Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

3096836 .. 3099536

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTTCAAGCAAGCTTTGGGTGAAGACATCAAGGGATTGATGAGCGTATATGAAGCTTCACATCTAGCTACAGAAGGAGAAGATACACTTGTTGAAGCTGGAAAATATAGTGCTCATCTGCTAAAGACCTCTTTGCCACATCTTGATCATCATCAGGCGAGAATTGTGGGCAATACATTGGGGAATCCTCATCACAAAAGTTTGGCCTCATTCATGGCCAGGAAGTTTTTTGTTACTTCTCAAGGAACCAATACATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAGTATGGTCCAGTCTTTGTACCAGAATGAAATTGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAACTGAAGTTTGCAAGAGACCAACCACTGAAATGGTACATTTGGTCCATGGCATGCCTAGCAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTAATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATAGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATAAAAAGCATGGATGGAACGCCTTGCAATCTTTGAAAAAGACGTGGGCAAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCAAAGTCAGAAGAGTACTTGAAGAATGGCATTGTTTCTTCTGGGGTAAATGTGGTTCTAGTCCACATTTTTTTTCTCTTGGGTCAAAACATGACCAAACAGAGTGTGGAGTTGTTGAATGACACTCCAACTATTATATCGTCCACAGCAGCAATTCTTCGACTTTGGGACGACTTGGGAAATGCAAACGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGCTGTTCCATTGACGAGGCGAGAGAAAGGACTGCTAATATGATTTCAGACGAATGGAAAAAGCTGAACAGAGAATTGCTCTCTCCAAATCCATTTCCAGCAACATTCAATTCGGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAGCTATGATGGAAACCAATGCCTTCCATCACTTGAAGAGTATATGAAATCAATGTTGTATGAGACTGTATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

412

Amino Acids

46.95

Weight (kDa)

