Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

3435808 .. 3437543

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCAGGATGACATTTTCGTCCAACATTCTCAGAAGTTGGAGCTATTCAAGCATGTAATGAGAAATGTAGCAGACCTAGAAGCCCTTGAAGGTTTGAATATGATCGATGCTGCTCAACGGCTAGGTATCGATTACCACTTTCAACAAGAAATCGACGAAATTCTGCACCAACAGATGAATAGTATATATGTTCATGGTGAACTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACAGGGTTACTTCGTGCCTGATGATATGTTTAACAACTTCAAGGAAAGCAATGGGATGTTCAAGCAAGCTTTGGGTGAAGACATCAAGGGATTGATGAGCTTATATGAAGCTTCACATCTAGGTACAGAAGGAGAAGATACACTTAAATCTTTGCCACATCATGATCATCATCAAGCCAGAATTGTGGGCAATACATTGGGGAATCCTCATCACAAAAGCTTGGCCTCATTCATGGCTAGAAACTTTTTTGTTGCTTCTCAAGGAACCAATACATGGTCAAATTTGCTAAAGGAAGTAGCAAAAACAGATTTCACTATGGTCCAGTCTCTGTACCAGAATGAAATTGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAATTGAAGTTTGCAAGAGACCAACCACTAAAATGGTACATTTGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTCATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATGGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATAAGAAGCATGGATGGAACCCCTTGCAATCTTTGAAAAAGACGTGGTCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTTGCATCTGGGCAGCTGCCAAAGTCAGAAGAGTACTTGAAGAATGACATTGTTTCTTCTGGGGTAAATGTGGTTCTAGTCCACATTTTTTTTCTCTTGGGTCAAAACATAACCAAACAGAGTGTGGAGTTGTTAAATGACACTCCAACTATTATATCATCCACAGCAGCAATTCTTCGACTTTGGGACGACTTGGGAAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGTTCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGCTGTTTCATTGACGAGGTTCAGACGAATGGAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

422

Amino Acids

48.57

Weight (kDa)

