AT1G61680

S-( )-linalool synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22772315 .. 22774720
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61680.1

Sequence Viewer

Length: 1710 bp
ATGGCCTTAATAGCTACCAAAATAAGTTCACGTTCTTGTTTTGTTTCTGCTTATCCAAACAATTCTCCAACGTTTCTGATATCCAAATTTCCCAATACGGTCGATTCTTTGTCGCCTGCAAATACTGCTAAAAGATCGATCTTGAGAAACGTCCATGCTTCAGTTTCTAACCCTTCGAAGCAGTTTCATAATAAGACATCCTTAGAATATTTACACGAGTTGAATATCAAGAAGATCAAGAATATACTAAGTGCAAACGTAGATGTTCCATCCGAGAACCTGGAGATGATCGATGTCATTCAAAGTTTAGGCATTGATCTCCATTTTCGACAAGAGATCGAGCAAACCCTTCACATGATTTACAAAGAAGGCCTCCAATTCAACGGTGATCTCCATGAGATAGCGCTTCGCTTTCGATTGCTGAGACAAGAGGGTCACTATGTTCAAGAAATTATTTTCAAAAACATCCTAGACAAGAAGGGTGGATTTAAAGACGTAGTAAAAAATGACGTCAAGGGTCTAACAGAATTGTTTGAAGCTTCTGAGCTCCGTGTAGAAGGTGAAGAAACACTCGACGGTGCGAGAGAATTCACATATAGCCGCCTTAATGAACTTTGCTCAGGTAGAGAAAGTCATCAAAAGCAAGAGATAATGAAGTCTTTGGCGCAACCTCGCCACAAAACCGTAAGAGGATTAACGTCCAAGAGGTTCACAAGCATGATCAAAATCGCGGGTCAAGAAGATCCAGAATGGTTACAGTCTCTATTACGAGTGGCGGAGATCGATTCCATTAGGCTAAAGTCATTGACTCAAGGAGAAATGTCTCAAACATTTAAATGGTGGACAGAACTTGGTTTAGAAAAAGATGTGGAGAAGGCAAGAAGCCAGCCGTTAAAATGGCATACGTGGTCCATGAAAATTCTTCAAGATCCGACCTTAACCGAACAAAGGCTTGATCTTACCAAACCAATATCGCTTGTTTATGTTATAGATGACATTTTCGATGTCTATGGGGAGCTAGAAGAACTAACCATCTTCACACGAGTTGTTGAGAGATGGGATCATAAGGGGCTTAAGACGCTACCCAAATACATGAGGGTTTGTTTTGAAGCTCTAGATATGATCACAACGGAGATTAGCATGAAGATCTACAAATCACATGGTTGGAACCCGACATACGCTCTTCGACAATCGTGGGCAAGTTTGTGTAAAGCATTCTTGGTAGAAGCAAAGTGGTTTAATTCGGGTTACTTACCCACCACTGAAGAGTATATGAAGAATGGGGTTGTGAGTTCAGGTGTTCATTTAGTGATGCTTCATGCCTATATCTTGTTAGGCGAAGAACTAACAAAAGAGAAAGTCGAACTAATAGAGAGTAACCCGGGGATTGTATCATCTGCAGCTACAATTCTCAGGCTCTGGGATGATCTCGGAAGTGCCAAGGATGAGAACCAAGATGGAACTGATGGATCATATGTAGAGTGTTACCTGAACGAGTACAAGGGATCAACTGTTGATGAAGCAAGAACACATGTTGCCCAGAAGATATCTAGAGCATGGAAACGCTTGAACAGGGAGTGTCTGAATCCATGTCCATTCTCAAGATCATTCTCAAAAGCTTGTCTCAACATTGCAAGAACAGTTCCTTTAATGTACAGCTATGATGATGATCAACGACTTCCCGACGAATATCTCAAGTCTCTAATGTAA

Protein Analysis

569

Amino Acids

65.4

Weight (kDa)

