RLG00000006506

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001480
Physical Location & Seq
Forward (+)
7836465 .. 7838066
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006506

Sequence Viewer

Length: 846 bp
ATGGCAGATTGCTGTTTTGGCAAAGCTGTTCAAGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAGGAAGCACCGTGGCTACTTTACCGCCAAGGCTGTTGCTTCAGATGGGTTTCCTCCTTCCTTTTTGAGGAGAAAAGATTGGACAGTGACCATGAACACACCCCATCATTATCAACTAGGTGAAGCTCCAGGACTCAACGCTTCGAAGCGATCAGGCCTTCCTGGTTTCGACTTTCCACTGTCCAAAGATTGTTCTGAGGCTATGGTAGTTGGCAAGTGGCACTGTCCTTTCTTGTTTATCAAGGAAGGGGGACTCGAGTTGAAGCACCAAATGAAGCACTGCATGTTCTATGAAATGAGACTGGAGCAAAGATGGGAGAGAATTTTCGACAAGTACAATGAAGGAAAGAGCAACAATGCTAATGCTGTGTTTGTGGATGCATTTGTTCAAAGAGAGGCGGTATTTATTGCTGGAAGAGAAGCTTTTTCCGATAATCTAGACAGAGTTCATATCGTCGATGATTTCATGTGGTTTAAGAGCTCTGATGGTGGGGGAGGAGAAAGGAGTGTAGGGTTGAGCATGAAAATTATTGAGAGAATGAAGTGGGAGCAAGAAAGAGTTGGATGGGTTGGTGGGGAGAAAAGAAAAGTGCGAGTAGAGAAAACCGAAAAGTTAGGGGGAACTGATGGTTGGAATAGATTTTCTTGTTATGTGTTGGTGGAAAGGTTTGTGTTGAAGAGAATGGATGGAAGCTTAGCACTATTGGCATATGATTTCAAGCACACTCACCAGATTAGGTGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

282

Amino Acids

32.49

Weight (kDa)

