MD13G1051500.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001480
Physical Location & Seq
Reverse (-)
3668476 .. 3669757
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1051500.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGTATGTGACAAGGCCTCTGTCTGTGTATAAAAGTTCTCCCGAGTCACTGTCTCTTCCACCTCCGGAGGGCCCAAATTCTGGCTGTCTTGTACTCCATGACGACGATTCAATTGAGATAAACTGTTGCGGATGCGAGGACGACGAGGTTAAAGGTTTGCCTTTCCCTCAGAACATGGATCTAACCGTTGGATATGGCTCAGATAACGATGATGTTGCCTTCATTCCAGTGCTTGATCAACCCTTGTCTTCCAATAGATACCATGTCATACTTCGAAGAGGCCGCCATAAAGGGGAAGCATGCACAAATACGAGGGAAGAGGATACGGATATTGGCTGTTTCGGAGGTAAAAGTATACCAGATGCTGAACCAAAACCATTGGATCCGTCAGACATTTATCAACAAATTGAGATAGTTCATTGGGAGGGAGAAAGAAATCGTTTTTTTGCCAAGTCTGTTGATCCAGATGGTTTTCCTCCTTACTTCTTGAGGAGGAAAGGGTGGAACGTGAGAATGAGCACACCATATCGTTACCAATTGCGTGAAGCCTCGGGACTCAACTCTTCGCTACGAGCTAGCCTTCCTGGGTTCGATTTTTCATTATCACATGACTGCTCTGAAGTTGTGTGTGTTGGTAAGTGGTATTGTCCTTTCATGTTTGTTAAGGAAGGAGGGGTGAAGCTGAAGGACCAAGTGAAAAATTGTATGTACTACGAAATTAAACTTGAGCAAAGATGGGAAAAGATTTTCGACAACGTTAATGACAACGCTGAAAGAAAAAAGAATCCTGCTGTGTTTGTGGATGCTTTTGTTCACAGAGAGGCGGTTTATGTGGGTGGAAAGGAGGCTGTTTGGGATGAAAGAAATGCTGGTGCGGGTGATATGTTCATGTGGTTTAAGAGTTTTGATGGGGTGGGAGAAGAAACTAGTGTGGGATTGAGCATGAAAGTCGTAGAGAGAATGAAATGGGAACCAGAAAGAGCTGGATGGGTTGGCGGGGATGAAAGGCAACTGAGGGTGGAGAGAGAGGAAGAGTTTAGGGGGACGGGCGGTGTCGGGTGGAATAGGTTTAGTTGTTATGTGTTGGTAGAGAGGTTTGTACTGAAGAGAATGTCTATGACTGGAAGCGCAGCAGTAATACTCTCATATGATTTCAAGCACACTCACCAGAGTAGGAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

397

Amino Acids

45.22

Weight (kDa)

