FvH4_3g03061

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1633206 .. 1635362
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03061.t1

Sequence Viewer

Length: 1656 bp
ATGCAGCTTACACATAAGAAGCAGCTGCCTACTTTTCAAAGACGGGGCATTGCCGAAGATAGCTTGCTTCCCAGTTCTACTAGTCCCATAAAGCCGATGAACGTTGAAACCAAGCATACTAGAACTATGGGTGACATTTTTGTCCAACATTCTCAGAAGTTGGAACTATTCAGAAATGTCTTGAGGAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATATGATCGATGCTGTTCAAAGGCTAGGCATCGATTACCACTTTCAACGAGAAATCGACGAAATTCTGCACAAGCAAATGAGTATTGTATCTGCCTCTGATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACATGGTTACTTCGTGCCTGAAGATGTGTTTAACAACTTCAAGGACAGCAAAGGAACGTTCAAGCAAGTTCTGGGTGAAGACATCAAGGGATTGATGAGCTTATACGAAGCTTCGCAGCTAGGTACAGAAGGAGAAGATACACTTGTTGAAGCTGAAAAGTTTAGTGGCCATCTGCTAAAGACTTCTCTGTCACATCTTGATCATCATCGAGCCAGAATTGTTGGAAATACATTGAGGAATCCTCATCACAAAAGCTTGGCCTCATTCATGGCCAGGAACTTTTTCGTTACTTCTCAAGCCACCAATTCATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAATATGGTCCGGTCTCTGCACCAGAATGAAATAGTTCAAATTTCCAAATGGTGGAAGGAGCTTGGATTGGCTAAGGAACTGAAGTTGGCAAGAGATCAACCACTGAAATGGTACATTTTGTCCATGGCATGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACTCATCTCTTTTGTCTGTTTGATAGATGACATTTTCGATGTTTATGGAACCCTTGATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGAAATTACTGCTATAGACCACTTACCAGACAACATGAAGATATGCTTCAGGGCTCTCTATGATATAACTAATGAAATCAGCTGCAAGGTCTATCTGAAGCATGGATGGAACCCCTTACAATCTTTGAAAATTTCGTGGGCGAGTCTTTGCAATGCGTTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCGAAGTCAGAAGAGTACTTGAAGAACGGCATCGTTTCTTCTGGGGTAAATGTGGGTCTAGTCCACATGTTTTTTCTCTTGGGTCAAAACATAACCAGAAAGAGTGTGGAGTTGTTGAATGAAACTCCAGCCATTATATCGTCCTCAGCAGCAATTCTTCGACTCTGGAACGATTTAGGCAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATGAAGGCTGTTCCATTGAGGAGGCACGAGAAAAGACGATTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAACTGCTCTCTCCAAATCCATTTCCAGCAACATTCACATTGGCTTCTCTTAATCTCGCAAGGATAATCCCCTTGATGTATAGCTACGATGGCAACCAATCCCTTCCATCTCTTAAAGAGTATATGAAACTGATGTTGTATGAGACTGTATCAATGTAA

Protein Analysis

552

Amino Acids

63.06

Weight (kDa)

