Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001480

Physical Location & Seq

Genomic Coordinates Reverse (-)

35012573 .. 35013478

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACTGCTGCTTCAGAGACTTCTCGAGGGACAAGAAACCAGTACCTTTGAATCTAAGAAACACATACCAACAAGTTAAGATTCATCGGCACCAAGGAGGCGGTTTCTTCGCAGAGTCTGTTGCTCCTGATGGTGTTCCTCCAAAGTTTCTAAGGAAAAAAGGATGGGTAATCCGCAGCTCAAGTTTGTACCGATGGCAGTTAAGTGATGCCTTAGGCCTTGACACTTCCCTCCGATTGCGCTTCCCTGACTTCAACTTCCCCATCTTTAAGAAACGTTCAGCTTCTAACGTTGTGGGGAAATGGTACAGTCCATTTGTGTTTGTGAGAGAGAGATCCAGCGTAAGACGCCAGATGAAGAAGTCGAAATTCTACAGAATATCTATGGAGCAGTGGTGGGAAGAGATTTACTCCTGTGGGAATACTAGCAATGAAGGCAATGTTGTGAATGTGGATGTAAGTGTACAAAGGGAAGTGGCTTTTGTATCTGCCGCGGAAGCTGTCAAGGACGACAGAAATGGTCGTACAGGGTTCACTTGGTTCAAGGCTTATAATCCAGACAGCCGAAAACTGGTCACCATCGGTTTGAGCTCCGCGATTGTCCAGAATATGAAATGGGTTTTAGAGGCAGGAGGGTGGGTTACTGGGGATGAGAAGGACACAAGGGTGCAGAAAGTAGAAGAGATCAGAGACGGGTGGAGGAAGTTCGGCTGTTATGTTCTGGTGGAGAGTTTCAAATTGAGAAGAATGGACGGAAGCCTGGTATTGAGACATGACTTCAGGCACACTAACACCATAAGAAGTAAATGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1262

Protein Analysis

272

Amino Acids

31.66

Weight (kDa)

