Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Reverse (-)

45784705 .. 45786079

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1335000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGATGATACGGAAAATTGGTGCTATAGAGCACTTACCGGACTATATGAAGATATGCTTCAAGGCTCTTTACGATATGACGAATGAAATCAAGTGTAAGGTCCATCAAAAGCACGGATGGAACCTGTTGCATTCGCTAAAGAAGACAATGTATATACGTATATACAAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

58

Amino Acids

6.94

Weight (kDa)

9.7

Isoelectric Point (pI)

23.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	7 - 50	6.3e-10	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	61
Alw21I	GWGCWC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	2 cut(s)	111, 111
BfmI	CTRYAG	2 cut(s)	24, 170
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	37
BseGI	GGATG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	122
BstSFI	CTRYAG	2 cut(s)	24, 170
BstSNI	TACGTA	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	100
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
Eco105I	TACGTA	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	100
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FokI	GGATG	1 cut(s)	129
FspEI	CC	9 cut(s)	3, 23, 47, 51, 83, 99, 103, 116, 137
HapII	CCGG	1 cut(s)	38
HpaII	CCGG	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	51, 137
MaeII	ACGT	1 cut(s)	157
MboII	GAAGA	2 cut(s)	61, 154
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	1 cut(s)	15
MspI	CCGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	3 cut(s)	102, 126, 160
SfcI	CTRYAG	2 cut(s)	24, 170
SgeI	CNNG	5 cut(s)	50, 73, 103, 125, 136
SinI	GGWCC	1 cut(s)	100
SnaBI	TACGTA	1 cut(s)	158
Sse9I	AATT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	160
TasI	AATT	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	62, 99
TspGWI	ACGGA	2 cut(s)	25, 129
VpaK11BI	GGWCC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.