Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

3058541 .. 3059683

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATGACATTTTTGTCCAACATTCTCAGAAGTTGGAGTTATTCAAGCATGTACTGAGAAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATGTGATCGATGTTGTTCAACGGCTAGGCATTGATTATCACTTTCAACAAGAAATCGATGAAATTCTTCACAAGCAGATGAATATAGTGTCTACCCATAATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACAGGGTTACTTCGTGCCTGACGATGTGTTTTACAACTTCAAGGAAAGCAATGGGATGTTCAATCAAGCTTTGGGTGAAGACATTAACGGATTGATGAGCTTATATGAAGCTTCACATCTAGGTTCAGAAGGAGAAGATACACTTGTTGAAGCTGGAAAATATAGTGCCCATCTGCTAAAGACCTCTTTGCCACATCTTGATCATCATCAAGCCAAAATTGTGGGCAATACATTGGGGAATCCTCATCACAAAAGTTTGGCCTCATTCATGGCCAGGAAGTTTTTTGTTACTTCTCAAGGAACCAATACATGGTCAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAGTATGGTCCAGTCTTTGTACCAGAATGAAATTGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAACTGAAGTTTGCAAGAGACCAACCACTGAAATGGTACATTTGGTCCATGGCATGCCTAGCAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCAATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTAGTGAACTCATTCTCTTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

279

Amino Acids

32.19

Weight (kDa)

