Rh5CG044700

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
3081940 .. 3085098
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG044700.1

Sequence Viewer

Length: 1362 bp
ATGGCGTTCATTCTTCAAGCTCATTCTGCCTCCTCAAAGTCTCAGACTGCTGATCTTCACGTCCGTCATGAAGAAAAACTGAAGGAGTTGAAGGAAACACTCGCAAATTCCGGAGAAGATCAACTGCAGCAATTGGTTATGGTTGATGCCATGCAACGCCTCGGCGTCGCTTATTACTTCCAAGAAGAAATTGATGCAATTTTAGAGAAGCAATACACCAGGTCATTAGCTTATAATGATAATGACGATGGCAATCATCAACTTCTTGAGGCTTCCCTACGTTTTCGACTATTGAGACAACAAGGCTTCCCTGTAACTCCAGATGCAGAGGCATGTAACCAGATCAAGAACAATGAGAAACTCAAATCCGGACTAATAGCTGGTGATGAAGACATAAAAGGATTAGTGGAATTATGTGAAGCATCTCACTTGGGTTTCCACGGAGAAGAAACGCTTGACGAAGCAGGAAAGCTCAGTCGCCAGCTTCTCACTGCCTGGGTCCCCAACAATCTCAAAGATCATCGCGCAGCACTTGCCTCGCACACACTGGAGCATCCTTATCACAAGAGCTTGACAAGATTCATGGCCAAGAACTTTTTGAATAATTTTCAAGGCCAAGAGAAATGGGTTTGTTCTTTACGAGAGCTAGCGAACCTAGAGTTCAACATGGTTGAATCCATAATCCGAAATGAAATCCTACAAGTATCTCGATGGTGGAAAGAACTAGGTTTGACCAAAGAGTTGAAGTTTGTGAGAGACCAGCCAATTAAATGGTACACATGGCCGATGGCGAGCCTCGTTGATCCACGATTATCAGATGAAAGATTTGAACTCACAAAAGCAATCTCTCTTGTTTACATTATAGATGACATTTTTGACGTTCATGGAACCCTGGATGAACTCATTCACTTCACAGCAGCAGTTGCGAGATGGGATACTGATACAAATGATGAGCTACCGAATTACATGAAAACATGTTTCAAGGCTCTTAATGAGATTACCAATGATATCAGCGAGAGTGTCTACGAAAAGCACGGATGGAACCCTATTGAAACCCTAAGAGAATCGTGGGCAAGATTGTGCAAGGCATTCTTAGTAGAAGCAGAATGGTTTAGACGTGGGCAGTTGCCAAACTCCGAGGACTACTTGAAGAATGGGATTATCAGTTCAGGGGTGCCTGCAGTTTTAACCCATGCCTTCTTTATTCTTGGTCAAGATATGACCAAGGAAACCATAGATCTTTTCAACAATATCAACTTACCTAGTATCGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAAGTGCCATGGTAATGTTTTCCTATAACCATTTTAGTTGGATAGTTTAA

Protein Analysis

453

Amino Acids

52.13

Weight (kDa)

