Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

51815941 .. 51817303

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTATGTAACAAGGCCTCTGTCTATGTATAGAAGGTCTCCCGATTCACTATCACTACCAACGCCGGAAGGTCCAAATTCCGGTTATCTTGTACTACACGATGAAGAATCAGATGAGACTACCTGTTTCGGATGTTGCAAAGATCCTCAGGTGCAAGGCTTGCCTTTCCCTCAGAACAAGAATCTCACAGTTGAATATTCCTCAGATGATGATGATGTTGCCTTCATTCCAGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGATACGCCGGAATGGGAGACACAGAGGGAAAGTGTACACAAATTCAAAGGAAGAGGACATGGCAGATTGCTGTTTTGGCAAAGCTGTTCAAGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAGGAAGCACCGCGGCTACTTTACTGCCAAGGCTGTTGCTTCAGATGGGTTTCCTCCTTCCTTTTTGAGGAGAAAAGATTGGACAGTGACCATGAACACACCCCATCATTATCAACTAGGTGAAGCTCCAGGACTCAACGCTTCGAAGCGATCAGGCCTTCCTGGTTTCGACTTTCCACTGTCCAAAGATTGTTCTGAGGCTATGGTAGTTGGCAAGTGGCACTGTCCTTTCTTGTTTATCAAGGAAGGGGGACTGGAGTTGAAGCACCAAATGAAGCAGTACATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAATACAATGAAGGAAAGAGCAACAATGCTAATGCTGTGTTTGTGGATGCATTTGTTCAAAGAGAGGCGGTATTTATTGCTGGAAGAGAAGCTTATTCCGATAATCTAGACAGAGTTCATATCGTCGATGATTTCATGTGGTTTAAGAGCTCTGATGGTGGGGGAGGAGAAAGGAGTGTAGGGTTGAGCATGAAAATTATTGAGAGAATGAAGTGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGAGAAAAGAAAAGTGCGAGTGGAGAAAACCGAAAAGTTTGGGGGAACTGATGGTTGGAATAGATTTTCTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGAGAATGGATGAAAGCTTAGCACTATTGGCATATGATTTCAGGCACACTCACCAGATTAGGTGCAAATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

390

Amino Acids

45.02

Weight (kDa)