6.01

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 42 - 187 1.7e-46 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 256 - 496 4.2e-80 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 296 - 496 1.3e-52 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 140, 550
AccB7I CCANNNNNTGG 2 cut(s) 672, 762
AclI AACGTT 2 cut(s) 102, 419
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 2 cut(s) 529, 633
AcsI RAATTY 4 cut(s) 282, 679, 750, 1110
AcuI CTGAAG 4 cut(s) 402, 812, 1012, 1097
AfaI GTAC 3 cut(s) 487, 824, 1193
AfiI CCNNNNNNNGG 2 cut(s) 672, 762
AflIII ACRYGT 1 cut(s) 1242
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 2 cut(s) 635, 1374
Alw21I GWGCWC 1 cut(s) 882
Alw26I GTCTC 3 cut(s) 352, 729, 1634
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 968
AoxI GGCC 3 cut(s) 529, 621, 633
ApeKI GCWGC 8 cut(s) 4, 22, 25, 478, 1062, 1171, 1174, 1325
ApoI RAATTY 4 cut(s) 282, 679, 750, 1110
AseI ATTAAT 1 cut(s) 1461
Asp700I GAANNNNTTC 3 cut(s) 644, 744, 951
AspS9I GGNCC 1 cut(s) 718
AsuHPI GGTGA 2 cut(s) 143, 449
AvaII GGWCC 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 2 cut(s) 531, 635
BanII GRGCYC 2 cut(s) 882, 1036
BauI CACGAG 1 cut(s) 1446
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 882
BbvCI CCTCAGC 1 cut(s) 1321
BbvI GCAGC 8 cut(s) 12, 16, 34, 490, 1049, 1161, 1183, 1337
BccI CCATC 7 cut(s) 540, 972, 1080, 1373, 1382, 1580, 1612
BceAI ACGGC 1 cut(s) 1219
BciT130I CCWGG 2 cut(s) 637, 1376
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 3 cut(s) 352, 729, 1634
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 6 cut(s) 81, 120, 200, 245, 482, 1235
BfmI CTRYAG 1 cut(s) 993
BisI GCNGC 8 cut(s) 5, 23, 26, 479, 1063, 1172, 1175, 1326
BlsI GCNGC 8 cut(s) 6, 24, 27, 480, 1064, 1173, 1176, 1327
BmcAI AGTACT 1 cut(s) 1193
Bme1390I CCNGG 2 cut(s) 637, 1376
Bme18I GGWCC 1 cut(s) 718
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 2 cut(s) 937, 1091
BmrFI CCNGG 2 cut(s) 637, 1376
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 5 cut(s) 193, 220, 258, 1172, 1215
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 4 cut(s) 589, 621, 1488, 1520
BpmI CTGGAG 1 cut(s) 1287
Bpu10I CCTNAGC 2 cut(s) 783, 1321
BpuEI CTTGAG 2 cut(s) 202, 642
Bsa29I ATCGAT 2 cut(s) 228, 252
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 729
BsaJI CCNNGG 1 cut(s) 834
BsaWI WCCGGW 1 cut(s) 720
Bsc4I CCNNNNNNNGG 2 cut(s) 672, 762
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 2 cut(s) 48, 1138
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 2 cut(s) 637, 1376
BseCI ATCGAT 2 cut(s) 228, 252
BseDI CCNNGG 1 cut(s) 834
BseGI GGATG 3 cut(s) 1091, 1372, 1384
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 672, 762
BseMI GCAATG 2 cut(s) 48, 1138
BseMII CTCAG 3 cut(s) 167, 347, 1335
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 881, 1454
BseXI GCAGC 8 cut(s) 12, 16, 34, 490, 1049, 1161, 1183, 1337
BsgI GTGCAG 2 cut(s) 272, 713
BshFI GGCC 3 cut(s) 531, 623, 635
BshVI ATCGAT 2 cut(s) 228, 252
BsiHKAI GWGCWC 1 cut(s) 882
BsiSI CCGG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 672, 762
BsmAI GTCTC 3 cut(s) 352, 729, 1634
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 3 cut(s) 531, 623, 635
Bso31I GGTCTC 1 cut(s) 729
Bsp1286I GDGCHC 2 cut(s) 882, 1036
Bsp143I GATC 5 cut(s) 225, 322, 562, 805, 850
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 3 cut(s) 531, 623, 635
BspCNI CTCAG 3 cut(s) 166, 348, 1334
BspDI ATCGAT 2 cut(s) 228, 252
