FvH4_3g03081

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1649467 .. 1654658
5192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03081.t1

Sequence Viewer

Length: 1743 bp
ATGGCATCGTCTTCTTGGGCCTTCTTTAAAGTATTCAATCCCCAAATTGCTCCAAAAAGTATCTCACATATTGGCCAGTCTGACCTCATGCAGCTTACACATAAGAAGCAGCTGCCTACTTTTCAAAGACGGGGCATTGCCGAAGATAGCTTGCTTCCCAGTTCTACTACTCCCATAAAGCCGATGCACGTTGAAACCAAGCATACTAGAACTATGGGTGACATTTTTGTCCAACATTCTCAGAAGTTGGAACTATTCAGAAATGTCTTGAGGAATGCAGCAGAGCTAGATGCCCTTGAAGGTTTGAATATGATCGATGCCGTTCAAAGGCTAGGCATCGATTACCACTTTCAACGAGAAATCGACGAAATTCTGCACAAGCAAATGGGTATTGTATCTGCCTGTGATGATCTTTATGAGGTTGCACTTCGTTTTCGACTACTGAGACAACATGGTTACTTCGTGCCTGAAGATGTGTTTAACAACTTCAAGGACAGCAAAGGAACTTTCAAGCAAGTTCTGGGTGAAGACATCAAGGGATTGATGAGCTTATACGAAGCTTCGCAGCTAGGTACAGAAGGAGAAGATACACTTGTTGAAGCTGAAAAGTTTAGTGGCCATCTGCTAAAGACTTCTCTGTCACATCTTGATCGTCATCGAGCCAGAATTGTTGGAAATACATTGAGGAATCCTCATCACAAAAGCTTGGCCTCATTCATGGCCAGGAACTTTTTCGTTACTTCTCAAGCCACCAATTCATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAATATGGTCCGGTCTGTGCACCAGAAAGAAATAGTTCAAATTTCCAAATGGTGGAAGGAGCTTGGATTGGTTAAGGAACTGAAGTTTGCAAGAGATCAACCACTGAAATGGTACACTTGGTCCATGGCAGGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCTTTTGTCTATTTGATAGATGACATTTTCGATGTTTATGGAACCCTTGATGACCTCATTCTCTTCACAGAAGCTGTTAATAGATGGGAAATTACTGCTATAGACCACTTACCAGACTATATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAATTCAGCTGCAAGGTCTATCAGAAGCATGGATGGAACCCCTTACGATCTTTGAAAATTTCGTGGGCGAGTCTTTGCAATGCGTTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCGAAGTCAGAAGAGTACTTGAAGAACGGCATCGTTTCTTCTGGGGTAAATGTGGGTCTAGTCCACATGTTTTTTCTCTTGGGTCAGAACATAACCAGAAAGAGTGTGGAGTTGTTGAATGAAACTCCAGCCATGATATCGTCCTCAGCAGCAATTCTTCGACTCTGGGACGATTTAGGCAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATGAAGGCTGTTCCATTGAGGAGGCACGAGAAAAGACGATTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAACTGCTCTCTCCAAATCCATTTCCAGCAACATTCACATCGGCTTCTCTTAATCTCGCAAGAATGATCCCCTTGATGTATAGCTACGATGGCAACCAATCCCTTCCATCTCTTAAAGAGTATATGAAACTGATGTTGTATGAGACTGTATCAATGTAA

Protein Analysis

581

Amino Acids

66.51

Weight (kDa)

