Rmu_sc0003130.1_g000016

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003130.1
OG0001480
Physical Location & Seq
Reverse (-)
70791 .. 72711
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003130.1_g000016.1.cds

Sequence Viewer

Length: 1383 bp
atggcgttgaggaagggtgctgccggagccgaggctgagatccatcatgcatctgagatccatttcgtgcgtccgagaactagtcgcgaaacggctagtctgtcgggattcagttccagtcgccgacgtgatggtggaaaggagtgtttcgccggagagagagagaggcagaggagagaatcggagatctggttccaatccgcgtcgtgcatcagagatccagttcgtgcgtcggagatcctgtcgtctcccgattcactatcactaccaacgccggaaggtccaaattccggttatcttgtactacacgatgaagaatcagatgaaactacctgtttcggatgttgcgaagatcctcaggtgcaaggcttgcctttccctcagaacaagaatctcacagttgaatattcctcagatgatgatgatgttgccttcattccagttcttgataagcctttatctgccaatacataccatgtgatacgccgggatgggagacacagagggaaagtgtacacaaattcaaaggaagaggacatggcagattgctgttttggcaaaactgttcaagatgtaaaaccaaaaccattggatccatcagacatatatcaacaaattgagataattccaaggaaacaccgcggttactttactgccaaggctgttgcttcagatgggtttcctccttactttttgaggagaaaagattggacagtgaccatgagcacaccccatcattatcaactaggtgaagctccaggactcaacgcttcgaagcgatcaggccttcctggtttcgactttccactgtccaaagattgttctgaggctatggtagttggcaagtggcactgtcctttcttgtttatcaaggaagggggactggagttgaagcaccaaatgaagcactgcatgttctatgaaatgagactggagcaaagatgggagagaattttcgacaagtacaatgaaggaaagagcaacaatgctaatgctgtgtttgtggatgcatttgttcaaagagaggcggtatttattgctggaagagaagcttattccgataatctagacagagttcatatcgtcgatgatttcatgtggtttaagagctctgatggtgggggaggagaaaggagtgtagggttgagcatgaaaattattgagagaatgaagtgggagcaagaaagagttggatgggttggtggggagaaaacaaaagtgcgagtggagaaaaccgaaaagtttgggggaactgatggttggaatagattttcttgttatgtgttggtggagaggtttgtgttgaagagaatggatggaagcttagcactattggcatatgatttcaagcacactcaccagattaggtgcaaatgggaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

460

Amino Acids

52.53

Weight (kDa)

