FvH4_3g03042

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
1613290 .. 1615710
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03042.t2

Sequence Viewer

Length: 1674 bp
ATGCTGATCATAGATCAGATGGCATCGTCTTCTCGGGCCTTCTTTAAAGTATTCAATCCTGCTCCAAAAATTATCTCACATATTGGCCACTCTAAACTCATGCAGCTTACACCTAAGAAGCAGCTGCCTGCTACTTTTCAAAGATGGGGCGTTGCCGAAGATAGCTTGCTTTCCAGTTCTAGTGCTCCCATAAAGCTGATGAACGTTGAAACCAAGCATACTAGAACTATGGGTGACATTTTTGTCCAACATTCTCAGAAGTTGGAACTATTCAGAAATGTCTTAAGGAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATATGATCGATGCTGTTCAAAGGCTAGGCATCGATTTCCACTTTCAACGAGAAATCGATGAAATTCTGCACAAGCAAATGAGTATTGTATCTGCCTCTGATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACATGGTTACTTCGTGCCTGAAGATGTGTTTAACAACTTCAAGGACAGCAAAGGAACGTTCAAGCAAGTTCTGGGTGAAGACATCAAGGGATTGATGAGCTTATACGAAGCTTCGCAGCTAGGTACAGAAGGAGAAGATACACTTGTTGAAGCTGAAAAGTTTAGTGGCCATCTGCTAAAGACTTCTCTGTCACATCTTGATCATCATCAAGCCAGAATTGTTGGCAATACATTGAGGAATCCTCATCACAGAAGCTTGGCCTCATTCATGGCTAGGAACTTTTTCGTTACTTCTCAAGCCACCAATTCATGGTTAAATTTGCTAAAAGACGTAGCAAAAACAGATTTCAATATGGTCCGGTCTCTGCATCAGAATGAAATAGTTCAAATTTCCAAATGGTGGAAGGAGCTTGGATTGGCTAAGGAACTGAAGTTTGCAAGAGATCAACCACAGAAATGGTACATTTGGTCCATGGCATGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATTTCTTTTGTCTATTTGATAGATGACATTTTCGATGTTTATGGAACTCTTGATGACCTCATTCTCTTCACAGAAGCTGTTAATAGATGGGAAATTACTGCTATAGACCACTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATCAGAAGCATGGATGGAACCCCTTACAATCTTTGAAAATTTCGTGGGCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCGAAGTCAGAAGAGTACTTGAAGAACGGCATCGTTTCTTCTGGGGTTAATGTGGTTCTAGTCCACATGTTTTTTCTCTTGGGTCAAAACATAACCAGAAAGAGTGTGGAGTTGTTGAATGAAACTCCAGCCATGATATCGTCCTCAGCAGCAATTCTTCGACTCTGGGACGATTTAGGCAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATGAAGGCTGTTCCATTGAGGAGGCACGAGAAAAGACGATTAATATGATTTCAGATGAATGGAAGAAATTGAACAGAGAACTGCTCTCTCCAAATCCATTTCCAGCAACATTCACATTGGCTTCTCTTAATCTCGCAAGAATGATCCCTTGA

Protein Analysis

558

Amino Acids

63.69

Weight (kDa)