7.15

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	23 - 115	1.2e-37	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	432
AciI	CCGC	3 cut(s)	430, 432, 818
AclWI	GGATC	3 cut(s)	137, 377, 390
AcsI	RAATTY	3 cut(s)	76, 310, 741
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	93, 305, 701
AfiI	CCNNNNNNNGG	2 cut(s)	80, 486
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	6 cut(s)	194, 315, 359, 682, 809, 1096
AjnI	CCWGG	2 cut(s)	547, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	1033, 1065
AluBI	AGCT	5 cut(s)	353, 545, 842, 900, 1113
AluI	AGCT	5 cut(s)	353, 545, 842, 900, 1113
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	4 cut(s)	42, 110, 280, 712
AlwI	GGATC	3 cut(s)	137, 377, 390
AoxI	GGCC	2 cut(s)	14, 574
ApoI	RAATTY	3 cut(s)	76, 310, 741
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	551, 1139
AsuII	TTCGAA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	902
Bbv12I	GWGCWC	1 cut(s)	902
BccI	CCATC	7 cut(s)	394, 458, 531, 726, 899, 978, 1040
BciT130I	CCWGG	2 cut(s)	549, 582
BcoDI	GTCTC	4 cut(s)	42, 110, 280, 712
BfaI	CTAG	2 cut(s)	536, 857
BisI	GCNGC	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	1114
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	549, 582
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	549, 582
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	3 cut(s)	531, 695, 743
Bpu1102I	GCTNAGC	1 cut(s)	1114
Bpu14I	TTCGAA	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	419, 430, 447
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 486
Bse1I	ACTGG	3 cut(s)	230, 678, 726
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	549, 582
BseDI	CCNNGG	3 cut(s)	419, 430, 447
BseGI	GGATG	4 cut(s)	137, 802, 989, 1111
BseLI	CCNNNNNNNGG	2 cut(s)	80, 486
BseMII	CTCAG	4 cut(s)	161, 185, 216, 606
BseNI	ACTGG	3 cut(s)	230, 678, 726
BseRI	GAGGAG	2 cut(s)	502, 930
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	16, 576
BsiHKAI	GWGCWC	1 cut(s)	902
BsiSI	CCGG	3 cut(s)	65, 81, 277
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	80, 486
BsmAI	GTCTC	4 cut(s)	42, 110, 280, 712
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	16, 576
Bso31I	GGTCTC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	142, 382, 569
Bsp1720I	GCTNAGC	1 cut(s)	1114
BspACI	CCGC	3 cut(s)	430, 432, 818
BspANI	GGCC	2 cut(s)	16, 576
BspCNI	CTCAG	4 cut(s)	160, 184, 215, 607
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	137, 377, 390
BspT104I	TTCGAA	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	230, 678, 726
BssECI	CCNNGG	3 cut(s)	419, 430, 447
BssMI	GATC	3 cut(s)	142, 382, 569
BssT1I	CCWWGG	2 cut(s)	419, 447
Bst2UI	CCWGG	2 cut(s)	549, 582
Bst4CI	ACNGT	4 cut(s)	190, 505, 600, 644
Bst6I	CTCTTC	3 cut(s)	315, 829, 1091
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	5 cut(s)	147, 171, 202, 615, 1114
BstDSI	CCRYGG	1 cut(s)	430
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstF5I	GGATG	4 cut(s)	137, 802, 989, 1111
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	145, 385, 572
BstMAI	GTCTC	4 cut(s)	42, 110, 280, 712
BstMBI	GATC	3 cut(s)	142, 382, 569
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 345, 1124
BstNI	CCWGG	2 cut(s)	549, 582
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	547, 580
BstUI	CGCG	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	142, 382
BstYI	RGATCY	2 cut(s)	142, 382
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	16, 576
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	4 cut(s)	137, 802, 989, 1111
BtsIMutI	CAGTG	3 cut(s)	510, 596, 640
Cac8I	GCNNGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	71
Cfr42I	CCGCGG	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	92, 304, 700
CviAII	CATG	6 cut(s)	266, 328, 511, 703, 886, 940
CviQI	GTAC	3 cut(s)	92, 304, 700
DdeI	CTNAG	5 cut(s)	147, 171, 202, 615, 1114
DpnI	GATC	3 cut(s)	144, 384, 571
DpnII	GATC	3 cut(s)	142, 382, 569
Eam1104I	CTCTTC	3 cut(s)	315, 829, 1091
EarI	CTCTTC	3 cut(s)	315, 829, 1091
Ecl136II	GAGCTC	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	419, 447
Eco147I	AGGCCT	2 cut(s)	16, 576
Eco24I	GRGCYC	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	900