6.25

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 71 - 216 1.5e-45 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 285 - 525 1.1e-80 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 327 - 525 3.2e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 227, 637
AccB7I CCANNNNNTGG 2 cut(s) 759, 849
AclWI GGATC 2 cut(s) 932, 1645
AcoI YGGCCR 3 cut(s) 73, 616, 720
AcsI RAATTY 5 cut(s) 369, 766, 837, 1142, 1197
AcuI CTGAAG 2 cut(s) 489, 899
AfaI GTAC 3 cut(s) 574, 911, 1280
AfiI CCNNNNNNNGG 3 cut(s) 327, 759, 849
AflIII ACRYGT 1 cut(s) 1329
AjnI CCWGG 2 cut(s) 722, 1461
Alw21I GWGCWC 2 cut(s) 819, 969
Alw26I GTCTC 2 cut(s) 439, 1721
Alw44I GTGCAC 1 cut(s) 815
AlwI GGATC 2 cut(s) 932, 1645
AlwNI CAGNNNCTG 1 cut(s) 1055
AoxI GGCC 6 cut(s) 18, 73, 616, 708, 720, 928
ApaLI GTGCAC 1 cut(s) 815
ApeKI GCWGC 9 cut(s) 91, 109, 112, 278, 565, 1149, 1258, 1261, 1412
ApoI RAATTY 5 cut(s) 369, 766, 837, 1142, 1197
AseI ATTAAT 1 cut(s) 1548
Asp700I GAANNNNTTC 2 cut(s) 731, 831
AspS9I GGNCC 3 cut(s) 18, 805, 918
AsuHPI GGTGA 2 cut(s) 230, 536
AvaII GGWCC 2 cut(s) 805, 918
BaeGI GKGCMC 1 cut(s) 819
BaeI ACNNNNGTAYC 2 cut(s) 579, 612
BalI TGGCCA 3 cut(s) 75, 618, 722
BanII GRGCYC 1 cut(s) 969
BauI CACGAG 1 cut(s) 1533
BbsI GAAGAC 2 cut(s) 3, 534
Bbv12I GWGCWC 2 cut(s) 819, 969
BbvCI CCTCAGC 1 cut(s) 1408
BbvI GCAGC 9 cut(s) 99, 103, 121, 290, 577, 1136, 1248, 1270, 1424
BccI CCATC 8 cut(s) 627, 986, 1059, 1167, 1460, 1469, 1667, 1699
BceAI ACGGC 2 cut(s) 305, 1306
BciT130I CCWGG 2 cut(s) 724, 1463
BcoDI GTCTC 2 cut(s) 439, 1721
BfaI CTAG 5 cut(s) 207, 287, 332, 569, 1322
BfmI CTRYAG 1 cut(s) 1080
BisI GCNGC 9 cut(s) 92, 110, 113, 279, 566, 1150, 1259, 1262, 1413
BlsI GCNGC 9 cut(s) 93, 111, 114, 280, 567, 1151, 1260, 1263, 1414
BmcAI AGTACT 1 cut(s) 1280
Bme1390I CCNGG 2 cut(s) 724, 1463
Bme18I GGWCC 2 cut(s) 805, 918
BmgT120I GGNCC 3 cut(s) 18, 805, 918
BmiI GGNNCC 2 cut(s) 1024, 1178
BmrFI CCNGG 2 cut(s) 724, 1463
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 7 cut(s) 14, 174, 280, 307, 345, 1259, 1302
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 3, 534
BplI GAGNNNNNCTC 4 cut(s) 676, 708, 1575, 1607
BpmI CTGGAG 1 cut(s) 1374
Bpu10I CCTNAGC 1 cut(s) 1408
BpuEI CTTGAG 2 cut(s) 289, 729
Bsa29I ATCGAT 2 cut(s) 315, 339
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 921
BsaWI WCCGGW 1 cut(s) 807
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 759, 849
Bse1I ACTGG 2 cut(s) 76, 159
Bse3DI GCAATG 2 cut(s) 135, 1225
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 2 cut(s) 724, 1463
BseCI ATCGAT 2 cut(s) 315, 339
BseDI CCNNGG 1 cut(s) 921
BseGI GGATG 3 cut(s) 1178, 1459, 1471
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 3 cut(s) 327, 759, 849
BseMI GCAATG 2 cut(s) 135, 1225