5.22

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 4 - 176 7.8e-33 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 240 - 439 2e-65 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 280 - 440 5.5e-40 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 1174
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 1 cut(s) 525
AccIII TCCGGA 2 cut(s) 110, 368
AclWI GGATC 1 cut(s) 797
AcoI YGGCCR 3 cut(s) 585, 782, 1281
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 776
AflIII ACRYGT 1 cut(s) 974
AjiI CACGTC 2 cut(s) 61, 1118
AjnI CCWGG 3 cut(s) 218, 494, 891
AloI GAACNNNNNNTCC 2 cut(s) 1150, 1182
AluBI AGCT 8 cut(s) 20, 230, 380, 472, 484, 570, 646, 955
AluI AGCT 8 cut(s) 20, 230, 380, 472, 484, 570, 646, 955
Alw26I GTCTC 3 cut(s) 45, 289, 750
AlwI GGATC 1 cut(s) 797
Aor13HI TCCGGA 2 cut(s) 110, 368
AoxI GGCC 4 cut(s) 585, 613, 782, 1281
ApeKI GCWGC 3 cut(s) 127, 527, 917
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 395
AsuNHI GCTAGC 1 cut(s) 646
AvaII GGWCC 1 cut(s) 499
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 1 cut(s) 1174
BarI GAAGNNNNNNTAC 2 cut(s) 1258, 1290
BbsI GAAGAC 2 cut(s) 396, 1266
BbvI GCAGC 3 cut(s) 139, 539, 929
BccI CCATC 5 cut(s) 242, 705, 781, 924, 1032
BceAI ACGGC 1 cut(s) 1296
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 3 cut(s) 220, 496, 893
BciVI GTATCC 1 cut(s) 928
BcoDI GTCTC 3 cut(s) 45, 289, 750
BfaI CTAG 4 cut(s) 647, 656, 725, 1263
BfmI CTRYAG 2 cut(s) 125, 1179
BfuI GTATCC 1 cut(s) 928
BglII AGATCT 1 cut(s) 1237
BisI GCNGC 3 cut(s) 128, 528, 918
BlsI GCNGC 3 cut(s) 129, 529, 919
Bme1390I CCNGG 3 cut(s) 220, 496, 893
Bme18I GGWCC 1 cut(s) 499
BmgBI CACGTC 2 cut(s) 61, 1118
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 5 cut(s) 500, 501, 889, 1043, 1176
BmrFI CCNGG 3 cut(s) 220, 496, 893
BmsI GCATC 5 cut(s) 136, 184, 313, 431, 562
BmtI GCTAGC 1 cut(s) 650
BpiI GAAGAC 2 cut(s) 396, 1266
BpmI CTGGAG 2 cut(s) 303, 569
BpuEI CTTGAG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 7 cut(s) 160, 439, 495, 891, 1137, 1224, 1320
BsaWI WCCGGW 2 cut(s) 110, 368
Bse1I ACTGG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 252
BseAI TCCGGA 2 cut(s) 110, 368
BseBI CCWGG 3 cut(s) 220, 496, 893
BseDI CCNNGG 7 cut(s) 160, 439, 495, 891, 1137, 1224, 1320
BseGI GGATG 4 cut(s) 553, 901, 1043, 1309
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 2 cut(s) 56, 487
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 3 cut(s) 139, 539, 929
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 4 cut(s) 587, 615, 784, 1283
BshNI GGYRCC 1 cut(s) 1174
BsiSI CCGG 2 cut(s) 111, 369
BslFI GGGAC 1 cut(s) 485
BsmAI GTCTC 3 cut(s) 45, 289, 750
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 1088
BsnI GGCC 4 cut(s) 587, 615, 784, 1283
Bso31I GGTCTC 1 cut(s) 750
Bsp13I TCCGGA 2 cut(s) 110, 368
Bsp143I GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
Bsp19I CCATGG 1 cut(s) 1320
BspANI GGCC 4 cut(s) 587, 615, 784, 1283
BspCNI CTCAG 2 cut(s) 55, 486
BspEI TCCGGA 2 cut(s) 110, 368
BspFNI CGCG 1 cut(s) 525
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 5 cut(s) 500, 501, 889, 1043, 1176
BspMAI CTGCAG 2 cut(s) 129, 1183
BspOI GCTAGC 1 cut(s) 650
