pycom13g04610

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001480
Physical Location & Seq
Reverse (-)
3087604 .. 3089845
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04610.3

Sequence Viewer

Length: 1338 bp
ATGTATGTTACAAAGCCTCTGTCTGTGTATAGAAGGTCTCCTCAGTTACTTTCTCTACCGCCCCCGGAGGGGCCAAATTCCGGTTATCTTGTACTTCATGACGACGAATCAGTCGAGATAAACTGTTGTGGATGCGAGGACAACGTGGTTAGAGGTTTGCCTTTCCCTCAGAACAAGGATCTAACCGTTGGATATGGCTCAGATGACGATGCTGTTGCCTTCATTCCAGTGCTTAATCAACCCTTGTCATCCAATCAATACCATGTCATACGTCGACGAGGGAGACATAAAGGGGAAGCATGCACAAATACGAGGGAAGAGGACACGGATATTGGCTGTTGCGGCGGTAAAAGTATTCCAAATGCTATACCAAAACCCTTGGACCCGTCAGACATATATCAGCAATTTAGGATACTTCCCAAGGAGATGGGCAGCAGTCGTTTTTTTGCCAAGTCTGTTGATCCAGATGGTTTTCCTCCTTACTTCTTGAGGAGGAAAGGGTGGAGCGTGAGAATGAGCACGCTGGATCGTAACCAATTGGGTGAAGCCTCAGGACTCAACTCTTCACTACGAGCTAGCCTTCCCGGGTTTGATTTTCCATTATCACATGATTGCTCTGAAGTAGTCGTTAATGAGAACGCCGTAGGAAAAAAGAATCCTGCTGTGTTTGTAAATGCTTTTGTTCAAAGAGAGGTGGTTTATGTGGGTGGACAGGAGGCTGTTTGGGATGAAAGAAATGCGGGTGCGGGTGATATGTTCGTGTGGTTTAAGAGTTTTGATGGGGTGGGAGGAGAAACAAGTGTGGGATTGAGCATGAAAGTTTTTGAAAGAATGAAATGGGAGCAGGAAAGAGTTGGATGGGTTGGTGGGGATGAAGGGCAAGTGAGGGTGGAGAGAGTGGAAGAGTTTGGGGGAAGGGGTGGTGGCGGGTGGAAGAGATTTAGTTGTTATGTGCTAGTAGAAAGCGAAGACAACGCCGTGGTGGTTGATATGTTCATTGAAAACGAGTCTGTTGCTGTTGGTGGGAACGCGGATGCTGTGCATGAGGAGATGGATGTGGCTAATGGGGTTATGTGGTATAGGGGTTTAGACAATGTGGGGGTGAGCTTAGCAATTGTGGAGGGGATGAAGTGGGAGCAACAAAGGTTTGGAAGGTTTGGAGGGAATGAGAGGCAAGTGAGAGTGAAAAGGTTAGAGGAGTTTGGAGGGGTGGGTAAGTGGATAAAATTTGGTTGCTATGTTTTGGTAGAGAGGTTTGTGTTCAAAAGAATGGATGGAGGCTCGGTGCTAACTTCTGATTTCAAACACACTCAACACATTAGCAGCAAATGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

446

Amino Acids

49.61

Weight (kDa)