5.53

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	2 - 48	1.3e-09	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	117 - 357	5.4e-85	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	159 - 357	4.3e-54	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	255, 345
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	314, 407, 776
AfiI	CCNNNNNNNGG	2 cut(s)	255, 345
AgsI	TTSAA	9 cut(s)	7, 95, 332, 613, 691, 781, 877, 1117, 1196
AjiI	CACGTC	1 cut(s)	699
AjnI	CCWGG	2 cut(s)	218, 957
Alw21I	GWGCWC	2 cut(s)	115, 465
Alw26I	GTCTC	2 cut(s)	381, 1217
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	204, 216
ApeKI	GCWGC	5 cut(s)	572, 645, 754, 757, 908
ApoI	RAATTY	1 cut(s)	262
Asp700I	GAANNNNTTC	2 cut(s)	327, 534
AspS9I	GGNCC	3 cut(s)	301, 414, 1147
AsuHPI	GGTGA	1 cut(s)	32
AvaII	GGWCC	3 cut(s)	301, 414, 1147
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	115, 465
BbvI	GCAGC	5 cut(s)	559, 632, 744, 766, 920
BccI	CCATC	7 cut(s)	482, 555, 663, 956, 965, 1163, 1195
BciT130I	CCWGG	2 cut(s)	220, 959
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	381, 1217
BfaI	CTAG	4 cut(s)	65, 356, 428, 818
BfmI	CTRYAG	2 cut(s)	69, 576
BisI	GCNGC	5 cut(s)	573, 646, 755, 758, 909
BlsI	GCNGC	5 cut(s)	574, 647, 756, 759, 910
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	2 cut(s)	220, 959
Bme18I	GGWCC	3 cut(s)	301, 414, 1147
BmgBI	CACGTC	1 cut(s)	699
BmgT120I	GGNCC	3 cut(s)	301, 414, 1147
BmiI	GGNNCC	3 cut(s)	247, 520, 1149
BmrFI	CCNGG	2 cut(s)	220, 959
BmsI	GCATC	1 cut(s)	755
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	1071, 1103
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 345
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	220, 959
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	674, 967
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	255, 345
BseMI	GCAATG	1 cut(s)	721
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	559, 632, 744, 766, 920
BshFI	GGCC	2 cut(s)	206, 218
BsiHKAI	GWGCWC	2 cut(s)	115, 465
BslFI	GGGAC	2 cut(s)	941, 1133
BslI	CCNNNNNNNGG	2 cut(s)	255, 345
BsmAI	GTCTC	2 cut(s)	381, 1217
BsmFI	GGGAC	2 cut(s)	941, 1133
BsnI	GGCC	2 cut(s)	206, 218
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	115, 465
Bsp143I	GATC	2 cut(s)	145, 433
Bsp19I	CCATGG	1 cut(s)	417
BspANI	GGCC	2 cut(s)	206, 218
BspLI	GGNNCC	3 cut(s)	247, 520, 1149
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	2 cut(s)	145, 433
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	220, 959
Bst4CI	ACNGT	1 cut(s)	1228
Bst6I	CTCTTC	3 cut(s)	545, 765, 1191
BstC8I	GCNNGC	2 cut(s)	12, 424
BstDEI	CTNAG	2 cut(s)	366, 994
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	674, 967
BstKTI	GATC	2 cut(s)	148, 436
BstMAI	GTCTC	2 cut(s)	381, 1217
BstMBI	GATC	2 cut(s)	145, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	2 cut(s)	220, 959
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	218, 957
BstSFI	CTRYAG	2 cut(s)	69, 576
BstV1I	GCAGC	5 cut(s)	559, 632, 744, 766, 920
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	206, 218
BtgI	CCRYGG	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	674, 967
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	12, 424
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	301, 414, 1147
Csp6I	GTAC	3 cut(s)	313, 406, 775
CviAII	CATG	7 cut(s)	214, 255, 418, 423, 598, 665, 850
CviQI	GTAC	3 cut(s)	313, 406, 775
DdeI	CTNAG	2 cut(s)	366, 994
DpnI	GATC	2 cut(s)	147, 435
DpnII	GATC	2 cut(s)	145, 433
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	545, 765, 1191
EarI	CTCTTC	3 cut(s)	545, 765, 1191
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	301, 414, 1147
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	218, 957
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	7 cut(s)	217, 258, 421, 426, 601, 668, 853
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 593, 625
FaqI	GGGAC	2 cut(s)	941, 1133
FatI	CATG	7 cut(s)	213, 254, 417, 422, 597, 664, 849
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	5 cut(s)	573, 646, 755, 758, 909
FokI	GGATG	2 cut(s)	681, 974
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	5 cut(s)	573, 646, 755, 758, 909
FspBI	CTAG	4 cut(s)	65, 356, 428, 818
GluI	GCNGC	5 cut(s)	573, 646, 755, 758, 909
HaeIII	GGCC	2 cut(s)	206, 218
Hin1II	CATG	7 cut(s)	217, 258, 421, 426, 601, 668, 853
HindIII	AAGCTT	2 cut(s)	12, 54
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	823, 903
Hpy188I	TCNGA	3 cut(s)	448, 769, 1057
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	823, 903
HpyAV	CCTTC	3 cut(s)	68, 343, 1193
HpyCH4III	ACNGT	1 cut(s)	1228
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	6 cut(s)	383, 648, 682, 714, 719, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	2 cut(s)	366, 994
HpySE526I	ACGT	1 cut(s)	698
Hsp92II	CATG	7 cut(s)	217, 258, 421, 426, 601, 668, 853
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	145, 433
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	5 cut(s)	559, 632, 744, 766, 920
LweI	GCATC	1 cut(s)	755
MaeI	CTAG	4 cut(s)	65, 356, 428, 818
MaeII	ACGT	1 cut(s)	698
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	147, 435
MboI	GATC	2 cut(s)	145, 433
MboII	GAAGA	9 cut(s)	35, 92, 532, 613, 782, 789, 793, 908, 1208
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	115, 465
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	6 cut(s)	162, 262, 324, 912, 1082, 1117
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	911
MnlI	CCTC	7 cut(s)	139, 198, 217, 442, 447, 991, 1018
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	327, 534
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	4 cut(s)	260, 525, 555, 1131
MslI	CAYNNNNRTG	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	645, 757
MspR9I	CCNGG	2 cut(s)	220, 959
MvaI	CCWGG	2 cut(s)	220, 959
MwoI	GCNNNNNNNGC	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	2 cut(s)	145, 433
NlaIII	CATG	7 cut(s)	217, 258, 421, 426, 601, 668, 853
NlaIV	GGNNCC	3 cut(s)	247, 520, 1149
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	327, 534
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	2 cut(s)	255, 345
PkrI	GCNGC	5 cut(s)	574, 647, 756, 759, 910
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	218, 957
PspGI	CCWGG	2 cut(s)	218, 957
PspN4I	GGNNCC	3 cut(s)	247, 520, 1149
PspPI	GGNCC	3 cut(s)	301, 414, 1147
PsrI	GAACNNNNNNTAC	2 cut(s)	798, 830
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	2 cut(s)	645, 757
RsaI	GTAC	3 cut(s)	314, 407, 776
RsaNI	GTAC	3 cut(s)	313, 406, 775
RseI	CAYNNNNRTG	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	260, 525, 555, 1131
SatI	GCNGC	5 cut(s)	573, 646, 755, 758, 909
Sau3AI	GATC	2 cut(s)	145, 433
Sau96I	GGNCC	3 cut(s)	301, 414, 1147
ScaI	AGTACT	1 cut(s)	776
ScrFI	CCNGG	2 cut(s)	220, 959
SduI	GDGCHC	2 cut(s)	115, 465
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	2 cut(s)	69, 576
SinI	GGWCC	3 cut(s)	301, 414, 1147
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	6 cut(s)	162, 262, 324, 912, 1082, 1117
SspMI	CTAG	4 cut(s)	65, 356, 428, 818
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	218, 957
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	1228
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	1 cut(s)	919
TasI	AATT	6 cut(s)	162, 262, 324, 912, 1082, 1117
TatI	WGTACW	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	4 cut(s)	260, 525, 555, 1131
Tru9I	TTAA	4 cut(s)	260, 525, 555, 1131
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	5 cut(s)	572, 645, 754, 757, 908
TspDTI	ATGAA	7 cut(s)	66, 202, 336, 543, 614, 651, 1220
TspRI	CASTG	1 cut(s)	402
Van91I	CCANNNNNTGG	2 cut(s)	255, 345
VpaK11BI	GGWCC	3 cut(s)	301, 414, 1147
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	327, 534
XspI	CTAG	4 cut(s)	65, 356, 428, 818
ZrmI	AGTACT	1 cut(s)	776
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.