10.01

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61600
fragaria_vesca	FvH4_4g28540 FvH4_4g28541 FvH4_4g28542 FvH4_4g28543 FvH4_4g28551 FvH4_6g45700
malus_domestica	MD09G1080800.v1.1 MD13G1051500.v1.1 MD13G1051600.v1.1 MD13G1051800.v1.1 MD16G1057900.v1.1
prunus_persica	Prupe.1G300200_v2.0.a1 Prupe.1G300300_v2.0.a1 Prupe.1G300400_v2.0.a1 Prupe.3G243200_v2.0.a1
pyrus_communis	pycom09g00720 pycom13g04570 pycom13g04590 pycom13g04600 pycom13g04610 pycom16g05070
rosa_chinensis	RchiOBHm_Chr2g0163851 RchiOBHm_Chr4g0436581 RchiOBHm_Chr4g0436641
rosa_laevigata	RLG00000006506 RLG00000006509
rosa_multiflora	Rmu_sc0003130.1_g000009 Rmu_sc0003130.1_g000016
rosa_roxburghii	Rroxscaffold_1G00028970 Rroxscaffold_2G00086960 Rroxscaffold_5G00377710
rosa_rugosa	Rorug02G0505000 Rorug04G0294800
rosa_samantha	Rh2AG573000 Rh2BG583700 Rh2CG554600 Rh2CG554700 Rh2DG593200 Rh4AG349300 Rh4BG357700 Rh4BG358000 Rh4CG372100 Rh4CG372200 Rh4CG372400 Rh4DG351700 Rh4DG351900 Rh4DG352200 Rh5AG340700
rosa_wichuraiana	Rw2G047380 Rw4G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	90
AccII	CGCG	2 cut(s)	494, 596
AciI	CCGC	5 cut(s)	102, 175, 492, 494, 594
AclI	AACGTT	2 cut(s)	277, 291
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	763
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	5 cut(s)	45, 191, 308, 465, 526
AfiI	CCNNNNNNNGG	1 cut(s)	571
AgsI	TTSAA	4 cut(s)	52, 256, 544, 736
AjnI	CCWGG	1 cut(s)	759
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	180, 284, 500, 591
AluI	AGCT	4 cut(s)	180, 284, 500, 591
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	12, 684, 763
AlwI	GGATC	1 cut(s)	330
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	9, 177
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	568
AvaI	CYCGRG	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	5 cut(s)	125, 159, 189, 272, 587
BciT130I	CCWGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	12, 684, 763
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	3 cut(s)	10, 178, 492
BlsI	GCNGC	3 cut(s)	11, 179, 493
Bme1390I	CCNGG	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	761
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	349
BsaJI	CCNNGG	2 cut(s)	94, 492
BsaXI	ACNNNNNCTCC	4 cut(s)	380, 410, 624, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	41, 576, 649
Bse21I	CCTNAGG	1 cut(s)	214
Bse3DI	GCAATG	2 cut(s)	436, 445
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	94, 492
BseGI	GGATG	3 cut(s)	170, 460, 655
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMI	GCAATG	2 cut(s)	436, 445
BseNI	ACTGG	3 cut(s)	41, 576, 649
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	494, 596
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmAI	GTCTC	3 cut(s)	12, 684, 763
BsmBI	CGTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	335, 684
BspACI	CCGC	5 cut(s)	102, 175, 492, 494, 594
BspANI	GGCC	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	494, 596
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	436, 445
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	41, 576, 649
BssECI	CCNNGG	2 cut(s)	94, 492
BssMI	GATC	2 cut(s)	335, 684
BssNI	GRCGYC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	396, 675
BstACI	GRCGYC	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	56, 152, 214
BstDSI	CCRYGG	1 cut(s)	492
BstEII	GGTNACC	1 cut(s)	574
BstF5I	GGATG	3 cut(s)	170, 460, 655
BstFNI	CGCG	2 cut(s)	494, 596
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	338, 687
BstMAI	GTCTC	3 cut(s)	12, 684, 763
BstMBI	GATC	2 cut(s)	335, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 435, 497
BstNI	CCWGG	1 cut(s)	761
BstPI	GGTNACC	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	2 cut(s)	494, 596
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	170, 460, 655
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	243
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	5 cut(s)	44, 190, 307, 464, 525
CviAII	CATG	1 cut(s)	773
CviQI	GTAC	5 cut(s)	44, 190, 307, 464, 525
DdeI	CTNAG	3 cut(s)	56, 152, 214
DpnI	GATC	2 cut(s)	337, 686
DpnII	GATC	2 cut(s)	335, 684
Eam1104I	CTCTTC	2 cut(s)	396, 675
EarI	CTCTTC	2 cut(s)	396, 675
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	763
Eco81I	CCTNAGG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	591
EcoO65I	GGTNACC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	1 cut(s)	776
FaiI	YATR	7 cut(s)	67, 386, 552, 611, 717, 774, 797
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	10, 178, 492
FokI	GGATG	3 cut(s)	177, 467, 662
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	3 cut(s)	10, 178, 492
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	10, 178, 492
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	1 cut(s)	776
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	52, 82, 116
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	464, 534
Hpy188I	TCNGA	3 cut(s)	17, 236, 689
Hpy188III	TCNNGA	4 cut(s)	25, 128, 557, 604
Hpy8I	GTNNAC	2 cut(s)	464, 534
HpyAV	CCTTC	2 cut(s)	428, 649
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	277, 291
HpyCH4V	TGCA	1 cut(s)	670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 435, 497
HpyF3I	CTNAG	3 cut(s)	56, 152, 214
HpySE526I	ACGT	2 cut(s)	277, 291
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	776
HspAI	GCGC	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	2 cut(s)	335, 684
LmnI	GCTCC	3 cut(s)	130, 388, 596
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	277, 291
MaeIII	GTNAC	2 cut(s)	574, 640
MalI	GATC	2 cut(s)	337, 686
MboI	GATC	2 cut(s)	335, 684
MboII	GAAGA	5 cut(s)	100, 370, 413, 692, 756
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	2 cut(s)	368, 737
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	21, 92, 150, 242, 619, 626, 693
MseI	TTAA	3 cut(s)	78, 203, 270
MslI	CAYNNNNRTG	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	761
MvnI	CGCG	2 cut(s)	494, 596
MwoI	GCNNNNNNNGC	3 cut(s)	348, 435, 497
NdeII	GATC	2 cut(s)	335, 684
NlaIII	CATG	1 cut(s)	776
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	52, 82
PkrI	GCNGC	3 cut(s)	11, 179, 493
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	593
Psp1406I	AACGTT	2 cut(s)	277, 291
Psp6I	CCWGG	1 cut(s)	759
PspEI	GGTNACC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	5 cut(s)	45, 191, 308, 465, 526
RsaNI	GTAC	5 cut(s)	44, 190, 307, 464, 525
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	593
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	78, 203, 270
SatI	GCNGC	3 cut(s)	10, 178, 492
Sau3AI	GATC	2 cut(s)	335, 684
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	7 cut(s)	49, 182, 280, 286, 294, 502, 593
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	373
Sfr274I	CTCGAG	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SlaI	CTCGAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	2 cut(s)	25, 181
SmoI	CTYRAG	2 cut(s)	25, 181
Sse9I	AATT	2 cut(s)	368, 737
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	5 cut(s)	102, 175, 492, 494, 594
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	280, 294
TaqI	TCGA	2 cut(s)	26, 365
TasI	AATT	2 cut(s)	368, 737
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	52, 82
Tru1I	TTAA	3 cut(s)	78, 203, 270
Tru9I	TTAA	3 cut(s)	78, 203, 270
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	2 cut(s)	9, 177
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	5 cut(s)	17, 74, 371, 447, 626
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	25
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.