FvH4_4g28542

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001480
Physical Location & Seq
Reverse (-)
29148579 .. 29149883
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28542.t1

Sequence Viewer

Length: 1206 bp
ATGTATGTGACAAGGCCTCTGTCTATGTATAGAAGGTCTCCTGAATCACTGTCAGCGCCAACCCCGGAAGGGCCAAATTCCGGTTATCTTGTGCTCGATGATGAAGAATCGGATGATTATACGTGTTTTGGATGCTGCGCAGATACCAGGGTGGAAGATTTGCCTTTCCCTCAGAACAAGGATCTCTCAGTTGGATATTCCTCAGATAGTGATGAGGTTGCCTTCATTCCAGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGGTGTGCAGGGATGGGAAACACAGAGGGGAAGTGTGTACAAATTCAAAGAAAGAAAACATGGTAGATATTGGCTGGTTTGGCAGAACTATTGGCAAAACTGTCATTGATGTAGAACCAAAGCCATTTGACCCATCAGACATATATCAACAAATTGAGATAATACCAAAGCAGCGTGGTTACTTTACTGCCAACGCTGTTGCTTCAGATGGGATTCCTCCTTCTTTTTTGAGGAGAAAAACTTGGCCAGTCCATATGGCCACACTCCCTCTTCATTACCAACCCCTTCATTACCAACTAAGCAATGCTCCAGGACTCGACGCTTCAAAGCGATCCGGCCTTCCTGGATTCAACTTACCGTTGTCTCAAGATTTCTCTGAGGCTATGGTAGTTGGCAAGTGGCATTGTCCTTTCTTGTTTATCAAGGAAGAGGGACTGAAGTTGAAGCACCAAATGAAGCAATGCATGTTCTATGAAATGAGACTTGAGCAACGATGGGAGAGAATTTTTGACAAGTACAATGAGGGAACAAGTAGCAATGCTAATGCTGTGTTTGTGGATACATTTGTTCAAAGAGAGGCGGTATTTATAGCTGGAAATGAAGCTTTTTCGGATAATCTTGACAGATTTAATGTCGCCGATGATGGTTTTATGTGGTTTAAGAGTTCTGATGGTGCGGGAGGAAAAATGAGTGTAGGGTTGAGCATGAAAATTGTGGAGAGAATGAAATGGGAGCAAGGAAGAGTTGGATGGGTTGATGGGGAGAAGAGAAAAGTGAGAGTGGAGAGAAGTGAAAAGTTTGGAGGAACTGGAGGTTGGAATAGATTTGGTTGTTATGTGTTGGTGGAGAGGTTTGTGTTGAAGAGAATGGATGGAAGCTTAGCACTACTGACATATGATTTCAAGCACACTCATCAGATTAGGTGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

402

Amino Acids

45.75

Weight (kDa)

