MD10G1309800.v1.1

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
39454399 .. 39456335
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1309800.v1.1.491

Sequence Viewer

Length: 417 bp
ATGCGAAATTGGTGCTATAGAGCACTTAAACCGGACTACATGAACATATATTTCAAGGCTCTTTACCATATGACGAATGAAATCAGCTGCAAATTCTATCAAAAGCATGGGCGATACCCATTACATTCGTTTAAGAAGTGGGGGGTTCTGTGCAATGCATTTTTAGCAGAAGCAAAACGGTTCAAATCCGGGCACTTGCCGAAAGCGGAAGACTACTTAAAGAATGGTATTCATGAGATTAACCCTTCTTCTGGGGTTAATGCGATGATGGTGCATAGATTCTTTCTCTTGGGTCAAAGTATAACCAAAGAAAGCGTGGAGCCGTTGAATGGAACTCTAGAAATTGCATCTTCCACAGCAGCAATTCTTCGGCTTTGGGAAGATTTGGGAAGCGCCGAGGTGATTATATATAATTAG

Protein Analysis

139

Amino Acids

15.94

Weight (kDa)

9.13

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 10 - 133 5.2e-25 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 10 - 133 3.8e-18 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 251, 329
AgsI TTSAA 3 cut(s) 55, 184, 328
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 87, 359
ApoI RAATTY 1 cut(s) 92
AspLEI GCGC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 74, 371
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 3 cut(s) 28, 253, 287
BcnI CCSGG 1 cut(s) 190
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 396
BisI GCNGC 2 cut(s) 88, 360
BlsI GCNGC 2 cut(s) 89, 361
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 329
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 251, 329
BseMI GCAATG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 74, 371
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 32, 189
BslI CCNNNNNNNGG 2 cut(s) 251, 329
Bsp1286I GDGCHC 2 cut(s) 25, 195
BspACI CCGC 1 cut(s) 206
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 1 cut(s) 395
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 74, 371
BstV2I GAAGAC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 278
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 395
CviAII CATG 3 cut(s) 40, 107, 233
CviJI RGCY 4 cut(s) 59, 87, 322, 373
CviKI_1 RGCY 4 cut(s) 59, 87, 322, 373
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 3 cut(s) 43, 110, 236
FatI CATG 3 cut(s) 39, 106, 232
FauNDI CATATG 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 88, 360
Fsp4HI GCNGC 2 cut(s) 88, 360
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 394
GluI GCNGC 2 cut(s) 88, 360
HaeII RGCGCY 1 cut(s) 396
HapII CCGG 2 cut(s) 32, 189
HhaI GCGC 1 cut(s) 395
Hin1II CATG 3 cut(s) 43, 110, 236
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HinfI GANTC 1 cut(s) 279
HpaII CCGG 2 cut(s) 32, 189
HphI GGTGA 1 cut(s) 412
Hpy188III TCNNGA 2 cut(s) 233, 338
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 5 cut(s) 90, 153, 158, 274, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
Hsp92II CATG 3 cut(s) 43, 110, 236
HspAI GCGC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 3 cut(s) 45, 202, 237
Lsp1109I GCAGC 2 cut(s) 74, 371
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 338
MboII GAAGA 5 cut(s) 221, 240, 342, 359, 392
MhlI GDGCHC 2 cut(s) 25, 195
MluCI AATT 5 cut(s) 7, 92, 342, 363, 412
MnlI CCTC 1 cut(s) 391
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 5 cut(s) 27, 132, 218, 240, 258
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 2 cut(s) 32, 189
MspR9I CCNGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 69
NlaIII CATG 3 cut(s) 43, 110, 236
NlaIV GGNNCC 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 89, 361
PspN4I GGNNCC 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 87
SaqAI TTAA 5 cut(s) 27, 132, 218, 240, 258
SatI GCNGC 2 cut(s) 88, 360
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 25, 195
SetI ASST 2 cut(s) 89, 402
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 16
Sse9I AATT 5 cut(s) 7, 92, 342, 363, 412
SsiI CCGC 1 cut(s) 206
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 180
TasI AATT 5 cut(s) 7, 92, 342, 363, 412
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 5 cut(s) 27, 132, 218, 240, 258
Tru9I TTAA 5 cut(s) 27, 132, 218, 240, 258
TseI GCWGC 2 cut(s) 87, 359
TspDTI ATGAA 3 cut(s) 56, 93, 221
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.