5.41

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 114 2.5e-30 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 355
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 6 cut(s) 129, 283, 824, 875, 996, 1050
AclI AACGTT 1 cut(s) 756
AclWI GGATC 4 cut(s) 186, 377, 390, 455
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 3 cut(s) 639, 704, 1124
AfaI GTAC 3 cut(s) 93, 710, 1101
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 292
AgsI TTSAA 2 cut(s) 111, 1156
AhlI ACTAGT 1 cut(s) 926
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 3 cut(s) 575, 682, 983
AluI AGCT 3 cut(s) 575, 682, 983
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 4 cut(s) 186, 377, 390, 455
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 2 cut(s) 41, 550
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 3 cut(s) 14, 70, 280
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 1130
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 1 cut(s) 1130
AspS9I GGNCC 3 cut(s) 70, 71, 688
AsuHPI GGTGA 3 cut(s) 688, 890, 1157
AsuII TTCGAA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 575
AvaI CYCGRG 2 cut(s) 41, 550
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 1142
BccI CCATC 4 cut(s) 461, 729, 902, 981
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 931, 965
BciT130I CCWGG 1 cut(s) 585
BciVI GTATCC 1 cut(s) 316
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 2 cut(s) 576, 927
BfuI GTATCC 1 cut(s) 316
BisI GCNGC 2 cut(s) 283, 1131
BlsI GCNGC 2 cut(s) 284, 1132
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 41, 550
BmgT120I GGNCC 3 cut(s) 70, 71, 688
BmiI GGNNCC 3 cut(s) 72, 384, 972
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 3 cut(s) 122, 352, 793
BmtI GCTAGC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 508, 746
BsaJI CCNNGG 2 cut(s) 549, 584
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 292
Bse1I ACTGG 2 cut(s) 227, 1126
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 549, 584
BseGI GGATG 5 cut(s) 137, 808, 862, 992, 1006
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 292
BseMII CTCAG 3 cut(s) 182, 213, 1004
BseNI ACTGG 2 cut(s) 227, 1126
BseRI GAGGAG 1 cut(s) 505
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 1142
BshFI GGCC 3 cut(s) 16, 72, 282
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 2 cut(s) 41, 550
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 2 cut(s) 567, 1057
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 292
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 2 cut(s) 567, 1057
BsnI GGCC 3 cut(s) 16, 72, 282
BsoBI CYCGRG 2 cut(s) 41, 550
Bsp119I TTCGAA 1 cut(s) 274
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 74, 521
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 4 cut(s) 178, 235, 382, 460
BspACI CCGC 6 cut(s) 129, 283, 824, 875, 996, 1050
BspANI GGCC 3 cut(s) 16, 72, 282
BspCNI CTCAG 3 cut(s) 181, 212, 1005
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 72, 384, 972
BspOI GCTAGC 1 cut(s) 579
BspPI GGATC 4 cut(s) 186, 377, 390, 455
BspT104I TTCGAA 1 cut(s) 274
BsrI ACTGG 2 cut(s) 227, 1126
BssECI CCNNGG 2 cut(s) 549, 584
BssMI GATC 4 cut(s) 178, 235, 382, 460
BssNAI GTATAC 1 cut(s) 356
Bst1107I GTATAC 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 3 cut(s) 51, 125, 187
Bst6I CTCTTC 6 cut(s) 60, 271, 312, 568, 1026, 1100
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 301, 577
BstDEI CTNAG 3 cut(s) 168, 199, 1013
BstF5I GGATG 5 cut(s) 137, 808, 862, 992, 1006
BstHHI GCGC 1 cut(s) 1130
BstKTI GATC 4 cut(s) 181, 238, 385, 463
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 4 cut(s) 178, 235, 382, 460
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 583
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 1142
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 2 cut(s) 178, 382
BstYI RGATCY 2 cut(s) 178, 382
BstZ17I GTATAC 1 cut(s) 356
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 3 cut(s) 16, 72, 282
BtsCI GGATG 5 cut(s) 137, 808, 862, 992, 1006
BtsIMutI CAGTG 2 cut(s) 47, 234
Cac8I GCNNGC 2 cut(s) 301, 577
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 1130
Cfr13I GGNCC 3 cut(s) 70, 71, 688
Csp6I GTAC 3 cut(s) 92, 709, 1100
CviAII CATG 8 cut(s) 98, 175, 263, 300, 608, 655, 889, 943
CviQI GTAC 3 cut(s) 92, 709, 1100
DdeI CTNAG 3 cut(s) 168, 199, 1013
DpnI GATC 4 cut(s) 180, 237, 384, 462
DpnII GATC 4 cut(s) 178, 235, 382, 460