6.11

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 69 - 155 5.3e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 251 - 491 6.6e-83 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 293 - 491 4.4e-53 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 242, 652
AccB7I CCANNNNNTGG 2 cut(s) 774, 864
AclI AACGTT 2 cut(s) 204, 521
AclWI GGATC 2 cut(s) 947, 1660
AcoI YGGCCR 2 cut(s) 85, 631
AcsI RAATTY 4 cut(s) 384, 781, 852, 1212
AcuI CTGAAG 2 cut(s) 504, 914
AfaI GTAC 3 cut(s) 589, 926, 1295
AfiI CCNNNNNNNGG 2 cut(s) 774, 864
AflII CTTAAG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 1344
AjnI CCWGG 1 cut(s) 1476
Alw21I GWGCWC 2 cut(s) 187, 984
Alw26I GTCTC 2 cut(s) 454, 831
AlwI GGATC 2 cut(s) 947, 1660
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 4 cut(s) 36, 85, 631, 723
ApeKI GCWGC 8 cut(s) 103, 121, 124, 580, 1164, 1273, 1276, 1427
ApoI RAATTY 4 cut(s) 384, 781, 852, 1212
AseI ATTAAT 1 cut(s) 1563
Asp700I GAANNNNTTC 2 cut(s) 746, 846
AspS9I GGNCC 3 cut(s) 36, 820, 933
AsuHPI GGTGA 2 cut(s) 245, 551
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 2 cut(s) 820, 933
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BalI TGGCCA 2 cut(s) 87, 633
BanII GRGCYC 1 cut(s) 984
BauI CACGAG 1 cut(s) 1548
BbsI GAAGAC 2 cut(s) 21, 549
Bbv12I GWGCWC 2 cut(s) 187, 984
BbvCI CCTCAGC 1 cut(s) 1423
BbvI GCAGC 8 cut(s) 111, 115, 133, 592, 1151, 1263, 1285, 1439
BccI CCATC 7 cut(s) 13, 138, 642, 1074, 1182, 1475, 1484
BceAI ACGGC 1 cut(s) 1321
BciT130I CCWGG 1 cut(s) 1478
BclI TGATCA 2 cut(s) 6, 664
BcoDI GTCTC 2 cut(s) 454, 831
BfaI CTAG 7 cut(s) 180, 222, 302, 347, 584, 738, 1337
BfmI CTRYAG 1 cut(s) 1095
BfrI CTTAAG 1 cut(s) 283
BisI GCNGC 8 cut(s) 104, 122, 125, 581, 1165, 1274, 1277, 1428
BlsI GCNGC 8 cut(s) 105, 123, 126, 582, 1166, 1275, 1278, 1429
BmcAI AGTACT 1 cut(s) 1295
Bme1390I CCNGG 1 cut(s) 1478
Bme18I GGWCC 2 cut(s) 820, 933
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 3 cut(s) 36, 820, 933
BmiI GGNNCC 1 cut(s) 1193
BmrFI CCNGG 1 cut(s) 1478
BmsI GCATC 7 cut(s) 32, 295, 322, 360, 841, 1274, 1317
BpiI GAAGAC 2 cut(s) 21, 549
BplI GAGNNNNNCTC 4 cut(s) 691, 723, 1590, 1622
BpmI CTGGAG 1 cut(s) 1389
Bpu10I CCTNAGC 2 cut(s) 885, 1423
BpuEI CTTGAG 1 cut(s) 744
Bsa29I ATCGAT 3 cut(s) 330, 354, 378
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 1 cut(s) 936
BsaWI WCCGGW 1 cut(s) 822
Bsc4I CCNNNNNNNGG 2 cut(s) 774, 864
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 1240
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 1 cut(s) 1478
BseCI ATCGAT 3 cut(s) 330, 354, 378
BseDI CCNNGG 1 cut(s) 936
BseGI GGATG 3 cut(s) 1193, 1474, 1486
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 2 cut(s) 774, 864
BseMI GCAATG 1 cut(s) 1240
BseMII CTCAG 3 cut(s) 269, 449, 1437
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 983, 1556