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 937, 1091
BspPI GGATC 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 729
BsrDI GCAATG 2 cut(s) 48, 1138
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 834
BssMI GATC 5 cut(s) 225, 322, 562, 805, 850
BssSI CACGAG 1 cut(s) 1446
BssT1I CCWWGG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 1446
Bst2UI CCWGG 2 cut(s) 637, 1376
Bst4CI ACNGT 1 cut(s) 1645
Bst6I CTCTTC 2 cut(s) 962, 1182
BstC8I GCNNGC 2 cut(s) 65, 841
BstDEI CTNAG 5 cut(s) 153, 356, 783, 1321, 1411
BstDSI CCRYGG 1 cut(s) 834
BstF5I GGATG 3 cut(s) 1091, 1372, 1384
BstKTI GATC 5 cut(s) 228, 325, 565, 808, 853
BstMAI GTCTC 3 cut(s) 352, 729, 1634
BstMBI GATC 5 cut(s) 225, 322, 562, 805, 850
BstMWI GCNNNNNNNGC 1 cut(s) 1587
BstNI CCWGG 2 cut(s) 637, 1376
BstNSI RCATGY 2 cut(s) 843, 1246
BstSCI CCNGG 2 cut(s) 635, 1374
BstSFI CTRYAG 1 cut(s) 993
BstV1I GCAGC 8 cut(s) 12, 16, 34, 490, 1049, 1161, 1183, 1337
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 850
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 1 cut(s) 850
Bsu15I ATCGAT 2 cut(s) 228, 252
BsuRI GGCC 3 cut(s) 531, 623, 635
BsuTUI ATCGAT 2 cut(s) 228, 252
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 3 cut(s) 1091, 1372, 1384
BtsI GCAGTG 1 cut(s) 1363
BtsIMutI CAGTG 2 cut(s) 812, 1363
Cac8I GCNNGC 2 cut(s) 65, 841
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 718
ClaI ATCGAT 2 cut(s) 228, 252
Csp6I GTAC 3 cut(s) 486, 823, 1192
CviQI GTAC 3 cut(s) 486, 823, 1192
DdeI CTNAG 5 cut(s) 153, 356, 783, 1321, 1411
DpnI GATC 5 cut(s) 227, 324, 564, 807, 852
DpnII GATC 5 cut(s) 225, 322, 562, 805, 850
DrdI GACNNNNNNGTC 2 cut(s) 140, 550
DseDI GACNNNNNNGTC 2 cut(s) 140, 550
EaeI YGGCCR 2 cut(s) 529, 633
Eam1104I CTCTTC 2 cut(s) 962, 1182
EarI CTCTTC 2 cut(s) 962, 1182
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 834
Eco24I GRGCYC 2 cut(s) 882, 1036
Eco31I GGTCTC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 718
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 4 cut(s) 402, 812, 1012, 1097
EcoICRI GAGCTC 1 cut(s) 880
EcoRII CCWGG 2 cut(s) 635, 1374
EcoT14I CCWWGG 1 cut(s) 834
EcoT38I GRGCYC 2 cut(s) 882, 1036
ErhI CCWWGG 1 cut(s) 834
FalI AAGNNNNNCTT 4 cut(s) 489, 521, 1010, 1042
FaqI GGGAC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 8 cut(s) 5, 23, 26, 479, 1063, 1172, 1175, 1326
FokI GGATG 3 cut(s) 1098, 1379, 1391
FriOI GRGCYC 2 cut(s) 882, 1036
Fsp4HI GCNGC 8 cut(s) 5, 23, 26, 479, 1063, 1172, 1175, 1326
FspBI CTAG 6 cut(s) 81, 120, 200, 245, 482, 1235
GluI GCNGC 8 cut(s) 5, 23, 26, 479, 1063, 1172, 1175, 1326
GsuI CTGGAG 1 cut(s) 1287
HaeIII GGCC 3 cut(s) 531, 623, 635
HapII CCGG 1 cut(s) 721
HindIII AAGCTT 2 cut(s) 471, 616
HinfI GANTC 3 cut(s) 601, 1123, 1338
HpaII CCGG 1 cut(s) 721
HphI GGTGA 2 cut(s) 143, 449
Hpy166II GTNNAC 1 cut(s) 1240
Hpy188I TCNGA 7 cut(s) 156, 173, 319, 865, 1077, 1186, 1474
Hpy188III TCNNGA 4 cut(s) 181, 329, 560, 1342
Hpy8I GTNNAC 1 cut(s) 1240
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 5 cut(s) 206, 485, 760, 1418, 1610
HpyCH4III ACNGT 1 cut(s) 1645
HpyCH4IV ACGT 2 cut(s) 102, 419
HpyCH4V TGCA 7 cut(s) 4, 289, 338, 730, 1065, 1131, 1361
HpyF10VI GCNNNNNNNGC 1 cut(s) 1587
HpyF3I CTNAG 5 cut(s) 153, 356, 783, 1321, 1411
HpySE526I ACGT 2 cut(s) 102, 419
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 5 cut(s) 225, 322, 562, 805, 850
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 8 cut(s) 12, 16, 34, 490, 1049, 1161, 1183, 1337
