Rh5BG040900

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
2991870 .. 2995009
3140 bp
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UTR
Exon/CDS
Intron
Rh5BG040900.1

Sequence Viewer

Length: 1224 bp
ATGGTTGATGCCATGCAACGCCTCGGCGTCGCTTATTACTTCCAAGAAGAAATTGATGAAATTTTAGAGAAGCAATACACCAGGTCGTCAGCTTATAATGATAACGACGATGGCAATCATCAACTTCTTGAGGCTTCCCTACGTTTTCGACTATTGAGACAACAAGGCTTCCCTGTAACTCCAGATGCAGAGGCATGTAACAAGATCAAGAACAATGAGAAACTCAAATCCGGACTAATAGCTGGTGATGAAGACGTAAAAGGTTTAGTGGAATTATGTGAAGCATCTCACTTGGGTTTCCACGGAGAAGAAACGCTTGACGAAGCAGGAAAGCTCAGCCGCCAGCTTCTCACTGCCTGGGTCCCCAACAATCTCAAAGATCATCGCGCAGCACTCGTCTCGCACACACTGGAGCATCCTTATCACAAGAGCTTGACAAGATTCATGGCCAAGAACTTTTTGAATAATTTTCAAGGCCAAGAGAAATGGGTTTGTTCTTTACAAGAGCTAGCAAACCTAGAGTTCAACATGGTTGAATCCATAATCCGAAATGAAATCCTACAAGTATCTCGATGGTGGAAAGAGCTAGGTTTGACCAAAGAGTTGAAGTTTGTGAGAGACCAGCCAATTAAATGGTACACATGGCCGATGGCGAGCCTCGTTGATCCACGATTATCAGATGAAAGAATTGAACTCACAAAAGCAATCTCTCTTGTTTACATTATAGATGACATTTTTGACGTTCATGGAACTCTGGATGAACTCATTCACTTCACAGCAGCAGTTGAGAGATGGGATACTGACACAAATGATGAGCTACCGAATTACATGAAAACATGTTTCAAGGCTCTTAATGAGATTACCAATGATATCAGCGAGAGTGTCTACGAAAAGCACGGATGGAACCCTATTGAAACCCTAAGAGAATCGTGGGCAAGATTGTGCAAGGCATTCTTAGTAGAAGCAGAATGGTTTAGACATGGGCAGTTGCCAAACTCTGAGGACTACTTGAAGAATGGGATTATCAGTTCAGGGGTGCCTGCAGTTTTAACCCACGCCTTCTTTATTATTGGTCAAGGTATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACATACCTAGTATCGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAAGCGCCATGGTAATGTGTTCCTATAACCATTTTTGTTGGATATTTTAA

Protein Analysis

407

Amino Acids

46.98

Weight (kDa)