6.47

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 54 - 217 7.5e-40 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 283 - 521 2e-78 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 324 - 522 5.1e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 432
AatII GACGTC 1 cut(s) 513
AccII CGCG 1 cut(s) 731
AciI CCGC 3 cut(s) 601, 731, 776
AclI AACGTT 1 cut(s) 71
AclWI GGATC 5 cut(s) 737, 923, 1068, 1477, 1513
AcsI RAATTY 3 cut(s) 86, 587, 918
AcuI CTGAAG 2 cut(s) 144, 1284
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 2 cut(s) 1499, 1655
AfeI AGCGCT 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 948
AflII CTTAAG 1 cut(s) 1073
AflIII ACRYGT 1 cut(s) 1531
AgsI TTSAA 9 cut(s) 223, 302, 382, 446, 460, 536, 926, 1109, 1570
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 8 cut(s) 14, 539, 547, 1018, 1112, 1403, 1619, 1659
AluI AGCT 8 cut(s) 14, 539, 547, 1018, 1112, 1403, 1619, 1659
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 5 cut(s) 418, 765, 828, 1628, 1704
AlwI GGATC 5 cut(s) 737, 923, 1068, 1477, 1513
AlwNI CAGNNNCTG 1 cut(s) 1419
Ama87I CYCGRG 1 cut(s) 1381
Aor51HI AGCGCT 1 cut(s) 405
AoxI GGCC 2 cut(s) 3, 370
ApeKI GCWGC 1 cut(s) 1400
ApoI RAATTY 3 cut(s) 86, 587, 918
AspLEI GCGC 2 cut(s) 406, 667
AspS9I GGNCC 1 cut(s) 909
AsuC2I CCSGG 2 cut(s) 1382, 1383
AsuHPI GGTGA 2 cut(s) 398, 572
AsuII TTCGAA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 1381
AvaII GGWCC 1 cut(s) 909
BanII GRGCYC 1 cut(s) 549
BauI CACGAG 2 cut(s) 215, 1041
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 1412
BccI CCATC 5 cut(s) 277, 1040, 1050, 1451, 1460
BceAI ACGGC 1 cut(s) 874
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 3 cut(s) 720, 1122, 1669
BcnI CCSGG 2 cut(s) 1382, 1383
BcoDI GTCTC 5 cut(s) 418, 765, 828, 1628, 1704
BfaI CTAG 4 cut(s) 470, 1019, 1115, 1551
BfmI CTRYAG 1 cut(s) 1398
BfoI RGCGCY 1 cut(s) 407
BfrI CTTAAG 1 cut(s) 1073
BglII AGATCT 1 cut(s) 1146
BisI GCNGC 2 cut(s) 601, 1401
BlsI GCNGC 2 cut(s) 602, 1402
Bme1390I CCNGG 3 cut(s) 281, 1382, 1383
Bme18I GGWCC 1 cut(s) 909
BmeT110I CYCGRG 1 cut(s) 1381
BmgT120I GGNCC 1 cut(s) 909
BmiI GGNNCC 1 cut(s) 1169
BmrFI CCNGG 3 cut(s) 281, 1382, 1383
BmsI GCATC 1 cut(s) 1302
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 619
Bpu14I TTCGAA 1 cut(s) 176
BpuEI CTTGAG 4 cut(s) 163, 795, 1585, 1679
BpuMI CCSGG 2 cut(s) 1382, 1383
Bsa29I ATCGAT 3 cut(s) 137, 291, 783
BsaAI YACGTR 1 cut(s) 906
BsaBI GATNNNNATC 2 cut(s) 725, 1668
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 1381, 1382, 1440
Bsc4I CCNNNNNNNGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 1629
Bse8I GATNNNNATC 2 cut(s) 725, 1668
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 3 cut(s) 137, 291, 783
