MD13G1051800.v1.1

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001480
Physical Location & Seq
Reverse (-)
3688976 .. 3690286
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1051800.v1.1.491

Sequence Viewer

Length: 1191 bp
ATGTATGTTACAAAGCCTCTGTCTGTGTATAGAAGGTCTCCTCAGTTACTTTCTCTACCGCCCCCGGAGGGGCCAAATTCTGGTTATCTTGTACTCCATGACGACGAATCAGTCGAGATAAACTGTTGCGGATGCGAGGACAACGTGGTTAGAGGTTTGCCTTTCCCTCAGAACAAGGATCTAACCGTTGGATATGGCTCAGATGACGATGCTGTTGCCTTCATTCCGGTGCTTAATCAACCCTTGTCATCCAATCAATACCATGTCATACGTCGAAGAGGGAGACATAAAGGGGAAGCATGCACAAATACGAGGGAAGAGGACACGGATATTGGCTGTTGCGGCGGTAAAAGTATACCAAATGCTAAACCAAAACCATTGGACCCGTCAGACATATATCAGCAATTTAGGATACATCCCAAGGAGATGGGCAGCAGTCGTTTTTTTGCCAAGTCCGTTGATCCAGATGGTTTTCCTCCTTACTTCTTGAGGAGGAAAGGGTGGAGCGTGAGAATGAGCACACTGGATCGTAACCAATTGGGTGAAGCCTCAGGACTCAACTCTTCGCTACGAGCTAGCCTTCCCAGGTTTGATTTTCCATTATCACATGATTACTCTGAAGTTGTGTGTGTTGGCAAGTGGTATTGTCATTTCATGTTTGTCAAGGAAGGAGGGGTGAAGTTGAAGGACCAAATGAAATATTCCATGTACTATGAAATAAAACTTGAGCAAAGATGGGAAAAGATTTTTGACAGCGTTAATGAGAACGCCGAAGGAAAAAAGAATCCTGCTGTGTTTGTGGATGCTTTTGTTCAAAGAGAGGTGGTTTATGTGGGTGGACAGGAGGCTGTTTGGGATGAAAGAAATGAGGGTGCGGGTGATGTGTTCGTGTGGTTTAAGAGTTTTCATGGGGTGGGAGGGGAAACAAGTGTTGGATTGAGCATGAAATTTTTTGAAAGAATGAAATGGGAGCAAGAAAGAGTTGGATGGGTTGATGGGGATGAAAGGCAAGTGAGGGTGGAGAGAGTGGAAGAGTTTGGGGGAAAGGGTGGTGGCGGGTGGAAGAGATTTAGTTGTTATGTGCTGGTAGAGAGGTTTGTATTGAAGAGAATGTCTACGACTGGAAGCGCCGCAGGACTACTCGCATATGATTTCAAGCACACTCACCAGATTAGGGGAAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

397

Amino Acids

45.1

Weight (kDa)

