pycom09g00720

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001480
Physical Location & Seq
Forward (+)
542707 .. 544017
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00720.2

Sequence Viewer

Length: 1152 bp
ATGTACAGGAAATCGCCAAGCACCCTTTCCCTTCATCCACCCGATGCTCCACATTCAGGTTTCTTGGTGATTACAGATGAAGATGCAGAAGCACACGACGCGTCTTGCTGGGGCCTATGCAAGCGCAGAAAGGTATCGAAACTGCCGTTCCCACAGGACAAGATACTGACCATAGTTTACACGTCGGAGTTCCAAGAGGCAACGAAGACTAAGGTCTGGTTCATCCCTGTTCTTGATCAGCCTCTATCGTCTCATTGCTACTATGTCATCAAAGCAAGTGGCAGGCACAAAGGGAAAGCTTACAGATGTGCTAGAGAGAGGGACATCGTGAAGTGCTGCTTTAACGACTTCTTGGGAGACAAGAAACCAAGGGTTTTAAATTTTAGAGACATATACCAACAAGTTAAGATTCATCGCTTCGAAGGTGGTGGGTTTTTCGCAAGGGCTGTAGCTCCCGACGGCGTTCCCCCAAAATTCCTCAATAAAAAAGGATGGAAAGTTCGCAGCTCGACTATGTATCGTTCACAACTAGGTGAAGCTTTAGGCCTTGACGCCTCGCTCCGTTCACGTCTTCCGGACTTCAATTTTACCGTCTTTCAAAAGCGCTCGCGTACTAGCACTGTGGGGAGCTGGTACTGTCCATTTGTGTTTGTAAGAGAGAGAGCAACCATAAGACAGCTGATGAAGAAATCGAAGTACTACAGGGTGACTTTGGAGCAATGGTGGGAAGAGATATATTCTTGTGGGAACGTTAACCGTGAAGGGAACGTTGTGAACGTGAGCGTAGATGTGCAAAGGGAAGTGGCTATGGTATCTGCCATGCAAGCCGTGAAGGATGATAGGAACGGACGAACAGGGTTCACCTGGTACAAAGCCCATAACCCATACAGCAAGAAAGTGGTGAGTGTAGGTTTGAGCTCGGCAATTGTTCAGAATATGAGATGGGTTTTGGAGGCAGGAGGGTGGGTAAGTGGGGGTGATGAAATGGATGTGAGAGTAGAGAAGGCAGAAGAGATTACAAGTGCAACTCGGTGGAGGAAGTTTGGGTGTTATGTGTTGGTGGAGAGCTTCTCTTTGAAGAGAATGGATGGAAGCTTTGTATGGAGATCCGATTTTAGGCACACGGATAAGATTCGATGTAAATGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

384

Amino Acids

44.25

Weight (kDa)