BseXI GCAGC 8 cut(s) 111, 115, 133, 592, 1151, 1263, 1285, 1439
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 4 cut(s) 38, 87, 633, 725
BshVI ATCGAT 3 cut(s) 330, 354, 378
BsiHKAI GWGCWC 2 cut(s) 187, 984
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 823
BslFI GGGAC 1 cut(s) 1460
BslI CCNNNNNNNGG 2 cut(s) 774, 864
BsmAI GTCTC 2 cut(s) 454, 831
BsmFI GGGAC 1 cut(s) 1460
BsnI GGCC 4 cut(s) 38, 87, 633, 725
Bso31I GGTCTC 1 cut(s) 831
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 187, 984
Bsp143I GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
Bsp19I CCATGG 1 cut(s) 936
BspANI GGCC 4 cut(s) 38, 87, 633, 725
BspCNI CTCAG 3 cut(s) 268, 450, 1436
BspDI ATCGAT 3 cut(s) 330, 354, 378
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 1193
BspPI GGATC 2 cut(s) 947, 1660
BspTI CTTAAG 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 831
BsrDI GCAATG 1 cut(s) 1240
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 936
BssMI GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
BssSI CACGAG 1 cut(s) 1548
BssT1I CCWWGG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 1548
Bst2UI CCWGG 1 cut(s) 1478
Bst6I CTCTTC 2 cut(s) 1064, 1284
BstAFI CTTAAG 1 cut(s) 283
BstC8I GCNNGC 3 cut(s) 129, 167, 943
BstDEI CTNAG 6 cut(s) 114, 255, 458, 885, 1423, 1513
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 3 cut(s) 1193, 1474, 1486
BstKTI GATC 8 cut(s) 9, 16, 330, 427, 667, 910, 955, 1668
BstMAI GTCTC 2 cut(s) 454, 831
BstMBI GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
BstNI CCWGG 1 cut(s) 1478
BstNSI RCATGY 2 cut(s) 945, 1348
BstSCI CCNGG 1 cut(s) 1476
BstSFI CTRYAG 1 cut(s) 1095
BstV1I GCAGC 8 cut(s) 111, 115, 133, 592, 1151, 1263, 1285, 1439
BstV2I GAAGAC 2 cut(s) 21, 549
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 921
BstYI RGATCY 1 cut(s) 952
Bsu15I ATCGAT 3 cut(s) 330, 354, 378
BsuRI GGCC 4 cut(s) 38, 87, 633, 725
BsuTUI ATCGAT 3 cut(s) 330, 354, 378
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 3 cut(s) 1193, 1474, 1486
BtsI GCAGTG 1 cut(s) 1465
BtsIMutI CAGTG 1 cut(s) 1465
Cac8I GCNNGC 3 cut(s) 129, 167, 943
CaiI CAGNNNCTG 1 cut(s) 1070
CciI TCATGA 1 cut(s) 430
Cfr13I GGNCC 3 cut(s) 36, 820, 933
ClaI ATCGAT 3 cut(s) 330, 354, 378
Csp6I GTAC 3 cut(s) 588, 925, 1294
CviQI GTAC 3 cut(s) 588, 925, 1294
DdeI CTNAG 6 cut(s) 114, 255, 458, 885, 1423, 1513
DpnI GATC 8 cut(s) 8, 15, 329, 426, 666, 909, 954, 1667
DpnII GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
DraI TTTAAA 1 cut(s) 46
DrdI GACNNNNNNGTC 2 cut(s) 242, 652
DseDI GACNNNNNNGTC 2 cut(s) 242, 652
EaeI YGGCCR 2 cut(s) 85, 631
Eam1104I CTCTTC 2 cut(s) 1064, 1284
EarI CTCTTC 2 cut(s) 1064, 1284
Ecl136II GAGCTC 1 cut(s) 982
Eco130I CCWWGG 1 cut(s) 936
Eco24I GRGCYC 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 1416
Eco47I GGWCC 2 cut(s) 820, 933
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 2 cut(s) 504, 914