BseMII CTCAG 3 cut(s) 254, 434, 1422
BseNI ACTGG 2 cut(s) 76, 159
BseRI GAGGAG 2 cut(s) 968, 1541
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 9 cut(s) 99, 103, 121, 290, 577, 1136, 1248, 1270, 1424
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 6 cut(s) 20, 75, 618, 710, 722, 930
BshVI ATCGAT 2 cut(s) 315, 339
BsiHKAI GWGCWC 2 cut(s) 819, 969
BsiSI CCGG 1 cut(s) 808
BslFI GGGAC 1 cut(s) 1445
BslI CCNNNNNNNGG 3 cut(s) 327, 759, 849
BsmAI GTCTC 2 cut(s) 439, 1721
BsmFI GGGAC 1 cut(s) 1445
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 6 cut(s) 20, 75, 618, 710, 722, 930
Bsp1286I GDGCHC 2 cut(s) 819, 969
Bsp143I GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
Bsp19I CCATGG 1 cut(s) 921
BspANI GGCC 6 cut(s) 20, 75, 618, 710, 722, 930
BspCNI CTCAG 3 cut(s) 253, 435, 1421
BspDI ATCGAT 2 cut(s) 315, 339
BspLI GGNNCC 2 cut(s) 1024, 1178
BspPI GGATC 2 cut(s) 932, 1645
BsrDI GCAATG 2 cut(s) 135, 1225
BsrI ACTGG 2 cut(s) 76, 159
BssECI CCNNGG 1 cut(s) 921
BssMI GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
BssSI CACGAG 1 cut(s) 1533
BssT1I CCWWGG 1 cut(s) 921
Bst2BI CACGAG 1 cut(s) 1533
Bst2UI CCWGG 2 cut(s) 724, 1463
Bst4CI ACNGT 1 cut(s) 1732
Bst6I CTCTTC 2 cut(s) 1049, 1269
BstC8I GCNNGC 2 cut(s) 152, 928
BstDEI CTNAG 4 cut(s) 240, 443, 1408, 1498
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 3 cut(s) 1178, 1459, 1471
BstKTI GATC 7 cut(s) 315, 412, 652, 895, 940, 1190, 1653
BstMAI GTCTC 2 cut(s) 439, 1721
BstMBI GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
BstMWI GCNNNNNNNGC 1 cut(s) 1674
BstNI CCWGG 2 cut(s) 724, 1463
BstNSI RCATGY 1 cut(s) 1333
BstSCI CCNGG 2 cut(s) 722, 1461
BstSFI CTRYAG 1 cut(s) 1080
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 9 cut(s) 99, 103, 121, 290, 577, 1136, 1248, 1270, 1424
BstV2I GAAGAC 2 cut(s) 3, 534
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 906
BstYI RGATCY 1 cut(s) 937
Bsu15I ATCGAT 2 cut(s) 315, 339
BsuRI GGCC 6 cut(s) 20, 75, 618, 710, 722, 930
BsuTUI ATCGAT 2 cut(s) 315, 339
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 3 cut(s) 1178, 1459, 1471
BtsI GCAGTG 1 cut(s) 1450
BtsIMutI CAGTG 2 cut(s) 899, 1450
Cac8I GCNNGC 2 cut(s) 152, 928
CaiI CAGNNNCTG 1 cut(s) 1055
Cfr13I GGNCC 3 cut(s) 18, 805, 918
ClaI ATCGAT 2 cut(s) 315, 339
Csp6I GTAC 3 cut(s) 573, 910, 1279
CviAII CATG 9 cut(s) 88, 452, 718, 759, 922, 1169, 1330, 1396, 1508
CviQI GTAC 3 cut(s) 573, 910, 1279
DdeI CTNAG 4 cut(s) 240, 443, 1408, 1498
DpnI GATC 7 cut(s) 314, 411, 651, 894, 939, 1189, 1652
DpnII GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
DraI TTTAAA 1 cut(s) 28
DrdI GACNNNNNNGTC 2 cut(s) 227, 637
DseDI GACNNNNNNGTC 2 cut(s) 227, 637
EaeI YGGCCR 3 cut(s) 73, 616, 720
Eam1104I CTCTTC 2 cut(s) 1049, 1269
EarI CTCTTC 2 cut(s) 1049, 1269