9.64

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 101, 610
AccIII TCCGGA 1 cut(s) 574
AclI AACGTT 2 cut(s) 750, 768
AclWI GGATC 1 cut(s) 1101
AcsI RAATTY 2 cut(s) 379, 473
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 5 cut(s) 5, 613, 635, 698, 869
AfeI AGCGCT 1 cut(s) 605
AfiI CCNNNNNNNGG 2 cut(s) 56, 1116
AflIII ACRYGT 2 cut(s) 99, 180
AgsI TTSAA 3 cut(s) 583, 599, 1078
AjiI CACGTC 2 cut(s) 183, 569
AjnI CCWGG 1 cut(s) 863
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 9 cut(s) 299, 452, 507, 539, 630, 679, 918, 1068, 1095
AluI AGCT 9 cut(s) 299, 452, 507, 539, 630, 679, 918, 1068, 1095
Alw21I GWGCWC 1 cut(s) 920
Alw26I GTCTC 3 cut(s) 255, 351, 381
AlwI GGATC 1 cut(s) 1101
Aor13HI TCCGGA 1 cut(s) 574
Aor51HI AGCGCT 1 cut(s) 605
AoxI GGCC 2 cut(s) 112, 544
ApeKI GCWGC 2 cut(s) 336, 504
ApoI RAATTY 2 cut(s) 379, 473
AspLEI GCGC 2 cut(s) 126, 606
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 6 cut(s) 79, 545, 718, 853, 913, 989
AsuII TTCGAA 1 cut(s) 420
BanII GRGCYC 1 cut(s) 920
BbsI GAAGAC 2 cut(s) 212, 563
Bbv12I GWGCWC 1 cut(s) 920
BbvI GCAGC 2 cut(s) 323, 516
BccI CCATC 3 cut(s) 486, 936, 1082
BceAI ACGGC 3 cut(s) 130, 475, 812
BciT130I CCWGG 1 cut(s) 865
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 3 cut(s) 255, 351, 381
BfaI CTAG 3 cut(s) 312, 530, 615
BfmI CTRYAG 2 cut(s) 447, 700
BfoI RGCGCY 1 cut(s) 607
BisI GCNGC 2 cut(s) 337, 505
BlsI GCNGC 2 cut(s) 338, 506
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 1 cut(s) 865
BmgBI CACGTC 2 cut(s) 183, 569
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 2 cut(s) 34, 73
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 212, 563
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
Bpu14I TTCGAA 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 4 cut(s) 707, 737, 951, 981
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 1116
Bse3DI GCAATG 2 cut(s) 253, 725
BseAI TCCGGA 1 cut(s) 574
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 6 cut(s) 34, 222, 497, 841, 994, 1093
BseLI CCNNNNNNNGG 2 cut(s) 56, 1116
BseMI GCAATG 2 cut(s) 253, 725
BseXI GCAGC 2 cut(s) 323, 516
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 101, 610
BshFI GGCC 2 cut(s) 114, 546
BsiHKAI GWGCWC 1 cut(s) 920
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 56, 1116
BsmAI GTCTC 3 cut(s) 255, 351, 381
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 114, 546
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 920
Bsp13I TCCGGA 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 235, 1106
BspANI GGCC 2 cut(s) 114, 546
BspEI TCCGGA 1 cut(s) 574
BspFNI CGCG 2 cut(s) 101, 610
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 1101
BspT104I TTCGAA 1 cut(s) 420
BsrDI GCAATG 2 cut(s) 253, 725
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 235, 1106
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 4 cut(s) 592, 622, 638, 758
Bst6I CTCTTC 3 cut(s) 723, 1005, 1073
BstACI GRCGYC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 122, 284, 608, 825
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 6 cut(s) 34, 222, 497, 841, 994, 1093
BstFNI CGCG 2 cut(s) 101, 610
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 2 cut(s) 126, 606
BstKTI GATC 2 cut(s) 238, 1109
BstMAI GTCTC 3 cut(s) 255, 351, 381
BstMBI GATC 2 cut(s) 235, 1106
BstMWI GCNNNNNNNGC 2 cut(s) 98, 824
BstNI CCWGG 1 cut(s) 865
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 863
BstSFI CTRYAG 2 cut(s) 447, 700
BstUI CGCG 2 cut(s) 101, 610
BstV1I GCAGC 2 cut(s) 323, 516
BstV2I GAAGAC 2 cut(s) 212, 563
BstX2I RGATCY 1 cut(s) 1106
BstYI RGATCY 1 cut(s) 1106
BsuRI GGCC 2 cut(s) 114, 546
BtgZI GCGATG 1 cut(s) 398
BtrI CACGTC 2 cut(s) 183, 569
BtsCI GGATG 6 cut(s) 34, 222, 497, 841, 994, 1093
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 4 cut(s) 122, 284, 608, 825
CfoI GCGC 2 cut(s) 126, 606
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 3 cut(s) 90, 107, 560
CsiI ACCWGGT 1 cut(s) 863
Csp6I GTAC 5 cut(s) 4, 612, 634, 697, 868
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 1 cut(s) 820
CviQI GTAC 5 cut(s) 4, 612, 634, 697, 868
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 237, 1108
DpnII GATC 2 cut(s) 235, 1106
DraI TTTAAA 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 723, 1005, 1073
EarI CTCTTC 3 cut(s) 723, 1005, 1073
Ecl136II GAGCTC 1 cut(s) 918
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 920