6.34

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 112 1e-31 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 139
AciI CCGC 2 cut(s) 848, 944
AclWI GGATC 2 cut(s) 189, 594
AcoI YGGCCR 2 cut(s) 512, 525
AcsI RAATTY 3 cut(s) 76, 310, 771
AcuI CTGAAG 2 cut(s) 456, 725
AfaI GTAC 2 cut(s) 307, 785
AfiI CCNNNNNNNGG 2 cut(s) 69, 80
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 7 cut(s) 315, 594, 619, 712, 839, 1129, 1171
AjnI CCWGG 3 cut(s) 146, 577, 610
AjuI GAANNNNNNNTTGG 2 cut(s) 1066, 1098
AluBI AGCT 3 cut(s) 860, 872, 1146
AluI AGCT 3 cut(s) 860, 872, 1146
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 42, 636, 742
AlwI GGATC 2 cut(s) 189, 594
AoxI GGCC 5 cut(s) 14, 71, 512, 525, 604
ApeKI GCWGC 2 cut(s) 135, 439
ApoI RAATTY 3 cut(s) 76, 310, 771
AspLEI GCGC 2 cut(s) 58, 140
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 65
BaeI ACNNNNGTAYC 4 cut(s) 135, 168, 819, 852
BalI TGGCCA 2 cut(s) 514, 527
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 122, 451
BccI CCATC 9 cut(s) 275, 409, 470, 756, 905, 932, 1011, 1019, 1133
BciT130I CCWGG 3 cut(s) 148, 579, 612
BciVI GTATCC 1 cut(s) 820
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 42, 636, 742
BfoI RGCGCY 1 cut(s) 59
BfuI GTATCC 1 cut(s) 820
BisI GCNGC 2 cut(s) 136, 440
BlpI GCTNAGC 1 cut(s) 1147
BlsI GCNGC 2 cut(s) 137, 441
Bme1390I CCNGG 4 cut(s) 65, 148, 579, 612
BmgT120I GGNCC 1 cut(s) 71
BmrFI CCNGG 4 cut(s) 65, 148, 579, 612
BmsI GCATC 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 561, 1098
Bpu1102I GCTNAGC 1 cut(s) 1147
BpuEI CTTGAG 2 cut(s) 618, 773
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 63, 147
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 80
Bse1I ACTGG 3 cut(s) 230, 515, 1081
Bse3DI GCAATG 3 cut(s) 577, 734, 811
BseBI CCWGG 3 cut(s) 148, 579, 612
BseDI CCNNGG 2 cut(s) 63, 147
BseGI GGATG 5 cut(s) 118, 137, 286, 1022, 1144
BseLI CCNNNNNNNGG 2 cut(s) 69, 80
BseMI GCAATG 3 cut(s) 577, 734, 811
BseMII CTCAG 4 cut(s) 185, 201, 216, 636
BseNI ACTGG 3 cut(s) 230, 515, 1081
BseRI GAGGAG 1 cut(s) 514
BseXI GCAGC 2 cut(s) 122, 451
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 5 cut(s) 16, 73, 514, 527, 606
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 65, 81, 603
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 69, 80
BsmAI GTCTC 3 cut(s) 42, 636, 742
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 5 cut(s) 16, 73, 514, 527, 606
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 2 cut(s) 181, 599
Bsp1720I GCTNAGC 1 cut(s) 1147
BspACI CCGC 2 cut(s) 848, 944
BspANI GGCC 5 cut(s) 16, 73, 514, 527, 606
BspCNI CTCAG 4 cut(s) 184, 200, 215, 637
BspPI GGATC 2 cut(s) 189, 594
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 3 cut(s) 577, 734, 811
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 3 cut(s) 230, 515, 1081
BssECI CCNNGG 2 cut(s) 63, 147
BssMI GATC 2 cut(s) 181, 599
Bst2UI CCWGG 3 cut(s) 148, 579, 612
Bst4CI ACNGT 3 cut(s) 51, 370, 627
Bst6I CTCTTC 5 cut(s) 543, 690, 1003, 1028, 1124
BstAUI TGTACA 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 171, 187, 202, 566, 645, 1147
BstF5I GGATG 5 cut(s) 118, 137, 286, 1022, 1144
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 2 cut(s) 58, 140
BstKTI GATC 2 cut(s) 184, 602
BstMAI GTCTC 3 cut(s) 42, 636, 742
BstMBI GATC 2 cut(s) 181, 599
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 3 cut(s) 148, 579, 612
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 4 cut(s) 63, 146, 577, 610
BstV1I GCAGC 2 cut(s) 122, 451
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 5 cut(s) 16, 73, 514, 527, 606
BtsCI GGATG 5 cut(s) 118, 137, 286, 1022, 1144
BtsIMutI CAGTG 1 cut(s) 47
CfoI GCGC 2 cut(s) 58, 140
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 306, 784
CviAII CATG 4 cut(s) 266, 328, 733, 973
CviQI GTAC 2 cut(s) 306, 784
DdeI CTNAG 6 cut(s) 171, 187, 202, 566, 645, 1147
DpnI GATC 2 cut(s) 183, 601
DpnII GATC 2 cut(s) 181, 599
EaeI YGGCCR 2 cut(s) 512, 525
Eam1104I CTCTTC 5 cut(s) 543, 690, 1003, 1028, 1124
