Rh4CG372200

Protein of unknown function (DUF1262)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001480
Physical Location & Seq
Reverse (-)
62689510 .. 62690315
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG372200.1

Sequence Viewer

Length: 723 bp
ATGTATGTGACAAGGCCTCTGTCTATGTATCGAAGGTCTCCTGAATCACTGTCAGCGCCAACCCCGGAAGGGCCAAATTCCGGTTATCTTGTGCTCCATGATATTGAAGAATCGGTTGAGACTACGTGTTTTGGATGTTGCGAAGATACTGATGACCTGAAAGACTTGCCTTTCCCTCAGAACAAGGATCTCTCAGTTGGATATTCGTCAGATAATGATGATGTTGCCTTCATTCCCGTTCTTGATAAGCCTTTATCTGCCAATACATACCATGTGGTACGCCGGAATGGGAAACACAGAGGGGAAGTGTGCACAAATTCAAAGGAAGAGAACATGGTAGATATTGGCTGGTTTGGCAAAACTGTCCTCGATGTAAAACCAAAGCCATTGGATCCATCAGACATATATCAACAAATTGAGATAATTCCAAAGCACCGCGGTTACTTTACTGCCAAGGCTGTTGCTTCAGATGGGATTCCTCCTAAATTTTTGAGAAGAAAATCAGGTTGGCCGGTCACCATGGCCACACCCCATTACCAACTAGGTGCAACTCCAGGACTCAAAGCTTCGAAGCGATCGGGCCTTCCTGGTTTCGACTTTCCATTGTCCAAAGATTGTTCTGAGGCTATGATATATAGTTGGCAAGTGGCACTGTCCTTTCTTGCATATCAAGGAAGGGGGATTGAAGTTAAAGCAGCAAATGAAGCAATGCATGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1262

Protein Analysis

240

Amino Acids

26.64

Weight (kDa)

