2 cut(s) 739, 772
StyI CCWWGG 2 cut(s) 611, 639
TaaI ACNGT 5 cut(s) 187, 382, 697, 792, 836
TaqI TCGA 4 cut(s) 755, 780, 939, 1068
TatI WGTACW 4 cut(s) 116, 283, 495, 891
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 4 cut(s) 83, 236, 299, 373
Tru1I TTAA 2 cut(s) 108, 1086
Tru9I TTAA 2 cut(s) 108, 1086
TscAI CASTG 3 cut(s) 702, 795, 839
TseFI GTSAC 1 cut(s) 697
Tsp45I GTSAC 1 cut(s) 697
TspRI CASTG 3 cut(s) 702, 795, 839
VpaK11BI GGWCC 1 cut(s) 263
XagI CCTNNNNNAGG 1 cut(s) 676
XapI RAATTY 5 cut(s) 43, 59, 268, 502, 933
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 2 cut(s) 196, 898
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 2 cut(s) 728, 1049
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 2 cut(s) 6, 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.