5.1

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 1 - 137 6.3e-29 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 194 - 393 8.2e-67 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 234 - 394 1.1e-39 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 885
AccII CGCG 1 cut(s) 387
AccIII TCCGGA 1 cut(s) 230
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 3 cut(s) 447, 644, 1143
AcsI RAATTY 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 638
AflIII ACRYGT 1 cut(s) 836
AjnI CCWGG 2 cut(s) 80, 356
AloI GAACNNNNNNTCC 2 cut(s) 1012, 1044
AluBI AGCT 8 cut(s) 92, 242, 334, 346, 432, 508, 586, 817
AluI AGCT 8 cut(s) 92, 242, 334, 346, 432, 508, 586, 817
Alw26I GTCTC 3 cut(s) 151, 403, 612
AlwI GGATC 1 cut(s) 659
Aor13HI TCCGGA 1 cut(s) 230
AoxI GGCC 4 cut(s) 447, 475, 644, 1143
ApeKI GCWGC 2 cut(s) 389, 779
ApoI RAATTY 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 2 cut(s) 389, 1181
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 257
AsuNHI GCTAGC 1 cut(s) 508
AvaII GGWCC 1 cut(s) 361
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 1036
BarI GAAGNNNNNNTAC 2 cut(s) 1120, 1152
BbsI GAAGAC 2 cut(s) 258, 1128
BbvI GCAGC 2 cut(s) 401, 791
BccI CCATC 5 cut(s) 104, 567, 643, 786, 894
BceAI ACGGC 1 cut(s) 1158
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 2 cut(s) 82, 358
BciVI GTATCC 1 cut(s) 790
BcoDI GTCTC 3 cut(s) 151, 403, 612
BfaI CTAG 4 cut(s) 509, 518, 587, 1125
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 1 cut(s) 1182
BfuI GTATCC 1 cut(s) 790
BglII AGATCT 1 cut(s) 1099
BisI GCNGC 3 cut(s) 340, 390, 780
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 3 cut(s) 341, 391, 781
Bme1390I CCNGG 2 cut(s) 82, 358
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 4 cut(s) 362, 363, 905, 1038
BmrFI CCNGG 2 cut(s) 82, 358
BmsI GCATC 3 cut(s) 175, 293, 424
BmtI GCTAGC 1 cut(s) 512
BpiI GAAGAC 2 cut(s) 258, 1128
BpmI CTGGAG 2 cut(s) 165, 431
Bpu1102I GCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 5 cut(s) 22, 301, 357, 1086, 1182
BsaWI WCCGGW 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 414
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 230
BseBI CCWGG 2 cut(s) 82, 358
BseDI CCNNGG 5 cut(s) 22, 301, 357, 1086, 1182
BseGI GGATG 4 cut(s) 415, 763, 905, 1171
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 2 cut(s) 349, 990
BseNI ACTGG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 401, 791
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 449, 477, 646, 1145
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 347
BsmAI GTCTC 3 cut(s) 151, 403, 612
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 950
BsnI GGCC 4 cut(s) 449, 477, 646, 1145
Bso31I GGTCTC 1 cut(s) 612
Bsp13I TCCGGA 1 cut(s) 230
Bsp143I GATC 4 cut(s) 204, 379, 664, 1099
Bsp1720I GCTNAGC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 1 cut(s) 340
BspANI GGCC 4 cut(s) 449, 477, 646, 1145
BspCNI CTCAG 2 cut(s) 348, 991
BspEI TCCGGA 1 cut(s) 230
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 4 cut(s) 362, 363, 905, 1038
BspMAI CTGCAG 1 cut(s) 1045
BspOI GCTAGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 612
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 5 cut(s) 22, 301, 357, 1086, 1182
BssMI GATC 4 cut(s) 204, 379, 664, 1099
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 1086, 1182
Bst2UI CCWGG 2 cut(s) 82, 358
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 344, 510, 655, 1041
BstDEI CTNAG 4 cut(s) 335, 920, 955, 999
BstDSI CCRYGG 2 cut(s) 301, 1182
BstF5I GGATG 4 cut(s) 415, 763, 905, 1171
BstFNI CGCG 1 cut(s) 387
BstH2I RGCGCY 1 cut(s) 1182
BstHHI GCGC 2 cut(s) 389, 1181
BstKTI GATC 4 cut(s) 207, 382, 667, 1102
BstMAI GTCTC 3 cut(s) 151, 403, 612
BstMBI GATC 4 cut(s) 204, 379, 664, 1099
BstNI CCWGG 2 cut(s) 82, 358
BstNSI RCATGY 2 cut(s) 198, 840
BstSCI CCNGG 2 cut(s) 80, 356
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 401, 791
BstV2I GAAGAC 2 cut(s) 258, 1128
BstX2I RGATCY 1 cut(s) 1099
BstXI CCANNNNNNTGG 1 cut(s) 633
BstYI RGATCY 1 cut(s) 1099
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 4 cut(s) 449, 477, 646, 1145
BtgI CCRYGG 2 cut(s) 301, 1182
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 4 cut(s) 415, 763, 905, 1171
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 407
Cac8I GCNNGC 4 cut(s) 344, 510, 655, 1041
CfoI GCGC 2 cut(s) 389, 1181
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 16