BseDI CCNNGG 3 cut(s) 1381, 1382, 1440
BseGI GGATG 5 cut(s) 197, 269, 465, 1429, 1450
BseJI GATNNNNATC 2 cut(s) 725, 1668
BseLI CCNNNNNNNGG 1 cut(s) 948
BseMI GCAATG 1 cut(s) 1629
BseMII CTCAG 4 cut(s) 413, 534, 633, 1426
BseXI GCAGC 1 cut(s) 1412
Bsh1236I CGCG 1 cut(s) 731
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 2 cut(s) 5, 372
BshVI ATCGAT 3 cut(s) 137, 291, 783
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 1381
BsiSI CCGG 1 cut(s) 1382
BslI CCNNNNNNNGG 1 cut(s) 948
BsmAI GTCTC 5 cut(s) 418, 765, 828, 1628, 1704
BsmI GAATGC 1 cut(s) 1214
BsnI GGCC 2 cut(s) 5, 372
BsoBI CYCGRG 1 cut(s) 1381
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1407I TGTACA 1 cut(s) 1653
BspACI CCGC 3 cut(s) 601, 731, 776
BspANI GGCC 2 cut(s) 5, 372
BspCNI CTCAG 4 cut(s) 414, 535, 632, 1425
BspDI ATCGAT 3 cut(s) 137, 291, 783
BspFNI CGCG 1 cut(s) 731
BspLI GGNNCC 1 cut(s) 1169
BspMAI CTGCAG 1 cut(s) 1402
BspPI GGATC 5 cut(s) 737, 923, 1068, 1477, 1513
BspQI GCTCTTC 1 cut(s) 1188
BspT104I TTCGAA 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 1073
BsrDI GCAATG 1 cut(s) 1629
BsrGI TGTACA 1 cut(s) 1653
BssECI CCNNGG 3 cut(s) 1381, 1382, 1440
BssNI GRCGYC 1 cut(s) 510
BssSI CACGAG 2 cut(s) 215, 1041
BssT1I CCWWGG 1 cut(s) 1440
Bst2BI CACGAG 2 cut(s) 215, 1041
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 7 cut(s) 100, 386, 578, 685, 759, 1513, 1642
Bst6I CTCTTC 2 cut(s) 1188, 1260
BstACI GRCGYC 1 cut(s) 510
BstAFI CTTAAG 1 cut(s) 1073
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 1653
BstBAI YACGTR 1 cut(s) 906
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 117, 887
BstDEI CTNAG 6 cut(s) 202, 248, 422, 543, 619, 1412
BstF5I GGATG 5 cut(s) 197, 269, 465, 1429, 1450
BstFNI CGCG 1 cut(s) 731
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 2 cut(s) 406, 667
BstMAI GTCTC 5 cut(s) 418, 765, 828, 1628, 1704
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 11, 125, 1078
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 1535
BstSCI CCNGG 3 cut(s) 279, 1380, 1381
BstSFI CTRYAG 1 cut(s) 1398
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 1 cut(s) 1412
BstX2I RGATCY 3 cut(s) 742, 928, 1146
BstYI RGATCY 3 cut(s) 742, 928, 1146
Bsu15I ATCGAT 3 cut(s) 137, 291, 783
BsuRI GGCC 2 cut(s) 5, 372
BsuTUI ATCGAT 3 cut(s) 137, 291, 783
BtsCI GGATG 5 cut(s) 197, 269, 465, 1429, 1450
BtsIMutI CAGTG 1 cut(s) 1260
Cac8I GCNNGC 2 cut(s) 117, 887
CaiI CAGNNNCTG 1 cut(s) 1419
CfoI GCGC 2 cut(s) 406, 667
Cfr13I GGNCC 1 cut(s) 909
Cfr9I CCCGGG 1 cut(s) 1381
ClaI ATCGAT 3 cut(s) 137, 291, 783
CseI GACGC 1 cut(s) 1087
Csp6I GTAC 2 cut(s) 1498, 1654
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviQI GTAC 2 cut(s) 1498, 1654
