MD10G1310300.v1.1

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
39501863 .. 39503767
1905 bp
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UTR
Exon/CDS
Intron
MD10G1310300.v1.1.491

Sequence Viewer

Length: 345 bp
ATGCGAAATTGGTGCTATAGAGCACTTAAACCGGACTACATGAACATATATTTCAAGTCTCTTTACAATATGACGAATGAAATCAGCTGCAAATTCTATCAAAAGCATGGGTGGTACCCATTACATTCGTTTAAGAAGTGGAGGATTCTGTGCAATGCATTTTTAGCAGAAGCAAAACGGTTCAAATCCGGGCACTTGCCGAAGGCGGAAGACTACTTAAAGAATGGTATTGTTTCTTCTAGGGGATTCTTTCTCTTGGGTCAAAGTATAACCAAAGAAAGTGTGGAGCCGTTGAATAGAACTCTAGAAATTGCATCTTCCACAGCAGCAATTCTTCGGCTTTAG

Protein Analysis

115

Amino Acids

13.41

Weight (kDa)

9.74

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 10 - 114 8.8e-20 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 10 - 112 2.7e-13 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 114
AciI CCGC 1 cut(s) 206
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 3 cut(s) 55, 184, 295
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 87, 326
ApoI RAATTY 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 114
BarI GAAGNNNNNNTAC 2 cut(s) 220, 252
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 74, 338
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 240, 305
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 88, 327
BlsI GCNGC 2 cut(s) 89, 328
Bme1390I CCNGG 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 116, 288
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 2 cut(s) 74, 338
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 32, 189
BsmAI GTCTC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 25, 195
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 116, 288
BspT107I GGYRCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 74, 338
BstV2I GAAGAC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 40, 107
CviJI RGCY 3 cut(s) 87, 289, 340
CviKI_1 RGCY 3 cut(s) 87, 289, 340
CviQI GTAC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 43, 110
FaiI YATR 7 cut(s) 18, 41, 47, 49, 71, 108, 269
FatI CATG 2 cut(s) 39, 106
Fnu4HI GCNGC 2 cut(s) 88, 327
Fsp4HI GCNGC 2 cut(s) 88, 327
FspBI CTAG 2 cut(s) 240, 305
GluI GCNGC 2 cut(s) 88, 327
HapII CCGG 2 cut(s) 32, 189
Hin1II CATG 2 cut(s) 43, 110
HinfI GANTC 2 cut(s) 145, 246
HpaII CCGG 2 cut(s) 32, 189
Hpy188III TCNNGA 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 90, 153, 158, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 43, 110
KpnI GGTACC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 2 cut(s) 45, 202
Lsp1109I GCAGC 2 cut(s) 74, 338
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 240, 305
MboII GAAGA 4 cut(s) 221, 228, 309, 326
MhlI GDGCHC 2 cut(s) 25, 195
MluCI AATT 4 cut(s) 7, 92, 309, 330
MnlI CCTC 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 3 cut(s) 27, 132, 218
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 2 cut(s) 32, 189
MspR9I CCNGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 190
NlaIII CATG 2 cut(s) 43, 110
NlaIV GGNNCC 2 cut(s) 116, 288
NsiI ATGCAT 1 cut(s) 160
PfeI GAWTC 2 cut(s) 145, 246
PkrI GCNGC 2 cut(s) 89, 328
PspN4I GGNNCC 2 cut(s) 116, 288
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 3 cut(s) 27, 132, 218
SatI GCNGC 2 cut(s) 88, 327
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 25, 195
SetI ASST 1 cut(s) 89
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 16
Sse9I AATT 4 cut(s) 7, 92, 309, 330
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 240, 305
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 180
TasI AATT 4 cut(s) 7, 92, 309, 330
TfiI GAWTC 2 cut(s) 145, 246
Tru1I TTAA 3 cut(s) 27, 132, 218
Tru9I TTAA 3 cut(s) 27, 132, 218
TseI GCWGC 2 cut(s) 87, 326
TspDTI ATGAA 2 cut(s) 56, 93
XapI RAATTY 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XspI CTAG 2 cut(s) 240, 305
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.