LweI GCATC 5 cut(s) 193, 220, 258, 1172, 1215
MaeI CTAG 6 cut(s) 81, 120, 200, 245, 482, 1235
MaeII ACGT 2 cut(s) 102, 419
MaeIII GTNAC 4 cut(s) 131, 368, 552, 649
MalI GATC 5 cut(s) 227, 324, 564, 807, 852
MboI GATC 5 cut(s) 225, 322, 562, 805, 850
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 2 cut(s) 882, 1036
MlsI TGGCCA 2 cut(s) 531, 635
MluCI AATT 8 cut(s) 282, 579, 667, 679, 750, 984, 1110, 1329
MluNI TGGCCA 2 cut(s) 531, 635
MlyI GAGTC 2 cut(s) 1132, 1332
MmeI TCCRAC 3 cut(s) 141, 169, 565
Mox20I TGGCCA 2 cut(s) 531, 635
MroXI GAANNNNTTC 3 cut(s) 644, 744, 951
MscI TGGCCA 2 cut(s) 531, 635
MseI TTAA 6 cut(s) 393, 677, 972, 1461, 1548, 1611
MslI CAYNNNNRTG 2 cut(s) 735, 817
Msp20I TGGCCA 2 cut(s) 531, 635
MspA1I CMGCKG 3 cut(s) 25, 1062, 1174
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 2 cut(s) 637, 1376
MvaI CCWGG 2 cut(s) 637, 1376
MwoI GCNNNNNNNGC 1 cut(s) 1587
NcoI CCATGG 1 cut(s) 834
NdeII GATC 5 cut(s) 225, 322, 562, 805, 850
NlaIV GGNNCC 2 cut(s) 937, 1091
NmuCI GTSAC 2 cut(s) 131, 552
NspI RCATGY 2 cut(s) 843, 1246
PaeI GCATGC 1 cut(s) 843
PagI TCATGA 1 cut(s) 328
PciI ACATGT 1 cut(s) 1242
PdmI GAANNNNTTC 3 cut(s) 644, 744, 951
PfeI GAWTC 1 cut(s) 601
PflMI CCANNNNNTGG 2 cut(s) 672, 762
PkrI GCNGC 8 cut(s) 6, 24, 27, 480, 1064, 1173, 1176, 1327
PleI GAGTC 2 cut(s) 1131, 1332
PpsI GAGTC 2 cut(s) 1131, 1332
PscI ACATGT 1 cut(s) 1242
PshBI ATTAAT 1 cut(s) 1461
Psp124BI GAGCTC 1 cut(s) 882
Psp1406I AACGTT 2 cut(s) 102, 419
Psp6I CCWGG 2 cut(s) 635, 1374
PspGI CCWGG 2 cut(s) 635, 1374
PspN4I GGNNCC 2 cut(s) 937, 1091
PspPI GGNCC 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 850
PvuII CAGCTG 3 cut(s) 25, 1062, 1174
RsaI GTAC 3 cut(s) 487, 824, 1193
RsaNI GTAC 3 cut(s) 486, 823, 1192
RseI CAYNNNNRTG 2 cut(s) 735, 817
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 6 cut(s) 393, 677, 972, 1461, 1548, 1611
SatI GCNGC 8 cut(s) 5, 23, 26, 479, 1063, 1172, 1175, 1326
Sau3AI GATC 5 cut(s) 225, 322, 562, 805, 850
Sau96I GGNCC 1 cut(s) 718
ScaI AGTACT 1 cut(s) 1193
SchI GAGTC 2 cut(s) 1132, 1332
ScrFI CCNGG 2 cut(s) 637, 1376
SduI GDGCHC 2 cut(s) 882, 1036
SfaNI GCATC 5 cut(s) 193, 220, 258, 1172, 1215
SfcI CTRYAG 1 cut(s) 993
SinI GGWCC 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 735, 817
SmlI CTYRAG 2 cut(s) 181, 657
SmoI CTYRAG 2 cut(s) 181, 657
SpeI ACTAGT 1 cut(s) 80
SphI GCATGC 1 cut(s) 843
Sse9I AATT 8 cut(s) 282, 579, 667, 679, 750, 984, 1110, 1329
SspMI CTAG 6 cut(s) 81, 120, 200, 245, 482, 1235
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 2 cut(s) 635, 1374
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 1 cut(s) 1645
TaiI ACGT 2 cut(s) 105, 422
TaqI TCGA 7 cut(s) 228, 252, 276, 349, 571, 924, 1336
TasI AATT 8 cut(s) 282, 579, 667, 679, 750, 984, 1110, 1329
TatI WGTACW 1 cut(s) 1191
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 6 cut(s) 393, 677, 972, 1461, 1548, 1611
Tru9I TTAA 6 cut(s) 393, 677, 972, 1461, 1548, 1611
TscAI CASTG 2 cut(s) 819, 1363
TseFI GTSAC 2 cut(s) 131, 552
TseI GCWGC 8 cut(s) 4, 22, 25, 478, 1062, 1171, 1174, 1325
Tsp45I GTSAC 2 cut(s) 131, 552
TspRI CASTG 2 cut(s) 819, 1363
Van91I CCANNNNNTGG 2 cut(s) 672, 762
VpaK11BI GGWCC 1 cut(s) 718
VspI ATTAAT 1 cut(s) 1461
XapI RAATTY 4 cut(s) 282, 679, 750, 1110
XceI RCATGY 2 cut(s) 843, 1246
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XmnI GAANNNNTTC 3 cut(s) 644, 744, 951
XspI CTAG 6 cut(s) 81, 120, 200, 245, 482, 1235
ZrmI AGTACT 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.