Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Forward (+)

7876363 .. 7877177

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTACGTGACAAGGCCTCTGTCTATGTGTATGAGGTCTCCAGAGTTATTGTTCTGTTCTTACCACCCCCAGAGGGACCAAATTCTGGTTATCTTGTACTCCAAGATGAAGAATCAATATATCCAAACCTCGTGTTTCGGAATGTGCAAACATATCGATACTAAGCAGCTGCCTTTCCCTCAGAACATGGACTTAACAGTTGGATATACCGAAGATATTAACGACGAGGCTACCCTCATTCCAGTGCTTGATCAGCCCTTATCTTCCAATACATACTATGTGATACGCCGCAGTGGGAGGCATAGAGGGTACAATATTTTTCGTGTTCATCTCTTCGTTCCCCTTGCTCGCTTTAATTTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

122

Amino Acids

14.26

Weight (kDa)

8.98

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1262	PF06880	36 - 104	1.7e-22	Protein of unknown function (DUF1262)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AciI	CCGC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	3 cut(s)	5, 98, 311
AfiI	CCNNNNNNNGG	2 cut(s)	73, 85
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	166, 169
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	156, 178
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	167, 170, 289
BlsI	GCNGC	3 cut(s)	168, 171, 290
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 85
Bse1I	ACTGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	73, 85
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	156, 178
BshFI	GGCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	73, 85
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	16
Bso31I	GGTCTC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	193
BspDI	ATCGAT	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	162, 180
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	156, 178
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	16
BsuTUI	ATCGAT	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	249, 298
Cac8I	GCNNGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	4, 97, 310
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	4 cut(s)	16, 169, 230, 256
CviKI_1	RGCY	4 cut(s)	16, 169, 230, 256
CviQI	GTAC	3 cut(s)	4, 97, 310
DdeI	CTNAG	2 cut(s)	162, 180
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	76
FaeI	CATG	1 cut(s)	190
FaiI	YATR	9 cut(s)	26, 32, 120, 153, 188, 207, 274, 279, 303
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	167, 170, 289
Fsp4HI	GCNGC	3 cut(s)	167, 170, 289
GluI	GCNGC	3 cut(s)	167, 170, 289
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	140, 183
Hpy188III	TCNNGA	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	162, 180
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	54, 71, 83, 255
Lsp1109I	GCAGC	2 cut(s)	156, 178
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	4 cut(s)	121, 224, 255, 325
MluCI	AATT	2 cut(s)	81, 355
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	9 cut(s)	27, 27, 66, 139, 189, 220, 245, 291, 299
MseI	TTAA	4 cut(s)	194, 219, 354, 364
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	168, 171, 290
Ppu21I	YACGTR	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	5, 98, 311
RsaNI	GTAC	3 cut(s)	4, 97, 310
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	194, 219, 354, 364
SatI	GCNGC	3 cut(s)	167, 170, 289
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	76
SetI	ASST	4 cut(s)	9, 38, 131, 171
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	81, 355
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	81, 355
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	194, 219, 354, 364
Tru9I	TTAA	4 cut(s)	194, 219, 354, 364
TscAI	CASTG	2 cut(s)	249, 298
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	166, 169
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	122, 317
TspRI	CASTG	2 cut(s)	249, 298
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.