DdeI CTNAG 6 cut(s) 202, 248, 422, 543, 619, 1412
DraI TTTAAA 2 cut(s) 490, 835
DrdI GACNNNNNNGTC 1 cut(s) 432
DseDI GACNNNNNNGTC 1 cut(s) 432
Eam1104I CTCTTC 2 cut(s) 1188, 1260
EarI CTCTTC 2 cut(s) 1188, 1260
EciI GGCGGA 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 1440
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 549
Eco32I GATATC 2 cut(s) 81, 1548
Eco47I GGWCC 1 cut(s) 909
Eco47III AGCGCT 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 2 cut(s) 144, 1284
Eco88I CYCGRG 1 cut(s) 1381
EcoICRI GAGCTC 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 2 cut(s) 81, 1548
EcoT14I CCWWGG 1 cut(s) 1440
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 1440
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 1 cut(s) 1474
FbaI TGATCA 3 cut(s) 720, 1122, 1669
Fnu4HI GCNGC 2 cut(s) 601, 1401
FokI GGATG 5 cut(s) 184, 256, 452, 1436, 1457
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 2 cut(s) 601, 1401
FspBI CTAG 4 cut(s) 470, 1019, 1115, 1551
GlaI GCGC 2 cut(s) 405, 666
GluI GCNGC 2 cut(s) 601, 1401
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 2 cut(s) 5, 372
HapII CCGG 1 cut(s) 1382
HgaI GACGC 1 cut(s) 1087
HhaI GCGC 2 cut(s) 406, 667
Hin1I GRCGYC 1 cut(s) 510
Hin6I GCGC 2 cut(s) 404, 665
HinP1I GCGC 2 cut(s) 404, 665
HindIII AAGCTT 2 cut(s) 537, 1617
HinfI GANTC 4 cut(s) 104, 785, 808, 1585
HpaII CCGG 1 cut(s) 1382
HphI GGTGA 2 cut(s) 398, 572
Hpy166II GTNNAC 3 cut(s) 29, 711, 843
Hpy188I TCNGA 6 cut(s) 78, 274, 544, 933, 1433, 1584
Hpy8I GTNNAC 3 cut(s) 29, 711, 843
Hpy99I CGWCG 2 cut(s) 578, 1688
HpyAV CCTTC 6 cut(s) 183, 359, 362, 472, 551, 868
HpyCH4III ACNGT 7 cut(s) 100, 386, 578, 685, 759, 1513, 1642
HpyCH4IV ACGT 8 cut(s) 31, 71, 150, 258, 495, 510, 698, 905
HpyCH4V TGCA 4 cut(s) 119, 254, 1400, 1634
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 125, 1078
HpyF3I CTNAG 6 cut(s) 202, 248, 422, 543, 619, 1412
HpySE526I ACGT 8 cut(s) 31, 71, 150, 258, 495, 510, 698, 905
Hsp92I GRCGYC 1 cut(s) 510
HspAI GCGC 2 cut(s) 404, 665
Ksp22I TGATCA 3 cut(s) 720, 1122, 1669
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 2 cut(s) 552, 1015
Lsp1109I GCAGC 1 cut(s) 1412
LweI GCATC 1 cut(s) 1302
MaeI CTAG 4 cut(s) 470, 1019, 1115, 1551
MaeII ACGT 8 cut(s) 31, 71, 150, 258, 495, 510, 698, 905
MaeIII GTNAC 5 cut(s) 434, 753, 1247, 1376, 1484
MflI RGATCY 3 cut(s) 742, 928, 1146
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 9 cut(s) 61, 86, 377, 450, 527, 587, 918, 1240, 1407
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 3 cut(s) 92, 956, 1145
MnlI CCTC 6 cut(s) 383, 424, 681, 683, 699, 1089
MslI CAYNNNNRTG 2 cut(s) 716, 835
MspCI CTTAAG 1 cut(s) 1073