6.59

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 87, 203, 642
AciI CCGC 4 cut(s) 201, 640, 642, 1028
AclWI GGATC 7 cut(s) 34, 52, 212, 232, 347, 587, 600
AcsI RAATTY 3 cut(s) 286, 520, 951
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 3 cut(s) 303, 515, 965
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 7 cut(s) 404, 525, 569, 892, 1019, 1306, 1348
AhlI ACTAGT 1 cut(s) 80
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 2 cut(s) 757, 790
AjuI GAANNNNNNNTTGG 2 cut(s) 1243, 1275
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 4 cut(s) 755, 1052, 1110, 1323
AluI AGCT 4 cut(s) 755, 1052, 1110, 1323
Alw21I GWGCWC 2 cut(s) 728, 1112
Alw26I GTCTC 3 cut(s) 252, 490, 922
AlwI GGATC 7 cut(s) 34, 52, 212, 232, 347, 587, 600
AoxI GGCC 1 cut(s) 784
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 286, 520, 951
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 761, 1349
AsuII TTCGAA 1 cut(s) 773
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 357
BamHI GGATCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 1112
Bbv12I GWGCWC 2 cut(s) 728, 1112
BbvI GCAGC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 2 cut(s) 759, 792
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 252, 490, 922
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 4 cut(s) 81, 96, 746, 1067
BglII AGATCT 1 cut(s) 186
BisI GCNGC 1 cut(s) 21
BlpI GCTNAGC 1 cut(s) 1324
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 3 cut(s) 488, 759, 792
Bme18I GGWCC 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 3 cut(s) 28, 194, 594
BmrFI CCNGG 3 cut(s) 488, 759, 792
BmsI GCATC 3 cut(s) 59, 219, 997
BpmI CTGGAG 3 cut(s) 741, 905, 953
Bpu1102I GCTNAGC 1 cut(s) 1324
Bpu14I TTCGAA 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 488
BsaJI CCNNGG 4 cut(s) 30, 629, 640, 657
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 5 cut(s) 117, 221, 440, 888, 936
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 759, 792
BseDI CCNNGG 4 cut(s) 30, 629, 640, 657
BseGI GGATG 5 cut(s) 347, 496, 1012, 1199, 1321
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 6 cut(s) 27, 45, 371, 395, 426, 816
BseNI ACTGG 5 cut(s) 117, 221, 440, 888, 936
BseRI GAGGAG 3 cut(s) 187, 712, 1140
BseXI GCAGC 1 cut(s) 7
Bsh1236I CGCG 3 cut(s) 87, 203, 642
BshFI GGCC 1 cut(s) 786
BsiHKAI GWGCWC 2 cut(s) 728, 1112
BsiSI CCGG 5 cut(s) 24, 153, 275, 291, 487
BslFI GGGAC 1 cut(s) 894
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 3 cut(s) 252, 490, 922
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 894
BsnI GGCC 1 cut(s) 786
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 728, 1112
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
Bsp1720I GCTNAGC 1 cut(s) 1324
Bsp68I TCGCGA 1 cut(s) 87
BspACI CCGC 4 cut(s) 201, 640, 642, 1028
BspANI GGCC 1 cut(s) 786
BspCNI CTCAG 6 cut(s) 28, 46, 370, 394, 425, 817
BspFNI CGCG 3 cut(s) 87, 203, 642
BspLI GGNNCC 3 cut(s) 28, 194, 594
BspPI GGATC 7 cut(s) 34, 52, 212, 232, 347, 587, 600
BspT104I TTCGAA 1 cut(s) 773
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 5 cut(s) 117, 221, 440, 888, 936
BssECI CCNNGG 4 cut(s) 30, 629, 640, 657
BssMI GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
BssT1I CCWWGG 2 cut(s) 629, 657
Bst2UI CCWGG 2 cut(s) 759, 792
Bst4CI ACNGT 5 cut(s) 400, 565, 715, 810, 854
Bst6I CTCTTC 3 cut(s) 525, 1039, 1301
BstAPI GCANNNNNTGC 1 cut(s) 370
BstAUI TGTACA 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 773
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 7 cut(s) 36, 54, 357, 381, 412, 825, 1324
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 5 cut(s) 347, 496, 1012, 1199, 1321
BstFNI CGCG 3 cut(s) 87, 203, 642
BstKTI GATC 8 cut(s) 42, 60, 189, 220, 240, 355, 595, 782
BstMAI GTCTC 3 cut(s) 252, 490, 922
BstMBI GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
BstMWI GCNNNNNNNGC 4 cut(s) 26, 370, 555, 1334
BstNI CCWGG 2 cut(s) 759, 792
BstNSI RCATGY 1 cut(s) 916
BstSCI CCNGG 3 cut(s) 486, 757, 790
BstUI CGCG 3 cut(s) 87, 203, 642
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 7 cut(s) 39, 57, 186, 217, 237, 352, 592
BstYI RGATCY 7 cut(s) 39, 57, 186, 217, 237, 352, 592
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 786
BtgI CCRYGG 1 cut(s) 640
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 5 cut(s) 347, 496, 1012, 1199, 1321
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 4 cut(s) 720, 806, 850, 907
BtuMI TCGCGA 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 281
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 3 cut(s) 59, 192, 219
Csp6I GTAC 3 cut(s) 302, 514, 964
CviAII CATG 7 cut(s) 47, 476, 538, 721, 913, 1096, 1150
CviQI GTAC 3 cut(s) 302, 514, 964
DdeI CTNAG 7 cut(s) 36, 54, 357, 381, 412, 825, 1324
DpnI GATC 8 cut(s) 41, 59, 188, 219, 239, 354, 594, 781
DpnII GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
Eam1104I CTCTTC 3 cut(s) 525, 1039, 1301
EarI CTCTTC 3 cut(s) 525, 1039, 1301
Ecl136II GAGCTC 1 cut(s) 1110