BspPI GGATC 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 1174
BspTNI GGTCTC 1 cut(s) 750
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 7 cut(s) 160, 439, 495, 891, 1137, 1224, 1320
BssMI GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 1224, 1320
Bst2UI CCWGG 3 cut(s) 220, 496, 893
BstACI GRCGYC 1 cut(s) 165
BstAPI GCANNNNNTGC 2 cut(s) 533, 923
BstC8I GCNNGC 4 cut(s) 482, 648, 793, 1179
BstDEI CTNAG 4 cut(s) 42, 473, 1058, 1093
BstDSI CCRYGG 2 cut(s) 439, 1320
BstF5I GGATG 4 cut(s) 553, 901, 1043, 1309
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 6 cut(s) 55, 121, 345, 520, 805, 1240
BstMAI GTCTC 3 cut(s) 45, 289, 750
BstMBI GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 26, 533, 923
BstNI CCWGG 3 cut(s) 220, 496, 893
BstNSI RCATGY 2 cut(s) 336, 978
BstSCI CCNGG 3 cut(s) 218, 494, 891
BstSFI CTRYAG 2 cut(s) 125, 1179
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 3 cut(s) 139, 539, 929
BstV2I GAAGAC 2 cut(s) 396, 1266
BstX2I RGATCY 1 cut(s) 1237
BstXI CCANNNNNNTGG 1 cut(s) 771
BstYI RGATCY 1 cut(s) 1237
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 4 cut(s) 587, 615, 784, 1283
BtgI CCRYGG 2 cut(s) 439, 1320
BtgZI GCGATG 1 cut(s) 506
BtrI CACGTC 2 cut(s) 61, 1118
BtsCI GGATG 4 cut(s) 553, 901, 1043, 1309
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 489, 545
Cac8I GCNNGC 4 cut(s) 482, 648, 793, 1179
CciI TCATGA 1 cut(s) 67
CfoI GCGC 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 499
CseI GACGC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 218
Csp6I GTAC 1 cut(s) 775
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 4 cut(s) 42, 473, 1058, 1093
DpnI GATC 6 cut(s) 54, 120, 344, 519, 804, 1239
DpnII GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
EaeI YGGCCR 3 cut(s) 585, 782, 1281
Eco130I CCWWGG 2 cut(s) 1224, 1320
Eco31I GGTCTC 1 cut(s) 750
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 218, 494, 891
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 2 cut(s) 1224, 1320
ErhI CCWWGG 2 cut(s) 1224, 1320
FalI AAGNNNNNCTT 4 cut(s) 438, 470, 1076, 1108
FaqI GGGAC 1 cut(s) 485
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 3 cut(s) 128, 528, 918
FokI GGATG 4 cut(s) 540, 908, 1050, 1316
Fsp4HI GCNGC 3 cut(s) 128, 528, 918
FspBI CTAG 4 cut(s) 647, 656, 725, 1263
GlaI GCGC 1 cut(s) 526
GluI GCNGC 3 cut(s) 128, 528, 918
GsuI CTGGAG 2 cut(s) 303, 569
HaeIII GGCC 4 cut(s) 587, 615, 784, 1283
HapII CCGG 2 cut(s) 111, 369
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HinfI GANTC 3 cut(s) 579, 674, 1064
HpaII CCGG 2 cut(s) 111, 369
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 3 cut(s) 777, 856, 1024
Hpy188I TCNGA 4 cut(s) 45, 686, 817, 1138
Hpy188III TCNNGA 8 cut(s) 68, 111, 266, 320, 346, 369, 708, 1214
Hpy8I GTNNAC 3 cut(s) 777, 856, 1024
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 76, 85, 1207
HpyCH4IV ACGT 4 cut(s) 60, 280, 879, 1117
HpyCH4V TGCA 6 cut(s) 127, 154, 197, 326, 1083, 1181
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 533, 923
HpyF3I CTNAG 4 cut(s) 42, 473, 1058, 1093
HpySE526I ACGT 4 cut(s) 60, 280, 879, 1117
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 525
KflI GGGWCCC 1 cut(s) 499
Kpn2I TCCGGA 2 cut(s) 110, 368