6.08

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 23 - 114 9.5e-32 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 438
AciI CCGC 2 cut(s) 436, 438
AclWI GGATC 3 cut(s) 195, 386, 399
AcoI YGGCCR 2 cut(s) 509, 522
AcsI RAATTY 3 cut(s) 76, 316, 485
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 69, 80
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 107, 321, 686
AjnI CCWGG 2 cut(s) 553, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 490, 522
AluBI AGCT 1 cut(s) 566
AluI AGCT 1 cut(s) 566
Alw21I GWGCWC 2 cut(s) 96, 314
Alw26I GTCTC 2 cut(s) 42, 113
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 3 cut(s) 195, 386, 399
AoxI GGCC 5 cut(s) 14, 71, 509, 522, 580
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 3 cut(s) 76, 316, 485
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 71, 580
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 524
BamHI GGATCC 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 96, 314
BbvI GCAGC 1 cut(s) 707
BccI CCATC 2 cut(s) 403, 464
BciT130I CCWGG 2 cut(s) 555, 588
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 42, 113
BfaI CTAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 59
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 65, 555, 588
BmgT120I GGNCC 2 cut(s) 71, 580
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 65, 555, 588
BpmI CTGGAG 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 63, 436, 453, 519
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 80
Bse118I RCCGGY 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 555, 588
BseDI CCNNGG 4 cut(s) 63, 436, 453, 519
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 69, 80
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 3 cut(s) 191, 207, 612
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 578
BshFI GGCC 5 cut(s) 16, 73, 511, 524, 582
BsiEI CGRYCG 1 cut(s) 578
BsiHKAI GWGCWC 2 cut(s) 96, 314
BsiSI CCGG 4 cut(s) 65, 81, 283, 512
BslI CCNNNNNNNGG 2 cut(s) 69, 80
BsmAI GTCTC 2 cut(s) 42, 113
BsnI GGCC 5 cut(s) 16, 73, 511, 524, 582
Bso31I GGTCTC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 96, 314
Bsp143I GATC 3 cut(s) 187, 391, 575
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 2 cut(s) 436, 438
BspANI GGCC 5 cut(s) 16, 73, 511, 524, 582
BspCNI CTCAG 3 cut(s) 190, 206, 613
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 3 cut(s) 195, 386, 399
BspT104I TTCGAA 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 4 cut(s) 63, 436, 453, 519
BssMI GATC 3 cut(s) 187, 391, 575
BssT1I CCWWGG 2 cut(s) 453, 519
Bst2UI CCWGG 2 cut(s) 555, 588
Bst4CI ACNGT 3 cut(s) 51, 364, 654
Bst6I CTCTTC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 569
BstDEI CTNAG 3 cut(s) 177, 193, 621
BstDSI CCRYGG 2 cut(s) 436, 519
BstEII GGTNACC 1 cut(s) 514
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 190, 394, 578
BstMAI GTCTC 2 cut(s) 42, 113
BstMBI GATC 3 cut(s) 187, 391, 575
BstMCI CGRYCG 1 cut(s) 578
BstMWI GCNNNNNNNGC 2 cut(s) 354, 704
BstNI CCWGG 2 cut(s) 555, 588
BstNSI RCATGY 1 cut(s) 716
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 3 cut(s) 63, 553, 586
BstSLI GKGCMC 1 cut(s) 314
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 707
BstX2I RGATCY 2 cut(s) 187, 391
BstYI RGATCY 2 cut(s) 187, 391
BsuRI GGCC 5 cut(s) 16, 73, 511, 524, 582
BtgI CCRYGG 2 cut(s) 436, 519
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 47, 650
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 71, 580
Cfr42I CCGCGG 1 cut(s) 439
Csp6I GTAC 1 cut(s) 278
CviAII CATG 5 cut(s) 98, 272, 334, 520, 713
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 3 cut(s) 177, 193, 621
DpnI GATC 3 cut(s) 189, 393, 577
DpnII GATC 3 cut(s) 187, 391, 575
EaeI YGGCCR 2 cut(s) 509, 522
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 453, 519
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 450
Eco91I GGTNACC 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 553, 586
EcoT14I CCWWGG 2 cut(s) 453, 519
EcoT22I ATGCAT 1 cut(s) 714
ErhI CCWWGG 2 cut(s) 453, 519
FaeI CATG 5 cut(s) 101, 275, 337, 523, 716
FatI CATG 5 cut(s) 97, 271, 333, 519, 712
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 1 cut(s) 542
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 5 cut(s) 16, 73, 511, 524, 582
HapII CCGG 4 cut(s) 65, 81, 283, 512
HhaI GCGC 1 cut(s) 58
Hin1II CATG 5 cut(s) 101, 275, 337, 523, 716
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 4 cut(s) 44, 110, 475, 558
HpaII CCGG 4 cut(s) 65, 81, 283, 512
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 5 cut(s) 180, 211, 400, 469, 622
Hpy188III TCNNGA 2 cut(s) 41, 242
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 5 cut(s) 27, 62, 238, 593, 669
HpyCH4III ACNGT 3 cut(s) 51, 364, 654
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 312, 548, 665, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 704
HpyF3I CTNAG 3 cut(s) 177, 193, 621
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 5 cut(s) 101, 275, 337, 523, 716
HspAI GCGC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 439
Kzo9I GATC 3 cut(s) 187, 391, 575
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 707
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 3 cut(s) 7, 440, 514
MalI GATC 3 cut(s) 189, 393, 577
MboI GATC 3 cut(s) 187, 391, 575
MboII GAAGA 4 cut(s) 119, 155, 338, 507
MflI RGATCY 2 cut(s) 187, 391
MhlI GDGCHC 2 cut(s) 96, 314
MlsI TGGCCA 1 cut(s) 524
MluCI AATT 5 cut(s) 76, 316, 414, 423, 485
MluNI TGGCCA 1 cut(s) 524
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 6 cut(s) 27, 186, 293, 377, 489, 616
Mox20I TGGCCA 1 cut(s) 524
Mph1103I ATGCAT 1 cut(s) 714
MscI TGGCCA 1 cut(s) 524
MseI TTAA 1 cut(s) 690
Msp20I TGGCCA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 4 cut(s) 65, 81, 283, 512
MspR9I CCNGG 3 cut(s) 65, 555, 588
MvaI CCWGG 2 cut(s) 555, 588
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 354, 704
NciI CCSGG 1 cut(s) 65
NcoI CCATGG 1 cut(s) 519
NdeII GATC 3 cut(s) 187, 391, 575
NlaIII CATG 5 cut(s) 101, 275, 337, 523, 716
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 7, 514
NsiI ATGCAT 1 cut(s) 714
NspI RCATGY 1 cut(s) 716
NspV TTCGAA 1 cut(s) 569
PceI AGGCCT 1 cut(s) 16
PfeI GAWTC 3 cut(s) 44, 110, 475
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 1 cut(s) 697
Ple19I CGATCG 1 cut(s) 578
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Ppu21I YACGTR 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 553, 586
PspEI GGTNACC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 553, 586
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 71, 580
PsuI RGATCY 2 cut(s) 187, 391
PvuI CGATCG 1 cut(s) 578
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SacII CCGCGG 1 cut(s) 439
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 3 cut(s) 187, 391, 575
Sau96I GGNCC 2 cut(s) 71, 580
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 3 cut(s) 65, 555, 588
SduI GDGCHC 2 cut(s) 96, 314
SetI ASST 6 cut(s) 38, 128, 159, 508, 547, 568
Sfr303I CCGCGG 1 cut(s) 439
SfuI TTCGAA 1 cut(s) 569
SgrBI CCGCGG 1 cut(s) 439
Sse9I AATT 5 cut(s) 76, 316, 414, 423, 485
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 2 cut(s) 436, 438
SspMI CTAG 1 cut(s) 542
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 63, 553, 586
StyI CCWWGG 2 cut(s) 453, 519
TaaI ACNGT 3 cut(s) 51, 364, 654
TaiI ACGT 1 cut(s) 128
TaqI TCGA 4 cut(s) 31, 369, 569, 594
TasI AATT 5 cut(s) 76, 316, 414, 423, 485
TfiI GAWTC 3 cut(s) 44, 110, 475
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 2 cut(s) 54, 657
TseFI GTSAC 2 cut(s) 7, 514
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 2 cut(s) 7, 514
TspDTI ATGAA 2 cut(s) 220, 717
TspRI CASTG 2 cut(s) 54, 657
VneI GTGCAC 1 cut(s) 310
XapI RAATTY 3 cut(s) 76, 316, 485
XceI RCATGY 1 cut(s) 716
XspI CTAG 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.