7.1

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 113 3.3e-31 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 2 cut(s) 355, 1115
AciI CCGC 7 cut(s) 59, 129, 342, 345, 875, 1056, 1131
AclWI GGATC 3 cut(s) 186, 455, 534
AcsI RAATTY 2 cut(s) 76, 947
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 2 cut(s) 93, 710
AfiI CCNNNNNNNGG 4 cut(s) 68, 69, 80, 1174
AgsI TTSAA 5 cut(s) 685, 815, 956, 1105, 1156
AjnI CCWGG 1 cut(s) 584
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 2 cut(s) 42, 277
AlwI GGATC 3 cut(s) 186, 455, 534
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 2 cut(s) 76, 947
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 1 cut(s) 1130
AspS9I GGNCC 3 cut(s) 71, 382, 688
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 4 cut(s) 554, 688, 890, 1157
AsuNHI GCTAGC 1 cut(s) 575
AvaII GGWCC 2 cut(s) 382, 688
AxyI CCTNAGG 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 444
BccI CCATC 5 cut(s) 421, 461, 729, 981, 989
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 42, 277
BfaI CTAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 1131
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 3 cut(s) 343, 433, 1131
BlsI GCNGC 3 cut(s) 344, 434, 1132
Bme1390I CCNGG 2 cut(s) 65, 586
Bme18I GGWCC 2 cut(s) 382, 688
BmgT120I GGNCC 3 cut(s) 71, 382, 688
BmiI GGNNCC 2 cut(s) 72, 384
BmrFI CCNGG 2 cut(s) 65, 586
BmsI GCATC 3 cut(s) 122, 199, 793
BmtI GCTAGC 1 cut(s) 579
BpuEI CTTGAG 2 cut(s) 508, 746
BpuMI CCSGG 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 63, 420, 584
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 69, 80, 1174
Bse1I ACTGG 2 cut(s) 528, 1126
Bse21I CCTNAGG 1 cut(s) 550
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 3 cut(s) 63, 420, 584
BseGI GGATG 7 cut(s) 137, 248, 415, 808, 862, 992, 1006
BseLI CCNNNNNNNGG 4 cut(s) 68, 69, 80, 1174
BseMII CTCAG 4 cut(s) 56, 182, 213, 564
BseNI ACTGG 2 cut(s) 528, 1126
BseRI GAGGAG 2 cut(s) 30, 505
BseXI GCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 521
BsiSI CCGG 2 cut(s) 65, 227
BslI CCNNNNNNNGG 4 cut(s) 68, 69, 80, 1174
BsmAI GTCTC 2 cut(s) 42, 277
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 3 cut(s) 178, 460, 526
BspACI CCGC 7 cut(s) 59, 129, 342, 345, 875, 1056, 1131
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 4 cut(s) 55, 181, 212, 563
BspLI GGNNCC 2 cut(s) 72, 384
BspOI GCTAGC 1 cut(s) 579
BspPI GGATC 3 cut(s) 186, 455, 534
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 528, 1126
BssECI CCNNGG 3 cut(s) 63, 420, 584
BssMI GATC 3 cut(s) 178, 460, 526
BssNAI GTATAC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 420
Bst1107I GTATAC 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 2 cut(s) 125, 187
Bst6I CTCTTC 6 cut(s) 271, 312, 568, 1026, 1058, 1100
BstC8I GCNNGC 2 cut(s) 301, 577
BstDEI CTNAG 4 cut(s) 42, 168, 199, 550
BstF5I GGATG 7 cut(s) 137, 248, 415, 808, 862, 992, 1006
BstH2I RGCGCY 1 cut(s) 1131
BstHHI GCGC 1 cut(s) 1130
BstKTI GATC 3 cut(s) 181, 463, 529
BstMAI GTCTC 2 cut(s) 42, 277
BstMBI GATC 3 cut(s) 178, 460, 526
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 1 cut(s) 586
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 63, 584
BstV1I GCAGC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 356
Bsu36I CCTNAGG 1 cut(s) 550
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 7 cut(s) 137, 248, 415, 808, 862, 992, 1006
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 301, 577
CfoI GCGC 1 cut(s) 1130
Cfr13I GGNCC 3 cut(s) 71, 382, 688
Csp6I GTAC 2 cut(s) 92, 709
CviAII CATG 8 cut(s) 98, 263, 300, 608, 655, 706, 908, 943
CviJI RGCY 8 cut(s) 16, 73, 198, 336, 548, 575, 579, 848
CviKI_1 RGCY 8 cut(s) 16, 73, 198, 336, 548, 575, 579, 848
CviQI GTAC 2 cut(s) 92, 709
DdeI CTNAG 4 cut(s) 42, 168, 199, 550
DpnI GATC 3 cut(s) 180, 462, 528
DpnII GATC 3 cut(s) 178, 460, 526
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 6 cut(s) 271, 312, 568, 1026, 1058, 1100
EarI CTCTTC 6 cut(s) 271, 312, 568, 1026, 1058, 1100
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 382, 688