Eco130I CCWWGG 2 cut(s) 629, 657
Eco147I AGGCCT 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 1112
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 757, 790
EcoT14I CCWWGG 2 cut(s) 629, 657
EcoT22I ATGCAT 2 cut(s) 52, 1012
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 2 cut(s) 629, 657
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 7 cut(s) 50, 479, 541, 724, 916, 1099, 1153
FalI AAGNNNNNCTT 2 cut(s) 1036, 1068
FaqI GGGAC 1 cut(s) 894
FatI CATG 7 cut(s) 46, 475, 537, 720, 912, 1095, 1149
FauNDI CATATG 1 cut(s) 1339
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 5 cut(s) 354, 503, 1019, 1206, 1328
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 4 cut(s) 81, 96, 746, 1067
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 3 cut(s) 741, 905, 953
HaeIII GGCC 1 cut(s) 786
HapII CCGG 5 cut(s) 24, 153, 275, 291, 487
HgaI GACGC 3 cut(s) 59, 192, 219
Hin1II CATG 7 cut(s) 50, 479, 541, 724, 916, 1099, 1153
HindIII AAGCTT 2 cut(s) 1050, 1321
HinfI GANTC 6 cut(s) 108, 179, 254, 317, 391, 762
HpaII CCGG 5 cut(s) 24, 153, 275, 291, 487
HphI GGTGA 2 cut(s) 761, 1349
Hpy166II GTNNAC 2 cut(s) 514, 516
Hpy188III TCNNGA 6 cut(s) 86, 105, 251, 446, 569, 1067
Hpy8I GTNNAC 2 cut(s) 514, 516
Hpy99I CGWCG 4 cut(s) 129, 208, 235, 1088
HpyAV CCTTC 6 cut(s) 7, 272, 442, 797, 869, 965
HpyCH4III ACNGT 5 cut(s) 400, 565, 715, 810, 854
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 6 cut(s) 50, 210, 364, 912, 1010, 1371
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 370, 555, 1334
HpyF3I CTNAG 7 cut(s) 36, 54, 357, 381, 412, 825, 1324
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 7 cut(s) 50, 479, 541, 724, 916, 1099, 1153
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
LmnI GCTCC 4 cut(s) 26, 760, 934, 1177
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 3 cut(s) 59, 219, 997
MaeI CTAG 4 cut(s) 81, 96, 746, 1067
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 644, 715
MalI GATC 8 cut(s) 41, 59, 188, 219, 239, 354, 594, 781
MboI GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
MboII GAAGA 5 cut(s) 326, 362, 542, 1056, 1318
MflI RGATCY 7 cut(s) 39, 57, 186, 217, 237, 352, 592
MhlI GDGCHC 2 cut(s) 728, 1112
MluCI AATT 6 cut(s) 286, 520, 615, 624, 951, 1155
MlyI GAGTC 1 cut(s) 756
MmeI TCCRAC 3 cut(s) 213, 1171, 1241
Mph1103I ATGCAT 2 cut(s) 52, 1012
MseI TTAA 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 5 cut(s) 24, 153, 275, 291, 487
MspR9I CCNGG 3 cut(s) 488, 759, 792
MvaI CCWGG 2 cut(s) 759, 792
MvnI CGCG 3 cut(s) 87, 203, 642
MwoI GCNNNNNNNGC 4 cut(s) 26, 370, 555, 1334
NciI CCSGG 1 cut(s) 488
NdeI CATATG 1 cut(s) 1339
NdeII GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
NlaIII CATG 7 cut(s) 50, 479, 541, 724, 916, 1099, 1153
NlaIV GGNNCC 3 cut(s) 28, 194, 594
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 715
NruI TCGCGA 1 cut(s) 87
NsiI ATGCAT 2 cut(s) 52, 1012
NspI RCATGY 1 cut(s) 916
NspV TTCGAA 1 cut(s) 773
PceI AGGCCT 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 5 cut(s) 108, 179, 254, 317, 391
PfoI TCCNGGA 1 cut(s) 757
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 756
PpsI GAGTC 1 cut(s) 756
Psp124BI GAGCTC 1 cut(s) 1112
Psp6I CCWGG 2 cut(s) 757, 790
PspGI CCWGG 2 cut(s) 757, 790
PspN4I GGNNCC 3 cut(s) 28, 194, 594
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 7 cut(s) 39, 57, 186, 217, 237, 352, 592
RruI TCGCGA 1 cut(s) 87
RsaI GTAC 3 cut(s) 303, 515, 965
RsaNI GTAC 3 cut(s) 302, 514, 964
SacI GAGCTC 1 cut(s) 1112
SacII CCGCGG 1 cut(s) 643
SaqAI TTAA 1 cut(s) 1104
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 8 cut(s) 39, 57, 186, 217, 237, 352, 592, 779
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 1 cut(s) 756
ScrFI CCNGG 3 cut(s) 488, 759, 792
SduI GDGCHC 2 cut(s) 728, 1112
SfaNI GCATC 3 cut(s) 59, 219, 997
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 773
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 1 cut(s) 281
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 6 cut(s) 286, 520, 615, 624, 951, 1155
SseBI AGGCCT 1 cut(s) 786
SsiI CCGC 4 cut(s) 201, 640, 642, 1028
SspI AATATT 1 cut(s) 407
SspMI CTAG 4 cut(s) 81, 96, 746, 1067
SstI GAGCTC 1 cut(s) 1112
StuI AGGCCT 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 486, 757, 790
StyI CCWWGG 2 cut(s) 629, 657
TaaI ACNGT 5 cut(s) 400, 565, 715, 810, 854
TaiI ACGT 1 cut(s) 130
TaqI TCGA 4 cut(s) 773, 798, 957, 1086
TasI AATT 6 cut(s) 286, 520, 615, 624, 951, 1155
TatI WGTACW 3 cut(s) 301, 513, 963
TfiI GAWTC 5 cut(s) 108, 179, 254, 317, 391
Tru1I TTAA 1 cut(s) 1104
Tru9I TTAA 1 cut(s) 1104
TscAI CASTG 4 cut(s) 720, 813, 857, 914
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 715
TspRI CASTG 4 cut(s) 720, 813, 857, 914
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 3 cut(s) 286, 520, 951
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 1 cut(s) 916
XspI CTAG 4 cut(s) 81, 96, 746, 1067
Zsp2I ATGCAT 2 cut(s) 52, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.