MspI CCGG 1 cut(s) 1382
MspR9I CCNGG 3 cut(s) 281, 1382, 1383
Mva1269I GAATGC 1 cut(s) 1214
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 731
MwoI GCNNNNNNNGC 3 cut(s) 11, 125, 1078
NciI CCSGG 2 cut(s) 1382, 1383
NdeI CATATG 1 cut(s) 1474
NlaIV GGNNCC 1 cut(s) 1169
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 1535
NspV TTCGAA 1 cut(s) 176
PceI AGGCCT 1 cut(s) 372
PciI ACATGT 1 cut(s) 1531
PciSI GCTCTTC 1 cut(s) 1188
PctI GAATGC 1 cut(s) 1214
PfeI GAWTC 3 cut(s) 104, 785, 1585
PkrI GCNGC 2 cut(s) 602, 1402
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
Ppu21I YACGTR 1 cut(s) 906
PscI ACATGT 1 cut(s) 1531
Psp124BI GAGCTC 1 cut(s) 549
Psp1406I AACGTT 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 1169
PspPI GGNCC 1 cut(s) 909
PsrI GAACNNNNNNTAC 2 cut(s) 1160, 1192
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 1 cut(s) 1419
PsuI RGATCY 3 cut(s) 742, 928, 1146
RsaI GTAC 2 cut(s) 1499, 1655
RsaNI GTAC 2 cut(s) 1498, 1654
RseI CAYNNNNRTG 2 cut(s) 716, 835
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 1188
SatI GCNGC 2 cut(s) 601, 1401
Sau96I GGNCC 1 cut(s) 909
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 3 cut(s) 281, 1382, 1383
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 1 cut(s) 1302
SfcI CTRYAG 1 cut(s) 1398
SfuI TTCGAA 1 cut(s) 176
SinI GGWCC 1 cut(s) 909
SmaI CCCGGG 1 cut(s) 1383
SmiI ATTTAAAT 1 cut(s) 835
SmiMI CAYNNNNRTG 2 cut(s) 716, 835
SmlI CTYRAG 5 cut(s) 142, 810, 1073, 1600, 1694
SmoI CTYRAG 5 cut(s) 142, 810, 1073, 1600, 1694
Sse9I AATT 9 cut(s) 61, 86, 377, 450, 527, 587, 918, 1240, 1407
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 3 cut(s) 601, 731, 776
SspI AATATT 1 cut(s) 209
SspMI CTAG 4 cut(s) 470, 1019, 1115, 1551
SstI GAGCTC 1 cut(s) 549
StuI AGGCCT 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 279, 1380, 1381
StyI CCWWGG 1 cut(s) 1440
SwaI ATTTAAAT 1 cut(s) 835
TaaI ACNGT 7 cut(s) 100, 386, 578, 685, 759, 1513, 1642
TaiI ACGT 8 cut(s) 34, 74, 153, 261, 498, 513, 701, 908
TasI AATT 9 cut(s) 61, 86, 377, 450, 527, 587, 918, 1240, 1407
TatI WGTACW 2 cut(s) 1497, 1653
TauI GCSGC 1 cut(s) 603
TfiI GAWTC 3 cut(s) 104, 785, 1585
TscAI CASTG 1 cut(s) 1267
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 1400
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 9 cut(s) 176, 624, 668, 929, 1157, 1289, 1292, 1307, 1533
TspGWI ACGGA 2 cut(s) 539, 1145
TspMI CCCGGG 1 cut(s) 1381
TspRI CASTG 1 cut(s) 1267
Vha464I CTTAAG 1 cut(s) 1073
VpaK11BI GGWCC 1 cut(s) 909
XapI RAATTY 3 cut(s) 86, 587, 918
XbaI TCTAGA 2 cut(s) 1114, 1550
XceI RCATGY 1 cut(s) 1535
XmaI CCCGGG 1 cut(s) 1381
XspI CTAG 4 cut(s) 470, 1019, 1115, 1551
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.