Eco57I CTGAAG 1 cut(s) 639
Eco81I CCTNAGG 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 8 cut(s) 101, 266, 303, 611, 658, 709, 911, 946
FatI CATG 8 cut(s) 97, 262, 299, 607, 654, 705, 907, 942
FauI CCCGC 2 cut(s) 868, 1049
FauNDI CATATG 1 cut(s) 1147
FblI GTMKAC 2 cut(s) 355, 1115
Fnu4HI GCNGC 3 cut(s) 343, 433, 1131
FokI GGATG 7 cut(s) 144, 235, 402, 815, 869, 999, 1013
Fsp4HI GCNGC 3 cut(s) 343, 433, 1131
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 1129
GluI GCNGC 3 cut(s) 343, 433, 1131
HaeII RGCGCY 1 cut(s) 1131
HaeIII GGCC 1 cut(s) 73
HapII CCGG 2 cut(s) 65, 227
HhaI GCGC 1 cut(s) 1130
Hin1II CATG 8 cut(s) 101, 266, 303, 611, 658, 709, 911, 946
Hin6I GCGC 1 cut(s) 1128
HinP1I GCGC 1 cut(s) 1128
HinfI GANTC 3 cut(s) 107, 555, 784
HpaII CCGG 2 cut(s) 65, 227
HphI GGTGA 4 cut(s) 554, 688, 890, 1157
Hpy166II GTNNAC 3 cut(s) 356, 839, 1116
Hpy188I TCNGA 4 cut(s) 171, 202, 391, 619
Hpy188III TCNNGA 4 cut(s) 115, 464, 487, 552
Hpy8I GTNNAC 3 cut(s) 356, 839, 1116
Hpy99I CGWCG 2 cut(s) 107, 276
HpyAV CCTTC 6 cut(s) 27, 229, 590, 662, 679, 767
HpyCH4III ACNGT 2 cut(s) 125, 187
HpyCH4IV ACGT 2 cut(s) 144, 271
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 4 cut(s) 42, 168, 199, 550
HpySE526I ACGT 2 cut(s) 144, 271
Hsp92II CATG 8 cut(s) 101, 266, 303, 611, 658, 709, 911, 946
HspAI GCGC 1 cut(s) 1128
Kzo9I GATC 3 cut(s) 178, 460, 526
LmnI GCTCC 2 cut(s) 504, 970
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 3 cut(s) 122, 199, 793
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 144, 271
MaeIII GTNAC 3 cut(s) 7, 45, 530
MalI GATC 3 cut(s) 180, 462, 528
MboI GATC 3 cut(s) 178, 460, 526
MboII GAAGA 6 cut(s) 288, 329, 555, 1043, 1075, 1117
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 4 cut(s) 76, 404, 536, 947
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 3 cut(s) 169, 913, 964
MseI TTAA 3 cut(s) 234, 759, 897
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 65, 227
MspR9I CCNGG 2 cut(s) 65, 586
MunI CAATTG 1 cut(s) 536
MvaI CCWGG 1 cut(s) 586
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 65
NdeI CATATG 1 cut(s) 1147
NdeII GATC 3 cut(s) 178, 460, 526
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 8 cut(s) 101, 266, 303, 611, 658, 709, 911, 946
NlaIV GGNNCC 2 cut(s) 72, 384
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 2 cut(s) 107, 784
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 3 cut(s) 344, 434, 1132
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 2 cut(s) 72, 384
PspPI GGNCC 3 cut(s) 71, 382, 688
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 2 cut(s) 93, 710
RsaNI GTAC 2 cut(s) 92, 709
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 3 cut(s) 234, 759, 897
SatI GCNGC 3 cut(s) 343, 433, 1131
Sau3AI GATC 3 cut(s) 178, 460, 526
Sau96I GGNCC 3 cut(s) 71, 382, 688
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 2 cut(s) 65, 586
SduI GDGCHC 1 cut(s) 521
SetI ASST 8 cut(s) 38, 147, 157, 274, 577, 590, 825, 1097
SfaNI GCATC 3 cut(s) 122, 199, 793
SinI GGWCC 2 cut(s) 382, 688
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 487, 725
SmoI CTYRAG 2 cut(s) 487, 725
SphI GCATGC 1 cut(s) 303
Sse9I AATT 4 cut(s) 76, 404, 536, 947
SsiI CCGC 7 cut(s) 59, 129, 342, 345, 875, 1056, 1131
SspI AATATT 1 cut(s) 701
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 2 cut(s) 63, 584
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 125, 187
TaiI ACGT 2 cut(s) 147, 274
TaqI TCGA 2 cut(s) 114, 274
TasI AATT 4 cut(s) 76, 404, 536, 947
TatI WGTACW 2 cut(s) 91, 708
TauI GCSGC 2 cut(s) 345, 1133
TfiI GAWTC 2 cut(s) 107, 784
Tru1I TTAA 3 cut(s) 234, 759, 897
Tru9I TTAA 3 cut(s) 234, 759, 897
TscAI CASTG 1 cut(s) 528
TseI GCWGC 1 cut(s) 432
TspDTI ATGAA 9 cut(s) 211, 643, 710, 729, 873, 896, 959, 977, 1017
TspGWI ACGGA 2 cut(s) 341, 445
TspRI CASTG 1 cut(s) 528
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 382, 688
XapI RAATTY 2 cut(s) 76, 947
XceI RCATGY 1 cut(s) 303
XmiI GTMKAC 2 cut(s) 355, 1115
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.