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 1 cut(s) 921
Eco147I AGGCCT 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 969
Eco32I GATATC 1 cut(s) 1401
Eco47I GGWCC 2 cut(s) 805, 918
Eco53kI GAGCTC 1 cut(s) 967
Eco57I CTGAAG 2 cut(s) 489, 899
EcoICRI GAGCTC 1 cut(s) 967
EcoRI GAATTC 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 722, 1461
EcoRV GATATC 1 cut(s) 1401
EcoT14I CCWWGG 1 cut(s) 921
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 1 cut(s) 921
FaeI CATG 9 cut(s) 91, 455, 721, 762, 925, 1172, 1333, 1399, 1511
FalI AAGNNNNNCTT 4 cut(s) 576, 608, 1097, 1129
FaqI GGGAC 1 cut(s) 1445
FatI CATG 9 cut(s) 87, 451, 717, 758, 921, 1168, 1329, 1395, 1507
Fnu4HI GCNGC 9 cut(s) 92, 110, 113, 279, 566, 1150, 1259, 1262, 1413
FokI GGATG 3 cut(s) 1185, 1466, 1478
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 9 cut(s) 92, 110, 113, 279, 566, 1150, 1259, 1262, 1413
FspBI CTAG 5 cut(s) 207, 287, 332, 569, 1322
GluI GCNGC 9 cut(s) 92, 110, 113, 279, 566, 1150, 1259, 1262, 1413
GsuI CTGGAG 1 cut(s) 1374
HaeIII GGCC 6 cut(s) 20, 75, 618, 710, 722, 930
HapII CCGG 1 cut(s) 808
Hin1II CATG 9 cut(s) 91, 455, 721, 762, 925, 1172, 1333, 1399, 1511
HindIII AAGCTT 2 cut(s) 558, 703
HinfI GANTC 3 cut(s) 688, 1210, 1425
HpaII CCGG 1 cut(s) 808
HphI GGTGA 2 cut(s) 230, 536
Hpy166II GTNNAC 3 cut(s) 817, 912, 1327
Hpy188I TCNGA 8 cut(s) 82, 243, 260, 952, 1164, 1273, 1350, 1561
Hpy188III TCNNGA 2 cut(s) 268, 647
Hpy8I GTNNAC 3 cut(s) 817, 912, 1327
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 6 cut(s) 31, 293, 572, 847, 1505, 1697
HpyCH4III ACNGT 1 cut(s) 1732
HpyCH4IV ACGT 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 1674
HpyF3I CTNAG 4 cut(s) 240, 443, 1408, 1498
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 9 cut(s) 91, 455, 721, 762, 925, 1172, 1333, 1399, 1511
Kzo9I GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
LmnI GCTCC 2 cut(s) 55, 856
Lsp1109I GCAGC 9 cut(s) 99, 103, 121, 290, 577, 1136, 1248, 1270, 1424
LweI GCATC 7 cut(s) 14, 174, 280, 307, 345, 1259, 1302
MaeI CTAG 5 cut(s) 207, 287, 332, 569, 1322
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 4 cut(s) 218, 455, 639, 736
MalI GATC 7 cut(s) 314, 411, 651, 894, 939, 1189, 1652
MboI GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 819, 969
MlsI TGGCCA 3 cut(s) 75, 618, 722
MluNI TGGCCA 3 cut(s) 75, 618, 722
MlyI GAGTC 2 cut(s) 1219, 1419
MmeI TCCRAC 3 cut(s) 228, 256, 652
Mox20I TGGCCA 3 cut(s) 75, 618, 722
MroXI GAANNNNTTC 2 cut(s) 731, 831
MscI TGGCCA 3 cut(s) 75, 618, 722
MseI TTAA 8 cut(s) 27, 480, 764, 870, 1059, 1548, 1635, 1698
MslI CAYNNNNRTG 1 cut(s) 904
Msp20I TGGCCA 3 cut(s) 75, 618, 722
MspA1I CMGCKG 3 cut(s) 112, 1149, 1261
MspI CCGG 1 cut(s) 808
MspR9I CCNGG 2 cut(s) 724, 1463