Eam1104I CTCTTC 6 cut(s) 60, 271, 312, 568, 1026, 1100
EarI CTCTTC 6 cut(s) 60, 271, 312, 568, 1026, 1100
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 639, 704, 1124
Eco88I CYCGRG 2 cut(s) 41, 550
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 8 cut(s) 101, 178, 266, 303, 611, 658, 892, 946
FaqI GGGAC 2 cut(s) 567, 1057
FatI CATG 8 cut(s) 97, 174, 262, 299, 607, 654, 888, 942
FauI CCCGC 2 cut(s) 868, 989
FauNDI CATATG 1 cut(s) 1147
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 283, 1131
FokI GGATG 5 cut(s) 144, 815, 869, 999, 1013
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 2 cut(s) 283, 1131
FspBI CTAG 2 cut(s) 576, 927
GlaI GCGC 1 cut(s) 1129
GluI GCNGC 2 cut(s) 283, 1131
HaeIII GGCC 3 cut(s) 16, 72, 282
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 1130
Hin1II CATG 8 cut(s) 101, 178, 266, 303, 611, 658, 892, 946
Hin6I GCGC 1 cut(s) 1128
HinP1I GCGC 1 cut(s) 1128
HinfI GANTC 4 cut(s) 44, 107, 555, 784
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 688, 890, 1157
Hpy166II GTNNAC 2 cut(s) 356, 814
Hpy188I TCNGA 5 cut(s) 171, 202, 344, 391, 619
Hpy188III TCNNGA 5 cut(s) 41, 65, 464, 487, 552
Hpy8I GTNNAC 2 cut(s) 356, 814
Hpy99I CGWCG 2 cut(s) 107, 146
HpyAV CCTTC 4 cut(s) 229, 590, 662, 679
HpyCH4III ACNGT 3 cut(s) 51, 125, 187
HpyCH4IV ACGT 2 cut(s) 507, 756
HpyCH4V TGCA 1 cut(s) 303
HpyF3I CTNAG 3 cut(s) 168, 199, 1013
HpySE526I ACGT 2 cut(s) 507, 756
Hsp92II CATG 8 cut(s) 101, 178, 266, 303, 611, 658, 892, 946
HspAI GCGC 1 cut(s) 1128
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 4 cut(s) 178, 235, 382, 460
LmnI GCTCC 1 cut(s) 1176
Lsp1109I GCAGC 1 cut(s) 1142
LweI GCATC 3 cut(s) 122, 352, 793
MaeI CTAG 2 cut(s) 576, 927
MaeII ACGT 2 cut(s) 507, 756
MaeIII GTNAC 3 cut(s) 7, 45, 530
MalI GATC 4 cut(s) 180, 237, 384, 462
MboI GATC 4 cut(s) 178, 235, 382, 460
MboII GAAGA 8 cut(s) 47, 240, 288, 329, 555, 932, 1043, 1117
MfeI CAATTG 2 cut(s) 111, 536
MflI RGATCY 2 cut(s) 178, 382
MhlI GDGCHC 2 cut(s) 74, 521
MluCI AATT 6 cut(s) 76, 111, 405, 536, 700, 717
MlyI GAGTC 2 cut(s) 53, 549
MmeI TCCRAC 1 cut(s) 169
MroI TCCGGA 1 cut(s) 64
MseI TTAA 5 cut(s) 150, 663, 720, 759, 897
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 2 cut(s) 111, 536
MvaI CCWGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 1147
NdeII GATC 4 cut(s) 178, 235, 382, 460
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 8 cut(s) 101, 178, 266, 303, 611, 658, 892, 946
NlaIV GGNNCC 3 cut(s) 72, 384, 972
NmuCI GTSAC 2 cut(s) 7, 45
NspI RCATGY 1 cut(s) 303
NspV TTCGAA 1 cut(s) 274
PaeI GCATGC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 16
PfeI GAWTC 2 cut(s) 107, 784
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 284, 1132
PleI GAGTC 2 cut(s) 52, 549
PpsI GAGTC 2 cut(s) 52, 549
Psp1406I AACGTT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 72, 384, 972
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 3 cut(s) 70, 71, 688
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 2 cut(s) 178, 382
RsaI GTAC 3 cut(s) 93, 710, 1101
RsaNI GTAC 3 cut(s) 92, 709, 1100
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 5 cut(s) 150, 663, 720, 759, 897
SatI GCNGC 2 cut(s) 283, 1131
Sau3AI GATC 4 cut(s) 178, 235, 382, 460
Sau96I GGNCC 3 cut(s) 70, 71, 688
SchI GAGTC 2 cut(s) 53, 549
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 2 cut(s) 74, 521
SfaNI GCATC 3 cut(s) 122, 352, 793
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 487, 725
SmoI CTYRAG 2 cut(s) 487, 725
SpeI ACTAGT 1 cut(s) 926
SphI GCATGC 1 cut(s) 303
Sse9I AATT 6 cut(s) 76, 111, 405, 536, 700, 717
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 6 cut(s) 129, 283, 824, 875, 996, 1050
SspMI CTAG 2 cut(s) 576, 927
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 3 cut(s) 51, 125, 187
TaiI ACGT 2 cut(s) 510, 759
TaqI TCGA 3 cut(s) 274, 591, 750
TasI AATT 6 cut(s) 76, 111, 405, 536, 700, 717
TatI WGTACW 3 cut(s) 91, 708, 1099
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 107, 784
Tru1I TTAA 5 cut(s) 150, 663, 720, 759, 897
Tru9I TTAA 5 cut(s) 150, 663, 720, 759, 897
TscAI CASTG 2 cut(s) 54, 234
TseFI GTSAC 2 cut(s) 7, 45
TseI GCWGC 1 cut(s) 1130
Tsp45I GTSAC 2 cut(s) 7, 45
TspDTI ATGAA 9 cut(s) 211, 407, 588, 643, 873, 877, 959, 977, 1017
TspGWI ACGGA 2 cut(s) 341, 375
TspRI CASTG 2 cut(s) 54, 234
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 355
XspI CTAG 2 cut(s) 576, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.