EarI CTCTTC 5 cut(s) 543, 690, 1003, 1028, 1124
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 456, 725
EcoRII CCWGG 3 cut(s) 146, 577, 610
EcoT22I ATGCAT 1 cut(s) 734
FaeI CATG 4 cut(s) 269, 331, 736, 976
FaqI GGGAC 1 cut(s) 714
FatI CATG 4 cut(s) 265, 327, 732, 972
FauI CCCGC 1 cut(s) 937
FauNDI CATATG 2 cut(s) 522, 1162
Fnu4HI GCNGC 2 cut(s) 136, 440
FokI GGATG 5 cut(s) 125, 144, 293, 1029, 1151
Fsp4HI GCNGC 2 cut(s) 136, 440
FspI TGCGCA 1 cut(s) 139
GlaI GCGC 2 cut(s) 57, 139
GluI GCNGC 2 cut(s) 136, 440
GsuI CTGGAG 2 cut(s) 561, 1098
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 5 cut(s) 16, 73, 514, 527, 606
HapII CCGG 3 cut(s) 65, 81, 603
HgaI GACGC 1 cut(s) 596
HhaI GCGC 2 cut(s) 58, 140
Hin1II CATG 4 cut(s) 269, 331, 736, 976
Hin6I GCGC 2 cut(s) 56, 138
HinP1I GCGC 2 cut(s) 56, 138
HindIII AAGCTT 2 cut(s) 870, 1144
HinfI GANTC 5 cut(s) 44, 107, 481, 582, 615
HpaII CCGG 3 cut(s) 65, 81, 603
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 9 cut(s) 112, 174, 205, 406, 475, 646, 880, 937, 1185
Hpy188III TCNNGA 4 cut(s) 41, 236, 635, 887
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 6 cut(s) 27, 62, 232, 498, 563, 617
HpyCH4III ACNGT 3 cut(s) 51, 370, 627
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 276, 732, 1194
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 6 cut(s) 171, 187, 202, 566, 645, 1147
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 4 cut(s) 269, 331, 736, 976
HspAI GCGC 2 cut(s) 56, 138
Kzo9I GATC 2 cut(s) 181, 599
LmnI GCTCC 2 cut(s) 580, 1000
Lsp1109I GCAGC 2 cut(s) 122, 451
LweI GCATC 1 cut(s) 122
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 7, 446
MalI GATC 2 cut(s) 183, 601
MboI GATC 2 cut(s) 181, 599
MboII GAAGA 7 cut(s) 116, 167, 530, 707, 1020, 1045, 1141
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 2 cut(s) 514, 527
MluCI AATT 5 cut(s) 76, 310, 420, 771, 978
MluNI TGGCCA 2 cut(s) 514, 527
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 3 cut(s) 172, 994, 1064
Mox20I TGGCCA 2 cut(s) 514, 527
Mph1103I ATGCAT 1 cut(s) 734
MscI TGGCCA 2 cut(s) 514, 527
MseI TTAA 2 cut(s) 897, 927
Msp20I TGGCCA 2 cut(s) 514, 527
MspI CCGG 3 cut(s) 65, 81, 603
MspR9I CCNGG 4 cut(s) 65, 148, 579, 612
MvaI CCWGG 3 cut(s) 148, 579, 612
MwoI GCNNNNNNNGC 1 cut(s) 348
NciI CCSGG 1 cut(s) 65
NdeI CATATG 2 cut(s) 522, 1162
NdeII GATC 2 cut(s) 181, 599
NlaIII CATG 4 cut(s) 269, 331, 736, 976
NmuCI GTSAC 1 cut(s) 7
NsbI TGCGCA 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 734
NspI RCATGY 1 cut(s) 736
PceI AGGCCT 1 cut(s) 16
PfeI GAWTC 4 cut(s) 44, 107, 481, 615
PfoI TCCNGGA 2 cut(s) 577, 610
PkrI GCNGC 2 cut(s) 137, 441
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 3 cut(s) 146, 577, 610
PspGI CCWGG 3 cut(s) 146, 577, 610
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 307, 785
RsaNI GTAC 2 cut(s) 306, 784
SaqAI TTAA 2 cut(s) 897, 927
SatI GCNGC 2 cut(s) 136, 440
Sau3AI GATC 2 cut(s) 181, 599
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 4 cut(s) 65, 148, 579, 612
SduI GDGCHC 1 cut(s) 96
SetI ASST 9 cut(s) 38, 125, 219, 862, 874, 1084, 1121, 1148, 1193
SfaNI GCATC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 633, 752
SmoI CTYRAG 2 cut(s) 633, 752
Sse9I AATT 5 cut(s) 76, 310, 420, 771, 978
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 2 cut(s) 848, 944
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 4 cut(s) 63, 146, 577, 610
TaaI ACNGT 3 cut(s) 51, 370, 627
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 96, 585
TasI AATT 5 cut(s) 76, 310, 420, 771, 978
TatI WGTACW 2 cut(s) 305, 783
TfiI GAWTC 4 cut(s) 44, 107, 481, 615
Tru1I TTAA 2 cut(s) 897, 927
Tru9I TTAA 2 cut(s) 897, 927
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 135, 439
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 9 cut(s) 117, 214, 530, 545, 737, 756, 882, 989, 1007
TspRI CASTG 1 cut(s) 54
XapI RAATTY 3 cut(s) 76, 310, 771
XceI RCATGY 1 cut(s) 736
Zsp2I ATGCAT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.