5.43

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 274
AccII CGCG 1 cut(s) 1031
AciI CCGC 7 cut(s) 59, 342, 345, 740, 746, 927, 1031
AclWI GGATC 3 cut(s) 186, 455, 534
AcsI RAATTY 2 cut(s) 76, 1226
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 3 cut(s) 68, 69, 80
AgsI TTSAA 5 cut(s) 686, 827, 1001, 1264, 1303
AluBI AGCT 2 cut(s) 575, 1107
AluI AGCT 2 cut(s) 575, 1107
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 2 cut(s) 42, 277
AlwI GGATC 3 cut(s) 186, 455, 534
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 432, 1323
ApoI RAATTY 2 cut(s) 76, 1226
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 71, 382
AsuC2I CCSGG 3 cut(s) 65, 585, 586
AsuHPI GGTGA 3 cut(s) 554, 761, 1114
AsuNHI GCTAGC 1 cut(s) 575
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 444
BccI CCATC 6 cut(s) 421, 461, 773, 852, 1045, 1268
BceAI ACGGC 2 cut(s) 626, 962
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 995, 1029
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 3 cut(s) 65, 585, 586
BcoDI GTCTC 2 cut(s) 42, 277
BfaI CTAG 2 cut(s) 576, 956
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 3 cut(s) 343, 433, 1324
BlpI GCTNAGC 1 cut(s) 1108
BlsI GCNGC 3 cut(s) 344, 434, 1325
Bme1390I CCNGG 3 cut(s) 65, 585, 586
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 71, 382
BmiI GGNNCC 2 cut(s) 72, 384
BmrFI CCNGG 3 cut(s) 65, 585, 586
BmsI GCATC 3 cut(s) 122, 199, 1024
BmtI GCTAGC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 975
Bpu1102I GCTNAGC 1 cut(s) 1108
BpuEI CTTGAG 1 cut(s) 508
BpuMI CCSGG 3 cut(s) 65, 585, 586
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 5 cut(s) 63, 378, 420, 584, 978
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 1269, 1299
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 69, 80
Bse1I ACTGG 1 cut(s) 227
Bse21I CCTNAGG 1 cut(s) 550
BseDI CCNNGG 5 cut(s) 63, 378, 420, 584, 978
BseGI GGATG 9 cut(s) 137, 248, 733, 863, 877, 1039, 1060, 1131, 1279
BseLI CCNNNNNNNGG 3 cut(s) 68, 69, 80
BseMII CTCAG 4 cut(s) 56, 182, 213, 564
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 5 cut(s) 30, 505, 804, 1061, 1211
BseXI GCAGC 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 1031
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 65, 81, 585
BslI CCNNNNNNNGG 3 cut(s) 68, 69, 80
BsmAI GTCTC 2 cut(s) 42, 277
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 3 cut(s) 178, 460, 526
Bsp1720I GCTNAGC 1 cut(s) 1108
BspACI CCGC 7 cut(s) 59, 342, 345, 740, 746, 927, 1031
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 4 cut(s) 55, 181, 212, 563
BspFNI CGCG 1 cut(s) 1031
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 72, 384
BspOI GCTAGC 1 cut(s) 579
BspPI GGATC 3 cut(s) 186, 455, 534
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 5 cut(s) 63, 378, 420, 584, 978
BssMI GATC 3 cut(s) 178, 460, 526
BssT1I CCWWGG 2 cut(s) 378, 420
Bst4CI ACNGT 2 cut(s) 125, 187
Bst6I CTCTTC 4 cut(s) 312, 568, 897, 929
BstC8I GCNNGC 3 cut(s) 301, 521, 577
BstDEI CTNAG 5 cut(s) 42, 168, 199, 550, 1108
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 9 cut(s) 137, 248, 733, 863, 877, 1039, 1060, 1131, 1279
BstFNI CGCG 1 cut(s) 1031
BstKTI GATC 3 cut(s) 181, 463, 529
BstMAI GTCTC 2 cut(s) 42, 277
BstMBI GATC 3 cut(s) 178, 460, 526
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 3 cut(s) 63, 583, 584
BstUI CGCG 1 cut(s) 1031
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 550
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 9 cut(s) 137, 248, 733, 863, 877, 1039, 1060, 1131, 1279
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 301, 521, 577
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 71, 382
Cfr9I CCCGGG 1 cut(s) 584
Csp6I GTAC 1 cut(s) 92
CviAII CATG 6 cut(s) 98, 263, 300, 608, 814, 1043
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 5 cut(s) 42, 168, 199, 550, 1108
DpnI GATC 3 cut(s) 180, 462, 528
DpnII GATC 3 cut(s) 178, 460, 526
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 4 cut(s) 312, 568, 897, 929
EarI CTCTTC 4 cut(s) 312, 568, 897, 929