Eco47III AGCGCT 1 cut(s) 605
Eco53kI GAGCTC 1 cut(s) 918
EcoICRI GAGCTC 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 920
ErhI CCWWGG 1 cut(s) 368
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 1 cut(s) 823
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 819
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 337, 505
FokI GGATG 6 cut(s) 21, 209, 504, 848, 1001, 1100
FriOI GRGCYC 1 cut(s) 920
Fsp4HI GCNGC 2 cut(s) 337, 505
FspBI CTAG 3 cut(s) 312, 530, 615
GlaI GCGC 2 cut(s) 125, 605
GluI GCNGC 2 cut(s) 337, 505
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 607
HaeIII GGCC 2 cut(s) 114, 546
HapII CCGG 1 cut(s) 575
HgaI GACGC 3 cut(s) 90, 107, 560
HhaI GCGC 2 cut(s) 126, 606
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 1 cut(s) 823
Hin6I GCGC 2 cut(s) 124, 604
HinP1I GCGC 2 cut(s) 124, 604
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 3 cut(s) 297, 537, 1093
HinfI GANTC 2 cut(s) 409, 1132
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 1 cut(s) 575
HphI GGTGA 6 cut(s) 79, 545, 718, 853, 913, 989
Hpy166II GTNNAC 6 cut(s) 178, 524, 566, 754, 775, 861
Hpy188I TCNGA 3 cut(s) 187, 933, 1111
Hpy188III TCNNGA 4 cut(s) 233, 328, 455, 575
Hpy8I GTNNAC 6 cut(s) 178, 524, 566, 754, 775, 861
Hpy99I CGWCG 3 cut(s) 101, 187, 461
HpyAV CCTTC 5 cut(s) 41, 416, 755, 826, 997
HpyCH4III ACNGT 4 cut(s) 592, 622, 638, 758
HpyCH4IV ACGT 5 cut(s) 182, 568, 750, 768, 777
HpyCH4V TGCA 5 cut(s) 86, 120, 793, 823, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 824
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 5 cut(s) 182, 568, 750, 768, 777
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 1 cut(s) 823
HspAI GCGC 2 cut(s) 124, 604
Kpn2I TCCGGA 1 cut(s) 574
Ksp22I TGATCA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 2 cut(s) 235, 1106
LmnI GCTCC 5 cut(s) 52, 457, 564, 627, 715
Lsp1109I GCAGC 2 cut(s) 323, 516
LweI GCATC 2 cut(s) 34, 73
MabI ACCWGGT 1 cut(s) 863
MaeI CTAG 3 cut(s) 312, 530, 615
MaeII ACGT 5 cut(s) 182, 568, 750, 768, 777
MaeIII GTNAC 1 cut(s) 706
MalI GATC 2 cut(s) 237, 1108
MboI GATC 2 cut(s) 235, 1106
MboII GAAGA 7 cut(s) 92, 217, 563, 697, 740, 1022, 1090
MfeI CAATTG 1 cut(s) 924
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 1 cut(s) 920
MluCI AATT 4 cut(s) 379, 473, 583, 924
MluI ACGCGT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 190, 252, 312, 488, 565, 946, 953, 1029
MroI TCCGGA 1 cut(s) 574
MseI TTAA 4 cut(s) 342, 377, 405, 753
MspA1I CMGCKG 1 cut(s) 679
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 1 cut(s) 924
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 2 cut(s) 101, 610
MwoI GCNNNNNNNGC 2 cut(s) 98, 824
NdeII GATC 2 cut(s) 235, 1106
NlaIII CATG 1 cut(s) 823
NlaIV GGNNCC 1 cut(s) 113
NmeAIII GCCGAG 1 cut(s) 899
NmuCI GTSAC 1 cut(s) 706
NspV TTCGAA 1 cut(s) 420
PceI AGGCCT 1 cut(s) 546
PcsI WCGNNNNNNNCGW 2 cut(s) 143, 774
PfeI GAWTC 2 cut(s) 409, 1132
PkrI GCNGC 2 cut(s) 338, 506
PshAI GACNNNNGTC 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 920
Psp1406I AACGTT 2 cut(s) 750, 768
Psp6I CCWGG 1 cut(s) 863
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 1106
PvuII CAGCTG 1 cut(s) 679
RsaI GTAC 5 cut(s) 5, 613, 635, 698, 869
RsaNI GTAC 5 cut(s) 4, 612, 634, 697, 868
SacI GAGCTC 1 cut(s) 920
SaqAI TTAA 4 cut(s) 342, 377, 405, 753
SatI GCNGC 2 cut(s) 337, 505
Sau3AI GATC 2 cut(s) 235, 1106
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 1 cut(s) 920
SexAI ACCWGGT 1 cut(s) 863
SfaNI GCATC 2 cut(s) 34, 73
SfcI CTRYAG 2 cut(s) 447, 700
SfuI TTCGAA 1 cut(s) 420
Sse9I AATT 4 cut(s) 379, 473, 583, 924
SseBI AGGCCT 1 cut(s) 546
SspMI CTAG 3 cut(s) 312, 530, 615
SstI GAGCTC 1 cut(s) 920
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 4 cut(s) 592, 622, 638, 758
TaiI ACGT 5 cut(s) 185, 571, 753, 771, 780
TaqI TCGA 5 cut(s) 137, 420, 509, 692, 1135
TasI AATT 4 cut(s) 379, 473, 583, 924
TatI WGTACW 2 cut(s) 3, 696
TfiI GAWTC 2 cut(s) 409, 1132
Tru1I TTAA 4 cut(s) 342, 377, 405, 753
Tru9I TTAA 4 cut(s) 342, 377, 405, 753
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 2 cut(s) 336, 504
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 6 cut(s) 23, 93, 211, 401, 698, 996
TspGWI ACGGA 3 cut(s) 551, 861, 1139
TspRI CASTG 1 cut(s) 625
XapI RAATTY 2 cut(s) 379, 473
XspI CTAG 3 cut(s) 312, 530, 615
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.