5.5

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	6 - 145	3.4e-42	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	214 - 279	3.6e-19	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccB7I	CCANNNNNTGG	2 cut(s)	546, 636
AccI	GTMKAC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	156, 553
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	54, 605, 698
AfiI	CCNNNNNNNGG	2 cut(s)	546, 636
AgsI	TTSAA	9 cut(s)	46, 86, 94, 113, 140, 277, 298, 386, 623
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	7 cut(s)	73, 305, 336, 347, 389, 646, 754
AluI	AGCT	7 cut(s)	73, 305, 336, 347, 389, 646, 754
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	2 cut(s)	226, 672
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	2 cut(s)	495, 507
ApoI	RAATTY	2 cut(s)	156, 553
Asp700I	GAANNNNTTC	3 cut(s)	159, 618, 825
AspS9I	GGNCC	2 cut(s)	592, 705
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	592, 705
BaeGI	GKGCMC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	756
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	511
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	2 cut(s)	226, 672
BfaI	CTAG	5 cut(s)	74, 119, 356, 647, 719
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	2 cut(s)	592, 705
BmgT120I	GGNCC	2 cut(s)	592, 705
BmiI	GGNNCC	2 cut(s)	538, 811
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	516
Bsa29I	ATCGAT	2 cut(s)	102, 150
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 636
Bse1I	ACTGG	1 cut(s)	595
Bse3DI	GCAATG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	511
BseCI	ATCGAT	2 cut(s)	102, 150
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	10, 297
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	546, 636
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	41, 47, 221
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	406
BshFI	GGCC	2 cut(s)	497, 509
BshVI	ATCGAT	2 cut(s)	102, 150
BsiHKAI	GWGCWC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	546, 636
BsmAI	GTCTC	2 cut(s)	226, 672
BsnI	GGCC	2 cut(s)	497, 509
Bso31I	GGTCTC	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	406, 756
Bsp143I	GATC	4 cut(s)	99, 196, 436, 724
Bsp19I	CCATGG	1 cut(s)	708
BspANI	GGCC	2 cut(s)	497, 509
BspCNI	CTCAG	3 cut(s)	40, 48, 222
BspDI	ATCGAT	2 cut(s)	102, 150
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	538, 811
BspPI	GGATC	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	672
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	4 cut(s)	99, 196, 436, 724
BssT1I	CCWWGG	1 cut(s)	708
Bst2UI	CCWGG	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	5 cut(s)	27, 56, 230, 657, 815
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	10, 297
BstKTI	GATC	4 cut(s)	102, 199, 439, 727
BstMAI	GTCTC	2 cut(s)	226, 672
BstMBI	GATC	4 cut(s)	99, 196, 436, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	2 cut(s)	53, 717
BstSCI	CCNGG	1 cut(s)	509
BstSLI	GKGCMC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	2 cut(s)	457, 693
BstYI	RGATCY	1 cut(s)	724
Bsu15I	ATCGAT	2 cut(s)	102, 150
BsuRI	GGCC	2 cut(s)	497, 509
BsuTUI	ATCGAT	2 cut(s)	102, 150
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	10, 297
BtsIMutI	CAGTG	1 cut(s)	686
Cac8I	GCNNGC	1 cut(s)	715
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	592, 705
ClaI	ATCGAT	2 cut(s)	102, 150
Csp6I	GTAC	3 cut(s)	53, 604, 697
CviAII	CATG	6 cut(s)	50, 203, 505, 546, 709, 714
CviQI	GTAC	3 cut(s)	53, 604, 697
DdeI	CTNAG	5 cut(s)	27, 56, 230, 657, 815
DpnI	GATC	4 cut(s)	101, 198, 438, 726
DpnII	GATC	4 cut(s)	99, 196, 436, 724
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	836
EarI	CTCTTC	1 cut(s)	836
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	672
Eco47I	GGWCC	2 cut(s)	592, 705
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	6 cut(s)	53, 206, 508, 549, 712, 717
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	6 cut(s)	49, 202, 504, 545, 708, 713
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	185
FokI	GGATG	2 cut(s)	17, 304
FriOI	GRGCYC	1 cut(s)	756
FspBI	CTAG	5 cut(s)	74, 119, 356, 647, 719
HaeIII	GGCC	2 cut(s)	497, 509
Hin1II	CATG	6 cut(s)	53, 206, 508, 549, 712, 717
HindIII	AAGCTT	2 cut(s)	303, 345
HinfI	GANTC	1 cut(s)	475
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	186, 821
Hpy188I	TCNGA	3 cut(s)	30, 364, 739
Hpy188III	TCNNGA	2 cut(s)	203, 434
Hpy8I	GTNNAC	2 cut(s)	186, 821
HpyAV	CCTTC	3 cut(s)	80, 359, 634
HpyCH4V	TGCA	2 cut(s)	212, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	5 cut(s)	27, 56, 230, 657, 815
Hsp92II	CATG	6 cut(s)	53, 206, 508, 549, 712, 717
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	99, 196, 436, 724
LmnI	GCTCC	1 cut(s)	643
LpnPI	CCDG	7 cut(s)	224, 267, 375, 496, 523, 608, 620
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	5 cut(s)	74, 119, 356, 647, 719
MaeIII	GTNAC	2 cut(s)	242, 523
MalI	GATC	4 cut(s)	101, 198, 438, 726
MboI	GATC	4 cut(s)	99, 196, 436, 724
MboII	GAAGA	5 cut(s)	152, 191, 326, 383, 823
MflI	RGATCY	1 cut(s)	724
MhlI	GDGCHC	2 cut(s)	406, 756
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	4 cut(s)	156, 453, 553, 615
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	15, 43
MnlI	CCTC	6 cut(s)	199, 430, 489, 508, 733, 738
Mox20I	TGGCCA	1 cut(s)	509
MroXI	GAANNNNTTC	3 cut(s)	159, 618, 825
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	691
Msp20I	TGGCCA	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	1 cut(s)	719
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	4 cut(s)	99, 196, 436, 724
NlaIII	CATG	6 cut(s)	53, 206, 508, 549, 712, 717
NlaIV	GGNNCC	2 cut(s)	538, 811
NspI	RCATGY	2 cut(s)	53, 717
PaeI	GCATGC	1 cut(s)	717
PagI	TCATGA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdmI	GAANNNNTTC	3 cut(s)	159, 618, 825
PfeI	GAWTC	1 cut(s)	475
PflMI	CCANNNNNTGG	2 cut(s)	546, 636
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	538, 811
PspPI	GGNCC	2 cut(s)	592, 705
PsuI	RGATCY	1 cut(s)	724
RsaI	GTAC	3 cut(s)	54, 605, 698
RsaNI	GTAC	3 cut(s)	53, 604, 697
RseI	CAYNNNNRTG	1 cut(s)	691
SacI	GAGCTC	1 cut(s)	756
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	99, 196, 436, 724
Sau96I	GGNCC	2 cut(s)	592, 705
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	2 cut(s)	406, 756
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	2 cut(s)	592, 705
SmiMI	CAYNNNNRTG	1 cut(s)	691
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	4 cut(s)	156, 453, 553, 615
SspMI	CTAG	5 cut(s)	74, 119, 356, 647, 719
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	708
TaqI	TCGA	3 cut(s)	102, 150, 223
TasI	AATT	4 cut(s)	156, 453, 553, 615
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	693
TspDTI	ATGAA	6 cut(s)	168, 188, 191, 357, 493, 627
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	693
Van91I	CCANNNNNTGG	2 cut(s)	546, 636
VpaK11BI	GGWCC	2 cut(s)	592, 705
XapI	RAATTY	2 cut(s)	156, 553
XceI	RCATGY	2 cut(s)	53, 717
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	3 cut(s)	159, 618, 825
XspI	CTAG	5 cut(s)	74, 119, 356, 647, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.