CsiI ACCWGGT 1 cut(s) 80
Csp6I GTAC 1 cut(s) 637
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 4 cut(s) 335, 920, 955, 999
DpnI GATC 4 cut(s) 206, 381, 666, 1101
DpnII GATC 4 cut(s) 204, 379, 664, 1099
EaeI YGGCCR 3 cut(s) 447, 644, 1143
Eco130I CCWWGG 2 cut(s) 1086, 1182
Eco31I GGTCTC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 80, 356
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 2 cut(s) 1086, 1182
ErhI CCWWGG 2 cut(s) 1086, 1182
Esp3I CGTCTC 1 cut(s) 403
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 938, 970
FaqI GGGAC 1 cut(s) 347
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 3 cut(s) 340, 390, 780
FokI GGATG 4 cut(s) 402, 770, 912, 1178
Fsp4HI GCNGC 3 cut(s) 340, 390, 780
FspBI CTAG 4 cut(s) 509, 518, 587, 1125
GlaI GCGC 2 cut(s) 388, 1180
GluI GCNGC 3 cut(s) 340, 390, 780
GsuI CTGGAG 2 cut(s) 165, 431
HaeII RGCGCY 1 cut(s) 1182
HaeIII GGCC 4 cut(s) 449, 477, 646, 1145
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 389, 1181
Hin1I GRCGYC 1 cut(s) 27
Hin6I GCGC 2 cut(s) 387, 1179
HinP1I GCGC 2 cut(s) 387, 1179
HinfI GANTC 3 cut(s) 441, 536, 926
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 639, 718, 886
Hpy188I TCNGA 3 cut(s) 548, 679, 1000
Hpy188III TCNNGA 6 cut(s) 128, 182, 208, 231, 570, 755
Hpy8I GTNNAC 3 cut(s) 639, 718, 886
Hpy99I CGWCG 2 cut(s) 32, 110
HpyAV CCTTC 1 cut(s) 1069
HpyCH4IV ACGT 3 cut(s) 142, 255, 741
HpyCH4V TGCA 4 cut(s) 16, 188, 945, 1043
HpyF3I CTNAG 4 cut(s) 335, 920, 955, 999
HpySE526I ACGT 3 cut(s) 142, 255, 741
Hsp92I GRCGYC 1 cut(s) 27
HspAI GCGC 2 cut(s) 387, 1179
KflI GGGWCCC 1 cut(s) 361
Kpn2I TCCGGA 1 cut(s) 230
Kzo9I GATC 4 cut(s) 204, 379, 664, 1099
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 401, 791
LweI GCATC 3 cut(s) 175, 293, 424
MabI ACCWGGT 1 cut(s) 80
MaeI CTAG 4 cut(s) 509, 518, 587, 1125
MaeII ACGT 3 cut(s) 142, 255, 741
MaeIII GTNAC 2 cut(s) 175, 197
MalI GATC 4 cut(s) 206, 381, 666, 1101
MboI GATC 4 cut(s) 204, 379, 664, 1099
MboII GAAGA 5 cut(s) 59, 263, 320, 1024, 1128
MflI RGATCY 1 cut(s) 1099
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 7 cut(s) 51, 60, 272, 466, 627, 687, 823
MluNI TGGCCA 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 1193
MnlI CCTC 5 cut(s) 32, 124, 184, 668, 994
Mox20I TGGCCA 1 cut(s) 449
MroI TCCGGA 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 765
MscI TGGCCA 1 cut(s) 449
MseI TTAA 4 cut(s) 630, 852, 1049, 1222
MslI CAYNNNNRTG 1 cut(s) 1187
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 82, 358
Mva1269I GAATGC 1 cut(s) 950
MvaI CCWGG 2 cut(s) 82, 358
MvnI CGCG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 4 cut(s) 204, 379, 664, 1099
NheI GCTAGC 1 cut(s) 508
NlaIV GGNNCC 4 cut(s) 362, 363, 905, 1038
NspI RCATGY 2 cut(s) 198, 840
PciI ACATGT 1 cut(s) 836
PctI GAATGC 1 cut(s) 950
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 441, 536, 926
PkrI GCNGC 3 cut(s) 341, 391, 781
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 836
PsiI TTATAA 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 80, 356
PspGI CCWGG 2 cut(s) 80, 356
PspN4I GGNNCC 4 cut(s) 362, 363, 905, 1038
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
PstI CTGCAG 1 cut(s) 1045
PsuI RGATCY 1 cut(s) 1099
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
RseI CAYNNNNRTG 1 cut(s) 1187
SaqAI TTAA 4 cut(s) 630, 852, 1049, 1222
SatI GCNGC 3 cut(s) 340, 390, 780
Sau3AI GATC 4 cut(s) 204, 379, 664, 1099
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 82, 358
SexAI ACCWGGT 1 cut(s) 80
SfaNI GCATC 3 cut(s) 175, 293, 424
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 7 cut(s) 51, 60, 272, 466, 627, 687, 823
SsiI CCGC 1 cut(s) 340
SspMI CTAG 4 cut(s) 509, 518, 587, 1125
StyD4I CCNGG 2 cut(s) 80, 356
StyI CCWWGG 2 cut(s) 1086, 1182
TaiI ACGT 3 cut(s) 145, 258, 744
TaqI TCGA 2 cut(s) 148, 571
TasI AATT 7 cut(s) 51, 60, 272, 466, 627, 687, 823
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 3 cut(s) 441, 536, 926
Tru1I TTAA 4 cut(s) 630, 852, 1049, 1222
Tru9I TTAA 4 cut(s) 630, 852, 1049, 1222
TscAI CASTG 2 cut(s) 358, 414
TseI GCWGC 2 cut(s) 389, 779
TspDTI ATGAA 8 cut(s) 72, 264, 433, 567, 696, 734, 774, 845
TspGWI ACGGA 2 cut(s) 318, 912
TspRI CASTG 2 cut(s) 358, 414
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 60
XceI RCATGY 2 cut(s) 198, 840
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 4 cut(s) 509, 518, 587, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.