Kzo9I GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 3 cut(s) 139, 539, 929
LweI GCATC 5 cut(s) 136, 184, 313, 431, 562
MabI ACCWGGT 1 cut(s) 218
MaeI CTAG 4 cut(s) 647, 656, 725, 1263
MaeII ACGT 4 cut(s) 60, 280, 879, 1117
MaeIII GTNAC 2 cut(s) 313, 335
MalI GATC 6 cut(s) 54, 120, 344, 519, 804, 1239
MboI GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
MboII GAAGA 9 cut(s) 5, 47, 83, 128, 197, 401, 458, 1162, 1266
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 1 cut(s) 1237
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 8 cut(s) 106, 131, 189, 198, 410, 604, 765, 961
MluNI TGGCCA 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 1331
MnlI CCTC 8 cut(s) 40, 43, 170, 262, 322, 547, 806, 1132
Mox20I TGGCCA 1 cut(s) 587
MroI TCCGGA 2 cut(s) 110, 368
MroXI GAANNNNTTC 1 cut(s) 903
MscI TGGCCA 1 cut(s) 587
MseI TTAA 4 cut(s) 768, 990, 1187, 1360
MslI CAYNNNNRTG 1 cut(s) 1325
Msp20I TGGCCA 1 cut(s) 587
MspI CCGG 2 cut(s) 111, 369
MspR9I CCNGG 3 cut(s) 220, 496, 893
MunI CAATTG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 1088
MvaI CCWGG 3 cut(s) 220, 496, 893
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 26, 533, 923
NcoI CCATGG 1 cut(s) 1320
NdeII GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
NheI GCTAGC 1 cut(s) 646
NlaIV GGNNCC 5 cut(s) 500, 501, 889, 1043, 1176
NmeAIII GCCGAG 1 cut(s) 141
NspI RCATGY 2 cut(s) 336, 978
PagI TCATGA 1 cut(s) 67
PciI ACATGT 1 cut(s) 974
PctI GAATGC 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 3 cut(s) 579, 674, 1064
PkrI GCNGC 3 cut(s) 129, 529, 919
PpuMI RGGWCCY 1 cut(s) 499
PscI ACATGT 1 cut(s) 974
PsiI TTATAA 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 3 cut(s) 218, 494, 891
PspGI CCWGG 3 cut(s) 218, 494, 891
PspN4I GGNNCC 5 cut(s) 500, 501, 889, 1043, 1176
PspPI GGNCC 1 cut(s) 499
PspPPI RGGWCCY 1 cut(s) 499
PstI CTGCAG 2 cut(s) 129, 1183
PsuI RGATCY 1 cut(s) 1237
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 1 cut(s) 1325
SaqAI TTAA 4 cut(s) 768, 990, 1187, 1360
SatI GCNGC 3 cut(s) 128, 528, 918
Sau3AI GATC 6 cut(s) 52, 118, 342, 517, 802, 1237
Sau96I GGNCC 1 cut(s) 499
ScrFI CCNGG 3 cut(s) 220, 496, 893
SexAI ACCWGGT 1 cut(s) 218
SfaNI GCATC 5 cut(s) 136, 184, 313, 431, 562
SfcI CTRYAG 2 cut(s) 125, 1179
SinI GGWCC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 1325
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 8 cut(s) 106, 131, 189, 198, 410, 604, 765, 961
SspMI CTAG 4 cut(s) 647, 656, 725, 1263
StyD4I CCNGG 3 cut(s) 218, 494, 891
StyI CCWWGG 2 cut(s) 1224, 1320
TaiI ACGT 4 cut(s) 63, 283, 882, 1120
TaqI TCGA 2 cut(s) 286, 709
TasI AATT 8 cut(s) 106, 131, 189, 198, 410, 604, 765, 961
TfiI GAWTC 3 cut(s) 579, 674, 1064
Tru1I TTAA 4 cut(s) 768, 990, 1187, 1360
Tru9I TTAA 4 cut(s) 768, 990, 1187, 1360
TscAI CASTG 2 cut(s) 496, 552
TseI GCWGC 3 cut(s) 127, 527, 917
TspDTI ATGAA 8 cut(s) 84, 402, 571, 705, 834, 872, 912, 983
TspGWI ACGGA 3 cut(s) 53, 456, 1050
TspRI CASTG 2 cut(s) 496, 552
VpaK11BI GGWCC 1 cut(s) 499
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 336, 978
XmiI GTMKAC 1 cut(s) 1023
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 4 cut(s) 647, 656, 725, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.