Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

4033258 .. 4034259

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCATGCCTAGCAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTAATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATAGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCCGCAAGGTCTATAAAAAGCATGGATGGAACCCCTTGCAATCTTTGAAAAAGACGTGGGCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCTAAGTCAGAAGAGTACTTGAAGAATGGCATTGTTTCTTCTGGGGCAAATGTGGTTCTAGTCCACATTTTTTTTCTCTTGGGTCAAAACATAACCAAACAGAGTGTGGAGTTGTTGAATGACACTCCAACTATTATATCGTCCACAGCAGCAATTCTTCGACTTTGGGACGACTTGGGAAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGATCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGTTGTTCCATTGACGAGGCGCGAGAAAAGACTGTTAATATGATTTCAGATGAATGGAAGAAGCTGAACAGAGAATTGCTCTCTCCAAATCCATTTCCAGCAACATTCACTTCGGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAGCTATGATGGCAACCAATGCCTTCCATCACTTGAAGAGTATATGAAATCAATGTTGTATGAGAGTGTATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

273

Amino Acids

31.06

Weight (kDa)

4.9

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	2 - 218	1.2e-76	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	20 - 218	4.9e-56	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	613
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	2 cut(s)	11, 565
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	196, 274, 364, 460, 779
AjiI	CACGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	5 cut(s)	46, 134, 340, 655, 747
AluI	AGCT	5 cut(s)	46, 134, 340, 655, 747
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	11, 565
AlwNI	CAGNNNCTG	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	155, 337, 340, 491
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	730
AvaII	GGWCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	142, 327, 349, 503
BccI	CCATC	7 cut(s)	65, 138, 246, 539, 548, 746, 778
BciT130I	CCWGG	1 cut(s)	542
BfaI	CTAG	2 cut(s)	11, 401
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	5 cut(s)	156, 229, 338, 341, 492
BlsI	GCNGC	5 cut(s)	157, 230, 339, 342, 493
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	730
BmgBI	CACGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	3 cut(s)	103, 257, 732
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	654, 686
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	257, 538, 550
BseMI	GCAATG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	4 cut(s)	142, 327, 349, 503
Bsh1236I	CGCG	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	2 cut(s)	524, 716
BsmFI	GGGAC	2 cut(s)	524, 716
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	16, 557
BspACI	CCGC	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	103, 257, 732
BspPI	GGATC	2 cut(s)	11, 565
BsrDI	GCAATG	1 cut(s)	304
BssMI	GATC	2 cut(s)	16, 557
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	128, 348, 774
BstAPI	GCANNNNNTGC	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	345, 577
BstF5I	GGATG	3 cut(s)	257, 538, 550
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	2 cut(s)	19, 560
BstMBI	GATC	2 cut(s)	16, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 753, 762
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	4 cut(s)	142, 327, 349, 503
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	257, 538, 550
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	6, 181, 248
CviJI	RGCY	8 cut(s)	46, 134, 200, 228, 340, 655, 707, 747
CviKI_1	RGCY	8 cut(s)	46, 134, 200, 228, 340, 655, 707, 747
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	345, 577
DpnI	GATC	2 cut(s)	18, 559
DpnII	GATC	2 cut(s)	16, 557
Eam1104I	CTCTTC	3 cut(s)	128, 348, 774
EarI	CTCTTC	3 cut(s)	128, 348, 774
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	730
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	3 cut(s)	9, 184, 251
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	524, 716
FatI	CATG	3 cut(s)	5, 180, 247
Fnu4HI	GCNGC	5 cut(s)	156, 229, 338, 341, 492
FokI	GGATG	3 cut(s)	264, 545, 557
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	5 cut(s)	156, 229, 338, 341, 492
FspBI	CTAG	2 cut(s)	11, 401
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	5 cut(s)	156, 229, 338, 341, 492
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	9, 184, 251
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HinfI	GANTC	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	406, 486
Hpy188I	TCNGA	3 cut(s)	31, 352, 640
Hpy8I	GTNNAC	2 cut(s)	406, 486
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	265, 297, 302, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 753, 762
HpyF3I	CTNAG	2 cut(s)	345, 577
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	3 cut(s)	9, 184, 251
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	2 cut(s)	16, 557
LpnPI	CCDG	7 cut(s)	186, 318, 369, 527, 554, 702, 749
Lsp1109I	GCAGC	4 cut(s)	142, 327, 349, 503
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	2 cut(s)	11, 401
MaeII	ACGT	1 cut(s)	281
MalI	GATC	2 cut(s)	18, 559
MboI	GATC	2 cut(s)	16, 557
MboII	GAAGA	8 cut(s)	115, 196, 365, 372, 376, 491, 661, 791
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	495, 665
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	25, 30, 574, 601
Mph1103I	ATGCAT	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	4 cut(s)	108, 138, 627, 714
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	542
MvaI	CCWGG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	3 cut(s)	11, 753, 762
NdeII	GATC	2 cut(s)	16, 557
NlaIII	CATG	3 cut(s)	9, 184, 251
NlaIV	GGNNCC	3 cut(s)	103, 257, 732
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	157, 230, 339, 342, 493
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	103, 257, 732
PspPI	GGNCC	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	108, 138, 627, 714
SatI	GCNGC	5 cut(s)	156, 229, 338, 341, 492
Sau3AI	GATC	2 cut(s)	16, 557
Sau96I	GGNCC	1 cut(s)	730
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	48, 136, 237, 284, 342, 572, 595, 657, 749
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	730
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	2 cut(s)	495, 665
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	2 cut(s)	11, 401
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	502
TasI	AATT	2 cut(s)	495, 665
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	108, 138, 627, 714
Tru9I	TTAA	4 cut(s)	108, 138, 627, 714
TseI	GCWGC	4 cut(s)	155, 337, 340, 491
TspDTI	ATGAA	5 cut(s)	126, 197, 234, 657, 803
VpaK11BI	GGWCC	1 cut(s)	730
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	11, 401
ZrmI	AGTACT	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.