5.48

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	6 - 130	5.9e-38	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	203 - 408	6.1e-67	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	231 - 408	9.1e-48	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB7I	CCANNNNNTGG	2 cut(s)	513, 603
AcsI	RAATTY	2 cut(s)	159, 520
AfaI	GTAC	4 cut(s)	364, 572, 665, 992
AfiI	CCNNNNNNNGG	2 cut(s)	513, 603
AjiI	CACGTC	1 cut(s)	915
AjnI	CCWGG	1 cut(s)	1173
AloI	GAACNNNNNNTCC	2 cut(s)	1174, 1206
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	3 cut(s)	229, 570, 639
AlwNI	CAGNNNCTG	2 cut(s)	568, 767
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	6 cut(s)	110, 788, 861, 970, 973, 1124
ApoI	RAATTY	2 cut(s)	159, 520
Asp700I	GAANNNNTTC	2 cut(s)	585, 750
AspS9I	GGNCC	2 cut(s)	559, 796
AsuHPI	GGTGA	2 cut(s)	209, 326
AvaII	GGWCC	2 cut(s)	559, 796
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	6 cut(s)	97, 775, 848, 960, 982, 1136
BccI	CCATC	5 cut(s)	698, 771, 879, 1172, 1181
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	1175
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	3 cut(s)	229, 570, 639
BfaI	CTAG	6 cut(s)	77, 122, 359, 477, 614, 1034
BisI	GCNGC	6 cut(s)	111, 789, 862, 971, 974, 1125
BlsI	GCNGC	6 cut(s)	112, 790, 863, 972, 975, 1126
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	1 cut(s)	1175
Bme18I	GGWCC	2 cut(s)	559, 796
BmgBI	CACGTC	1 cut(s)	915
BmgT120I	GGNCC	2 cut(s)	559, 796
BmiI	GGNNCC	3 cut(s)	505, 736, 890
BmrFI	CCNGG	1 cut(s)	1175
BmsI	GCATC	2 cut(s)	97, 971
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	483
Bsa29I	ATCGAT	2 cut(s)	105, 129
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 603
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	2 cut(s)	295, 937
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	1175
BseCI	ATCGAT	2 cut(s)	105, 129
BseGI	GGATG	6 cut(s)	13, 300, 890, 1115, 1171, 1183
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	513, 603
BseMI	GCAATG	2 cut(s)	295, 937
BseMII	CTCAG	2 cut(s)	44, 224
BseNI	ACTGG	1 cut(s)	562
BseXI	GCAGC	6 cut(s)	97, 775, 848, 960, 982, 1136
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	464
BshVI	ATCGAT	2 cut(s)	105, 129
BsiHKAI	GWGCWC	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	1157
BslI	CCNNNNNNNGG	2 cut(s)	513, 603
BsmAI	GTCTC	3 cut(s)	229, 570, 639
BsmFI	GGGAC	1 cut(s)	1157
BsnI	GGCC	1 cut(s)	464
Bso31I	GGTCTC	1 cut(s)	639
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	102, 403
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	43, 225
BspDI	ATCGAT	2 cut(s)	105, 129
BspHI	TCATGA	3 cut(s)	205, 400, 742
BspLI	GGNNCC	3 cut(s)	505, 736, 890
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	2 cut(s)	295, 937
BsrI	ACTGG	1 cut(s)	562
BssMI	GATC	2 cut(s)	102, 403
Bst2UI	CCWGG	1 cut(s)	1175
Bst6I	CTCTTC	2 cut(s)	761, 981
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	4 cut(s)	30, 233, 624, 1210
BstF5I	GGATG	6 cut(s)	13, 300, 890, 1115, 1171, 1183
BstKTI	GATC	2 cut(s)	105, 406
BstMAI	GTCTC	3 cut(s)	229, 570, 639
BstMBI	GATC	2 cut(s)	102, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	1175
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	1173
BstV1I	GCAGC	6 cut(s)	97, 775, 848, 960, 982, 1136
BstV2I	GAAGAC	1 cut(s)	324
BstXI	CCANNNNNNTGG	2 cut(s)	424, 660
Bsu15I	ATCGAT	2 cut(s)	105, 129
BsuRI	GGCC	1 cut(s)	464
BsuTUI	ATCGAT	2 cut(s)	105, 129
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	6 cut(s)	13, 300, 890, 1115, 1171, 1183
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	2 cut(s)	568, 767
CciI	TCATGA	3 cut(s)	205, 400, 742
Cfr13I	GGNCC	2 cut(s)	559, 796
ClaI	ATCGAT	2 cut(s)	105, 129
Csp6I	GTAC	4 cut(s)	363, 571, 664, 991
CviAII	CATG	9 cut(s)	53, 194, 206, 401, 472, 513, 743, 814, 881
CviQI	GTAC	4 cut(s)	363, 571, 664, 991
DdeI	CTNAG	4 cut(s)	30, 233, 624, 1210
DpnI	GATC	2 cut(s)	104, 405
DpnII	GATC	2 cut(s)	102, 403
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	761, 981
EarI	CTCTTC	2 cut(s)	761, 981
Ecl136II	GAGCTC	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	559, 796
Eco53kI	GAGCTC	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	1173