8.86

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 491
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 5 cut(s) 32, 355, 482, 769, 811
AjnI CCWGG 2 cut(s) 220, 253
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
AluBI AGCT 5 cut(s) 26, 218, 515, 573, 786
AluI AGCT 5 cut(s) 26, 218, 515, 573, 786
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 50, 63
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 224, 812
AsuII TTCGAA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 347
BamHI GGATCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 575
BccI CCATC 8 cut(s) 67, 131, 204, 399, 572, 651, 713, 773
BciT130I CCWGG 2 cut(s) 222, 255
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 209, 530
BlpI GCTNAGC 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 222, 255
BmeT110I CYCGRG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 222, 255
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 204, 416
Bpu1102I GCTNAGC 1 cut(s) 787
Bpu14I TTCGAA 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 92, 103, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 399
BseBI CCWGG 2 cut(s) 222, 255
BseDI CCNNGG 3 cut(s) 92, 103, 120
BseGI GGATG 3 cut(s) 475, 662, 784
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 2 cut(s) 175, 603
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 2 cut(s) 55, 242
Bsp1720I GCTNAGC 1 cut(s) 787
BspACI CCGC 2 cut(s) 117, 491
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 50, 63
BspT104I TTCGAA 1 cut(s) 236
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 92, 103, 120
BssMI GATC 2 cut(s) 55, 242
BssT1I CCWWGG 2 cut(s) 92, 120
Bst2UI CCWGG 2 cut(s) 222, 255
Bst4CI ACNGT 4 cut(s) 104, 178, 273, 317
Bst6I CTCTTC 2 cut(s) 502, 764
BstBI TTCGAA 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 288, 787
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 157
BstF5I GGATG 3 cut(s) 475, 662, 784
BstKTI GATC 2 cut(s) 58, 245
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 55, 242
BstMWI GCNNNNNNNGC 2 cut(s) 18, 797
BstNI CCWGG 2 cut(s) 222, 255
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 220, 253
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 103
BtsCI GGATG 3 cut(s) 475, 662, 784
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 4 cut(s) 183, 269, 313, 370
Csp6I GTAC 1 cut(s) 427
CviAII CATG 4 cut(s) 184, 376, 559, 613
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 288, 787
DpnI GATC 2 cut(s) 57, 244
DpnII GATC 2 cut(s) 55, 242
Eam1104I CTCTTC 2 cut(s) 502, 764
EarI CTCTTC 2 cut(s) 502, 764
Ecl136II GAGCTC 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 92, 120
Eco147I AGGCCT 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 220, 253
EcoT14I CCWWGG 2 cut(s) 92, 120
EcoT22I ATGCAT 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 92, 120
FaeI CATG 4 cut(s) 187, 379, 562, 616
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 1 cut(s) 357
FatI CATG 4 cut(s) 183, 375, 558, 612
FauNDI CATATG 1 cut(s) 802
FokI GGATG 3 cut(s) 482, 669, 791
FriOI GRGCYC 1 cut(s) 575
FspBI CTAG 2 cut(s) 209, 530
GsuI CTGGAG 2 cut(s) 204, 416
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 4 cut(s) 187, 379, 562, 616
HindIII AAGCTT 2 cut(s) 513, 784
HinfI GANTC 2 cut(s) 225, 345
HphI GGTGA 2 cut(s) 224, 812
Hpy188I TCNGA 5 cut(s) 64, 136, 289, 523, 577
Hpy188III TCNNGA 2 cut(s) 32, 530
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 4 cut(s) 159, 260, 332, 428
HpyCH4III ACNGT 4 cut(s) 104, 178, 273, 317
HpyCH4V TGCA 3 cut(s) 375, 473, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 797
HpyF3I CTNAG 2 cut(s) 288, 787
Hsp92II CATG 4 cut(s) 187, 379, 562, 616
Kzo9I GATC 2 cut(s) 55, 242
LmnI GCTCC 3 cut(s) 223, 397, 640
LpnPI CCDG 8 cut(s) 207, 231, 234, 240, 267, 380, 489, 836
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 209, 530
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 57, 244
MboI GATC 2 cut(s) 55, 242
MboII GAAGA 2 cut(s) 519, 781
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 4 cut(s) 78, 87, 414, 618
MlyI GAGTC 2 cut(s) 219, 339
MmeI TCCRAC 2 cut(s) 634, 704
MnlI CCTC 5 cut(s) 153, 156, 283, 481, 581
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 1 cut(s) 567
MspR9I CCNGG 2 cut(s) 222, 255
MvaI CCWGG 2 cut(s) 222, 255
MwoI GCNNNNNNNGC 2 cut(s) 18, 797
NdeI CATATG 1 cut(s) 802
NdeII GATC 2 cut(s) 55, 242
NlaIII CATG 4 cut(s) 187, 379, 562, 616
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 347
PceI AGGCCT 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 220
PleI GAGTC 2 cut(s) 219, 339
PpsI GAGTC 2 cut(s) 219, 339
Psp124BI GAGCTC 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 220, 253
PspGI CCWGG 2 cut(s) 220, 253
PspN4I GGNNCC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 347
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SacI GAGCTC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 567
Sau3AI GATC 2 cut(s) 55, 242
SchI GAGTC 2 cut(s) 219, 339
ScrFI CCNGG 2 cut(s) 222, 255
SduI GDGCHC 1 cut(s) 575
SetI ASST 8 cut(s) 28, 214, 220, 517, 575, 761, 788, 833
SfaNI GCATC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 347
SfuI TTCGAA 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 78, 87, 414, 618
SseBI AGGCCT 1 cut(s) 249
SsiI CCGC 2 cut(s) 117, 491
SspMI CTAG 2 cut(s) 209, 530
SstI GAGCTC 1 cut(s) 575
StuI AGGCCT 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 220, 253
StyI CCWWGG 2 cut(s) 92, 120
TaaI ACNGT 4 cut(s) 104, 178, 273, 317
TaqI TCGA 5 cut(s) 236, 261, 348, 420, 549
TasI AATT 4 cut(s) 78, 87, 414, 618
TatI WGTACW 1 cut(s) 426
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 4 cut(s) 183, 276, 320, 377
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 8 cut(s) 200, 380, 399, 447, 530, 547, 629, 647
TspRI CASTG 4 cut(s) 183, 276, 320, 377
XagI CCTNNNNNAGG 1 cut(s) 157
XapI RAATTY 1 cut(s) 414
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 347
XspI CTAG 2 cut(s) 209, 530
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.