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	900
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	547, 580
EcoT14I	CCWWGG	2 cut(s)	419, 447
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	902
ErhI	CCWWGG	2 cut(s)	419, 447
FaeI	CATG	6 cut(s)	269, 331, 514, 706, 889, 943
FalI	AAGNNNNNCTT	2 cut(s)	826, 858
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	6 cut(s)	265, 327, 510, 702, 885, 939
FauNDI	CATATG	1 cut(s)	1129
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	4 cut(s)	144, 809, 996, 1118
FriOI	GRGCYC	1 cut(s)	902
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	2 cut(s)	536, 857
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	3 cut(s)	531, 695, 743
HaeIII	GGCC	2 cut(s)	16, 576
HapII	CCGG	3 cut(s)	65, 81, 277
Hin1II	CATG	6 cut(s)	269, 331, 514, 706, 889, 943
HindIII	AAGCTT	2 cut(s)	840, 1111
HinfI	GANTC	4 cut(s)	44, 107, 181, 552
HpaII	CCGG	3 cut(s)	65, 81, 277
HphI	GGTGA	2 cut(s)	551, 1139
Hpy166II	GTNNAC	2 cut(s)	304, 306
Hpy188I	TCNGA	9 cut(s)	112, 131, 174, 205, 391, 463, 616, 850, 904
Hpy188III	TCNNGA	4 cut(s)	41, 236, 359, 857
Hpy8I	GTNNAC	2 cut(s)	304, 306
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	7 cut(s)	27, 62, 232, 486, 587, 659, 755
HpyCH4III	ACNGT	4 cut(s)	190, 505, 600, 644
HpyCH4V	TGCA	4 cut(s)	138, 154, 800, 1161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 345, 1124
HpyF3I	CTNAG	5 cut(s)	147, 171, 202, 615, 1114
Hsp92II	CATG	6 cut(s)	269, 331, 514, 706, 889, 943
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	142, 382, 569
LmnI	GCTCC	3 cut(s)	550, 724, 967
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	2 cut(s)	536, 857
MaeIII	GTNAC	2 cut(s)	7, 505
MalI	GATC	3 cut(s)	144, 384, 571
MboI	GATC	3 cut(s)	142, 382, 569
MboII	GAAGA	4 cut(s)	116, 332, 846, 1108
MflI	RGATCY	2 cut(s)	142, 382
MhlI	GDGCHC	1 cut(s)	902
MluCI	AATT	6 cut(s)	76, 310, 405, 414, 741, 945
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	961, 1031
Mph1103I	ATGCAT	1 cut(s)	802
MseI	TTAA	1 cut(s)	894
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	3 cut(s)	65, 81, 277
MspR9I	CCNGG	2 cut(s)	549, 582
MvaI	CCWGG	2 cut(s)	549, 582
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	160, 345, 1124
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	3 cut(s)	142, 382, 569
NlaIII	CATG	6 cut(s)	269, 331, 514, 706, 889, 943
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	563
PceI	AGGCCT	2 cut(s)	16, 576
PciI	ACATGT	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	44, 107, 181
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PscI	ACATGT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	902
Psp6I	CCWGG	2 cut(s)	547, 580
PspGI	CCWGG	2 cut(s)	547, 580
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	142, 382
RsaI	GTAC	3 cut(s)	93, 305, 701
RsaNI	GTAC	3 cut(s)	92, 304, 700
SacI	GAGCTC	1 cut(s)	902
SacII	CCGCGG	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	3 cut(s)	142, 382, 569
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	2 cut(s)	549, 582
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	1 cut(s)	787
Sfr303I	CCGCGG	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	563
SgrBI	CCGCGG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	6 cut(s)	76, 310, 405, 414, 741, 945
SseBI	AGGCCT	2 cut(s)	16, 576
SsiI	CCGC	3 cut(s)	430, 432, 818
SspI	AATATT	1 cut(s)	197
SspMI	CTAG	2 cut(s)	536, 857
SstI	GAGCTC	1 cut(s)	902
StuI	AGGCCT	2 cut(s)	16, 576
StyD4I	CCNGG	2 cut(s)	547, 580
StyI	CCWWGG	2 cut(s)	419, 447
TaaI	ACNGT	4 cut(s)	190, 505, 600, 644
TaqI	TCGA	4 cut(s)	563, 588, 747, 876
TasI	AATT	6 cut(s)	76, 310, 405, 414, 741, 945
TatI	WGTACW	3 cut(s)	91, 303, 699
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	3 cut(s)	44, 107, 181
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	3 cut(s)	510, 603, 647
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspRI	CASTG	3 cut(s)	510, 603, 647
VpaK11BI	GGWCC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	3 cut(s)	76, 310, 741
XbaI	TCTAGA	1 cut(s)	856
XceI	RCATGY	1 cut(s)	706
XspI	CTAG	2 cut(s)	536, 857
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.