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	1 cut(s)	681
FaeI	CATG	9 cut(s)	56, 197, 209, 404, 475, 516, 746, 817, 884
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 809, 841
FaqI	GGGAC	1 cut(s)	1157
FatI	CATG	9 cut(s)	52, 193, 205, 400, 471, 512, 742, 813, 880
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	111, 789, 862, 971, 974, 1125
FokI	GGATG	6 cut(s)	20, 307, 897, 1102, 1178, 1190
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	6 cut(s)	111, 789, 862, 971, 974, 1125
FspBI	CTAG	6 cut(s)	77, 122, 359, 477, 614, 1034
GluI	GCNGC	6 cut(s)	111, 789, 862, 971, 974, 1125
HaeIII	GGCC	1 cut(s)	464
Hin1II	CATG	9 cut(s)	56, 197, 209, 404, 475, 516, 746, 817, 884
HindIII	AAGCTT	3 cut(s)	306, 348, 457
HinfI	GANTC	2 cut(s)	442, 922
HphI	GGTGA	2 cut(s)	209, 326
Hpy166II	GTNNAC	2 cut(s)	200, 1039
Hpy188I	TCNGA	3 cut(s)	33, 985, 1248
Hpy188III	TCNNGA	3 cut(s)	206, 401, 743
Hpy8I	GTNNAC	2 cut(s)	200, 1039
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	83, 362, 601, 749
HpyCH4IV	ACGT	1 cut(s)	914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	4 cut(s)	30, 233, 624, 1210
HpySE526I	ACGT	1 cut(s)	914
Hsp92II	CATG	9 cut(s)	56, 197, 209, 404, 475, 516, 746, 817, 884
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	102, 403
LmnI	GCTCC	2 cut(s)	40, 610
Lsp1109I	GCAGC	6 cut(s)	97, 775, 848, 960, 982, 1136
LweI	GCATC	2 cut(s)	97, 971
MaeI	CTAG	6 cut(s)	77, 122, 359, 477, 614, 1034
MaeII	ACGT	1 cut(s)	914
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	104, 405
MboI	GATC	2 cut(s)	102, 403
MboII	GAAGA	8 cut(s)	329, 386, 748, 829, 998, 1005, 1009, 1124
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	7 cut(s)	159, 420, 520, 582, 629, 1128, 1261
MlyI	GAGTC	1 cut(s)	931
MmeI	TCCRAC	3 cut(s)	18, 46, 1127
MnlI	CCTC	5 cut(s)	202, 456, 475, 1207, 1234
Mph1103I	ATGCAT	1 cut(s)	937
MroXI	GAANNNNTTC	2 cut(s)	585, 750
MseI	TTAA	4 cut(s)	270, 384, 771, 1091
MslI	CAYNNNNRTG	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	861, 973
MspR9I	CCNGG	1 cut(s)	1175
MvaI	CCWGG	1 cut(s)	1175
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	102, 403
NlaIII	CATG	9 cut(s)	56, 197, 209, 404, 475, 516, 746, 817, 884
NlaIV	GGNNCC	3 cut(s)	505, 736, 890
NsiI	ATGCAT	1 cut(s)	937
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	3 cut(s)	205, 400, 742
PdmI	GAANNNNTTC	2 cut(s)	585, 750
PfeI	GAWTC	1 cut(s)	442
PflFI	GACNNNGTC	1 cut(s)	916
PflMI	CCANNNNNTGG	2 cut(s)	513, 603
PkrI	GCNGC	6 cut(s)	112, 790, 863, 972, 975, 1126
PleI	GAGTC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	1173
PspGI	CCWGG	1 cut(s)	1173
PspN4I	GGNNCC	3 cut(s)	505, 736, 890
PspPI	GGNCC	2 cut(s)	559, 796
PsrI	GAACNNNNNNTAC	2 cut(s)	1014, 1046
PstNI	CAGNNNCTG	2 cut(s)	568, 767
PsyI	GACNNNGTC	1 cut(s)	916
PvuII	CAGCTG	2 cut(s)	861, 973
RsaI	GTAC	4 cut(s)	364, 572, 665, 992
RsaNI	GTAC	4 cut(s)	363, 571, 664, 991
RseI	CAYNNNNRTG	1 cut(s)	658
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	270, 384, 771, 1091
SatI	GCNGC	6 cut(s)	111, 789, 862, 971, 974, 1125
Sau3AI	GATC	2 cut(s)	102, 403
Sau96I	GGNCC	2 cut(s)	559, 796
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	1 cut(s)	1175
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	97, 971
SinI	GGWCC	2 cut(s)	559, 796
SmiMI	CAYNNNNRTG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	7 cut(s)	159, 420, 520, 582, 629, 1128, 1261
SspMI	CTAG	6 cut(s)	77, 122, 359, 477, 614, 1034
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	1173
TaiI	ACGT	1 cut(s)	917
TaqI	TCGA	6 cut(s)	105, 129, 153, 226, 920, 1135
TasI	AATT	7 cut(s)	159, 420, 520, 582, 629, 1128, 1261
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	4 cut(s)	270, 384, 771, 1091
Tru9I	TTAA	4 cut(s)	270, 384, 771, 1091
TseI	GCWGC	6 cut(s)	110, 788, 861, 970, 973, 1124
Tth111I	GACNNNGTC	1 cut(s)	916
Van91I	CCANNNNNTGG	2 cut(s)	513, 603
VpaK11BI	GGWCC	2 cut(s)	559, 796
XapI	RAATTY	2 cut(s)	159, 520
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1078
XmnI	GAANNNNTTC	2 cut(s)	585, 750
XspI	CTAG	6 cut(s)	77, 122, 359, 477, 614, 1034
ZrmI	AGTACT	1 cut(s)	992
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.