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 2 cut(s) 724, 1463
MwoI GCNNNNNNNGC 1 cut(s) 1674
NcoI CCATGG 1 cut(s) 921
NdeII GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
NlaIII CATG 9 cut(s) 91, 455, 721, 762, 925, 1172, 1333, 1399, 1511
NlaIV GGNNCC 2 cut(s) 1024, 1178
NmuCI GTSAC 2 cut(s) 218, 639
NspI RCATGY 1 cut(s) 1333
PceI AGGCCT 1 cut(s) 930
PciI ACATGT 1 cut(s) 1329
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 2 cut(s) 731, 831
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 2 cut(s) 759, 849
PkrI GCNGC 9 cut(s) 93, 111, 114, 280, 567, 1151, 1260, 1263, 1414
PleI GAGTC 2 cut(s) 1218, 1419
PpsI GAGTC 2 cut(s) 1218, 1419
PscI ACATGT 1 cut(s) 1329
PshBI ATTAAT 1 cut(s) 1548
Psp124BI GAGCTC 1 cut(s) 969
Psp6I CCWGG 2 cut(s) 722, 1461
PspGI CCWGG 2 cut(s) 722, 1461
PspN4I GGNNCC 2 cut(s) 1024, 1178
PspPI GGNCC 3 cut(s) 18, 805, 918
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 1 cut(s) 937
PvuII CAGCTG 3 cut(s) 112, 1149, 1261
RsaI GTAC 3 cut(s) 574, 911, 1280
RsaNI GTAC 3 cut(s) 573, 910, 1279
RseI CAYNNNNRTG 1 cut(s) 904
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 8 cut(s) 27, 480, 764, 870, 1059, 1548, 1635, 1698
SatI GCNGC 9 cut(s) 92, 110, 113, 279, 566, 1150, 1259, 1262, 1413
Sau3AI GATC 7 cut(s) 312, 409, 649, 892, 937, 1187, 1650
Sau96I GGNCC 3 cut(s) 18, 805, 918
ScaI AGTACT 1 cut(s) 1280
SchI GAGTC 2 cut(s) 1219, 1419
ScrFI CCNGG 2 cut(s) 724, 1463
SduI GDGCHC 2 cut(s) 819, 969
SfaNI GCATC 7 cut(s) 14, 174, 280, 307, 345, 1259, 1302
SfcI CTRYAG 1 cut(s) 1080
SinI GGWCC 2 cut(s) 805, 918
SmiMI CAYNNNNRTG 1 cut(s) 904
SmlI CTYRAG 2 cut(s) 268, 744
SmoI CTYRAG 2 cut(s) 268, 744
SseBI AGGCCT 1 cut(s) 930
SspMI CTAG 5 cut(s) 207, 287, 332, 569, 1322
SstI GAGCTC 1 cut(s) 969
StuI AGGCCT 1 cut(s) 930
StyD4I CCNGG 2 cut(s) 722, 1461
StyI CCWWGG 1 cut(s) 921
TaaI ACNGT 1 cut(s) 1732
TaiI ACGT 1 cut(s) 192
TaqI TCGA 7 cut(s) 315, 339, 363, 436, 658, 1011, 1423
TatI WGTACW 1 cut(s) 1278
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 8 cut(s) 27, 480, 764, 870, 1059, 1548, 1635, 1698
Tru9I TTAA 8 cut(s) 27, 480, 764, 870, 1059, 1548, 1635, 1698
TscAI CASTG 2 cut(s) 906, 1450
TseFI GTSAC 2 cut(s) 218, 639
TseI GCWGC 9 cut(s) 91, 109, 112, 278, 565, 1149, 1258, 1261, 1412
Tsp45I GTSAC 2 cut(s) 218, 639
TspDTI ATGAA 8 cut(s) 706, 747, 1118, 1155, 1398, 1524, 1578, 1724
TspRI CASTG 2 cut(s) 906, 1450
Van91I CCANNNNNTGG 2 cut(s) 759, 849
VneI GTGCAC 1 cut(s) 815
VpaK11BI GGWCC 2 cut(s) 805, 918
VspI ATTAAT 1 cut(s) 1548
XapI RAATTY 5 cut(s) 369, 766, 837, 1142, 1197
XceI RCATGY 1 cut(s) 1333
XcmI CCANNNNNNNNNTGG 1 cut(s) 1366
XmnI GAANNNNTTC 2 cut(s) 731, 831
XspI CTAG 5 cut(s) 207, 287, 332, 569, 1322
ZrmI AGTACT 1 cut(s) 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.