Eco130I CCWWGG 2 cut(s) 378, 420
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 639
Eco81I CCTNAGG 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 584
EcoT14I CCWWGG 2 cut(s) 378, 420
ErhI CCWWGG 2 cut(s) 378, 420
FaeI CATG 6 cut(s) 101, 266, 303, 611, 817, 1046
FatI CATG 6 cut(s) 97, 262, 299, 607, 813, 1042
FauI CCCGC 3 cut(s) 733, 739, 920
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 343, 433, 1324
FokI GGATG 9 cut(s) 144, 235, 740, 870, 884, 1046, 1067, 1138, 1286
Fsp4HI GCNGC 3 cut(s) 343, 433, 1324
FspBI CTAG 2 cut(s) 576, 956
GluI GCNGC 3 cut(s) 343, 433, 1324
HaeIII GGCC 1 cut(s) 73
HapII CCGG 3 cut(s) 65, 81, 585
Hin1II CATG 6 cut(s) 101, 266, 303, 611, 817, 1046
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 4 cut(s) 107, 555, 655, 1007
HpaII CCGG 3 cut(s) 65, 81, 585
HphI GGTGA 3 cut(s) 554, 761, 1114
Hpy166II GTNNAC 2 cut(s) 275, 710
Hpy188I TCNGA 5 cut(s) 171, 202, 391, 619, 1297
Hpy188III TCNNGA 5 cut(s) 98, 115, 464, 487, 552
Hpy8I GTNNAC 2 cut(s) 275, 710
Hpy99I CGWCG 3 cut(s) 107, 276, 279
HpyAV CCTTC 6 cut(s) 27, 229, 590, 869, 909, 1146
HpyCH4III ACNGT 2 cut(s) 125, 187
HpyCH4IV ACGT 2 cut(s) 144, 271
HpyCH4V TGCA 2 cut(s) 303, 1042
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 5 cut(s) 42, 168, 199, 550, 1108
HpySE526I ACGT 2 cut(s) 144, 271
Hsp92II CATG 6 cut(s) 101, 266, 303, 611, 817, 1046
Kzo9I GATC 3 cut(s) 178, 460, 526
LmnI GCTCC 3 cut(s) 504, 841, 1135
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 3 cut(s) 122, 199, 1024
MaeI CTAG 2 cut(s) 576, 956
MaeII ACGT 2 cut(s) 144, 271
MaeIII GTNAC 3 cut(s) 7, 45, 530
MalI GATC 3 cut(s) 180, 462, 528
MboI GATC 3 cut(s) 178, 460, 526
MboII GAAGA 5 cut(s) 329, 555, 914, 946, 980
MfeI CAATTG 2 cut(s) 536, 1113
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 5 cut(s) 76, 404, 536, 1113, 1226
MlyI GAGTC 2 cut(s) 549, 1016
MmeI TCCRAC 2 cut(s) 169, 835
MseI TTAA 3 cut(s) 234, 630, 768
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 3 cut(s) 65, 81, 585
MspR9I CCNGG 3 cut(s) 65, 585, 586
MunI CAATTG 2 cut(s) 536, 1113
MvnI CGCG 1 cut(s) 1031
MwoI GCNNNNNNNGC 1 cut(s) 342
NciI CCSGG 3 cut(s) 65, 585, 586
NdeII GATC 3 cut(s) 178, 460, 526
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 101, 266, 303, 611, 817, 1046
NlaIV GGNNCC 2 cut(s) 72, 384
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PagI TCATGA 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 2 cut(s) 107, 655
PkrI GCNGC 3 cut(s) 344, 434, 1325
PleI GAGTC 2 cut(s) 549, 1015
PpsI GAGTC 2 cut(s) 549, 1015
PspN4I GGNNCC 2 cut(s) 72, 384
PspPI GGNCC 2 cut(s) 71, 382
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 227
SalI GTCGAC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 234, 630, 768
SatI GCNGC 3 cut(s) 343, 433, 1324
Sau3AI GATC 3 cut(s) 178, 460, 526
Sau96I GGNCC 2 cut(s) 71, 382
SchI GAGTC 2 cut(s) 549, 1016
ScrFI CCNGG 3 cut(s) 65, 585, 586
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 3 cut(s) 122, 199, 1024
SgrDI CGTCGACG 1 cut(s) 273
SinI GGWCC 1 cut(s) 382
SmaI CCCGGG 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SphI GCATGC 1 cut(s) 303
Sse9I AATT 5 cut(s) 76, 404, 536, 1113, 1226
SsiI CCGC 7 cut(s) 59, 342, 345, 740, 746, 927, 1031
SspMI CTAG 2 cut(s) 576, 956
StyD4I CCNGG 3 cut(s) 63, 583, 584
StyI CCWWGG 2 cut(s) 378, 420
TaaI ACNGT 2 cut(s) 125, 187
TaiI ACGT 2 cut(s) 147, 274
TaqI TCGA 2 cut(s) 114, 274
TasI AATT 5 cut(s) 76, 404, 536, 1113, 1226
TatI WGTACW 1 cut(s) 91
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 2 cut(s) 107, 655
Tru1I TTAA 3 cut(s) 234, 630, 768
Tru9I TTAA 3 cut(s) 234, 630, 768
TscAI CASTG 1 cut(s) 234
TseI GCWGC 2 cut(s) 432, 1323
TspDTI ATGAA 8 cut(s) 86, 211, 744, 830, 848, 888, 985, 1142
TspGWI ACGGA 1 cut(s) 341
TspMI CCCGGG 1 cut(s) 584
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 2 cut(s) 76, 1226
XceI RCATGY 1 cut(s) 303
XmaI CCCGGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 2 cut(s) 576, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.