Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

55327669 .. 55328949

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGAAACAGAAGCCCAAGACTCATGTTGTTGGGGTATCTGCAAGCGTGACCAGATTAATTAAGCAACTAACATTTCCACAGGACAAGATACTCACCGTTGTTTATACATCGGATCACCAAGAAGCATATACCACCAAAGTTTGGTTCATCCCGGTTCTTGATCAGCCTCTGTCTTCTAATTGCTACTATGTTATCAAAGCAAATGGAAGACACAAAGGGAAAGTATGCAGATGTTCTAAAGAGAGGGACATAATGAATTGTTGCTTCAGAGACTTCGTGAGGGACAAGAAACCAACACTTTTGAATCTCAGAAACATATACCAACAGGTTAAGATTCATCGGCACCAAGGAGGTGGTATTTTCACGGAGTCTGTAGCTCCTGATGGTGTTCCTCCTAAATTTCTAAGAAGGAAAGGATGGGAAATCCGCAGCTCAAGTTTGTACCGATGGCAATTAAATGATGCCTTAGGCCTCGATGCTTCCCTCCGATCACGTTTCCCTGACTTCAACTTTCCCATCTCTAAGAAACGTTCAGCTTCTAATGTTGTGGGCAAATGGTACGGTCCGTTTATGTTTGTGAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

196

Amino Acids

22.73

Weight (kDa)

9.99

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	11 - 90	5.4e-29	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	1 cut(s)	430
AclI	AACGTT	1 cut(s)	532
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	2 cut(s)	446, 563
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	307, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	380, 435, 539
AluI	AGCT	3 cut(s)	380, 435, 539
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	401
AseI	ATTAAT	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	88, 110
AvaII	GGWCC	1 cut(s)	566
AxyI	CCTNAGG	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	168, 217
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	4 cut(s)	380, 414, 444, 527
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	454, 469
BpiI	GAAGAC	2 cut(s)	168, 217
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	150, 425
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	263, 299
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	263, 299
BsnI	GGCC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	115, 163, 491
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	3 cut(s)	115, 163, 491
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	100, 566
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	4 cut(s)	311, 407, 469, 525
BstF5I	GGATG	2 cut(s)	150, 425
BstKTI	GATC	3 cut(s)	118, 166, 494
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	3 cut(s)	115, 163, 491
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	2 cut(s)	168, 217
BstXI	CCANNNNNNTGG	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	150, 425
Cac8I	GCNNGC	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	566
CpoI	CGGWCCG	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	445, 562
CspI	CGGWCCG	1 cut(s)	566
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	6 cut(s)	16, 169, 380, 435, 474, 539
CviKI_1	RGCY	6 cut(s)	16, 169, 380, 435, 474, 539
CviQI	GTAC	2 cut(s)	445, 562
DdeI	CTNAG	4 cut(s)	311, 407, 469, 525
DpnI	GATC	3 cut(s)	117, 165, 493
DpnII	GATC	3 cut(s)	115, 163, 491
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	263, 299
FatI	CATG	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	137, 432
Fsp4HI	GCNGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	155
Hin1II	CATG	1 cut(s)	29
HinfI	GANTC	4 cut(s)	22, 307, 337, 371
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	88, 110
Hpy188I	TCNGA	4 cut(s)	115, 272, 314, 491
Hpy188III	TCNNGA	3 cut(s)	161, 280, 383
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	2 cut(s)	100, 566
HpyCH4IV	ACGT	2 cut(s)	496, 532
HpyCH4V	TGCA	2 cut(s)	44, 231
HpyF3I	CTNAG	4 cut(s)	311, 407, 469, 525
HpySE526I	ACGT	2 cut(s)	496, 532
Hsp92II	CATG	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	115, 163, 491
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	6 cut(s)	67, 68, 168, 314, 396, 516
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	2 cut(s)	454, 469
MaeII	ACGT	2 cut(s)	496, 532
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	117, 165, 493
MboI	GATC	3 cut(s)	115, 163, 491
MboII	GAAGA	2 cut(s)	168, 222
MluCI	AATT	5 cut(s)	60, 181, 259, 401, 455
MlyI	GAGTC	2 cut(s)	16, 380
MnlI	CCTC	7 cut(s)	180, 240, 276, 347, 405, 485, 497
MseI	TTAA	4 cut(s)	59, 63, 333, 458
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	155
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	3 cut(s)	115, 163, 491
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	49
PacI	TTAATTAA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	307, 337
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	2 cut(s)	16, 379
PpsI	GAGTC	2 cut(s)	16, 379
PshBI	ATTAAT	1 cut(s)	59
Psp1406I	AACGTT	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	446, 563
RsaNI	GTAC	2 cut(s)	445, 562
Rsr2I	CGGWCCG	1 cut(s)	566
RsrII	CGGWCCG	1 cut(s)	566
SaqAI	TTAA	4 cut(s)	59, 63, 333, 458
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	3 cut(s)	115, 163, 491
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	2 cut(s)	16, 380
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	7 cut(s)	333, 358, 382, 437, 499, 535, 541
SfaNI	GCATC	2 cut(s)	454, 469
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	5 cut(s)	60, 181, 259, 401, 455
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	1 cut(s)	430
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	100, 566
TaiI	ACGT	2 cut(s)	499, 535
TaqI	TCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	60, 181, 259, 401, 455
TfiI	GAWTC	2 cut(s)	307, 337
Tru1I	TTAA	4 cut(s)	59, 63, 333, 458
Tru9I	TTAA	4 cut(s)	59, 63, 333, 458
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	139, 272, 329
TspGWI	ACGGA	2 cut(s)	383, 558
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	566
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.