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 1476
EcoRV GATATC 1 cut(s) 1416
EcoT14I CCWWGG 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 1 cut(s) 936
FalI AAGNNNNNCTT 4 cut(s) 591, 623, 1112, 1144
FaqI GGGAC 1 cut(s) 1460
FbaI TGATCA 2 cut(s) 6, 664
Fnu4HI GCNGC 8 cut(s) 104, 122, 125, 581, 1165, 1274, 1277, 1428
FokI GGATG 3 cut(s) 1200, 1481, 1493
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 8 cut(s) 104, 122, 125, 581, 1165, 1274, 1277, 1428
FspBI CTAG 7 cut(s) 180, 222, 302, 347, 584, 738, 1337
GluI GCNGC 8 cut(s) 104, 122, 125, 581, 1165, 1274, 1277, 1428
GsuI CTGGAG 1 cut(s) 1389
HaeIII GGCC 4 cut(s) 38, 87, 633, 725
HapII CCGG 1 cut(s) 823
HindIII AAGCTT 2 cut(s) 573, 718
HinfI GANTC 3 cut(s) 703, 1225, 1440
HpaII CCGG 1 cut(s) 823
HphI GGTGA 2 cut(s) 245, 551
Hpy166II GTNNAC 1 cut(s) 1342
Hpy188I TCNGA 9 cut(s) 18, 258, 275, 421, 837, 967, 1179, 1288, 1576
Hpy188III TCNNGA 3 cut(s) 431, 662, 1043
Hpy8I GTNNAC 1 cut(s) 1342
HpyAV CCTTC 5 cut(s) 49, 308, 587, 862, 1520
HpyCH4IV ACGT 3 cut(s) 204, 521, 795
HpyCH4V TGCA 9 cut(s) 103, 391, 440, 832, 902, 1167, 1233, 1238, 1463
HpyF3I CTNAG 6 cut(s) 114, 255, 458, 885, 1423, 1513
HpySE526I ACGT 3 cut(s) 204, 521, 795
Ksp22I TGATCA 2 cut(s) 6, 664
Kzo9I GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
LmnI GCTCC 3 cut(s) 67, 190, 871
Lsp1109I GCAGC 8 cut(s) 111, 115, 133, 592, 1151, 1263, 1285, 1439
LweI GCATC 7 cut(s) 32, 295, 322, 360, 841, 1274, 1317
MaeI CTAG 7 cut(s) 180, 222, 302, 347, 584, 738, 1337
MaeII ACGT 3 cut(s) 204, 521, 795
MaeIII GTNAC 4 cut(s) 233, 470, 654, 751
MalI GATC 8 cut(s) 8, 15, 329, 426, 666, 909, 954, 1667
MboI GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 187, 984
MlsI TGGCCA 2 cut(s) 87, 633
MluNI TGGCCA 2 cut(s) 87, 633
MlyI GAGTC 2 cut(s) 1234, 1434
MmeI TCCRAC 2 cut(s) 243, 271
Mox20I TGGCCA 2 cut(s) 87, 633
Mph1103I ATGCAT 1 cut(s) 1240
MroXI GAANNNNTTC 2 cut(s) 746, 846
MscI TGGCCA 2 cut(s) 87, 633
MseI TTAA 8 cut(s) 45, 284, 495, 779, 1074, 1326, 1563, 1650
MslI CAYNNNNRTG 2 cut(s) 837, 919
Msp20I TGGCCA 2 cut(s) 87, 633
MspA1I CMGCKG 3 cut(s) 124, 1164, 1276
MspCI CTTAAG 1 cut(s) 283
MspI CCGG 1 cut(s) 823
MspR9I CCNGG 1 cut(s) 1478
MvaI CCWGG 1 cut(s) 1478
NcoI CCATGG 1 cut(s) 936
NdeII GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
NlaIV GGNNCC 1 cut(s) 1193
NmuCI GTSAC 2 cut(s) 233, 654
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 2 cut(s) 945, 1348
PaeI GCATGC 1 cut(s) 945
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 1344
PdmI GAANNNNTTC 2 cut(s) 746, 846
PfeI GAWTC 1 cut(s) 703
PflMI CCANNNNNTGG 2 cut(s) 774, 864
PkrI GCNGC 8 cut(s) 105, 123, 126, 582, 1166, 1275, 1278, 1429
PleI GAGTC 2 cut(s) 1233, 1434
PpsI GAGTC 2 cut(s) 1233, 1434
PscI ACATGT 1 cut(s) 1344
PshBI ATTAAT 1 cut(s) 1563
Psp124BI GAGCTC 1 cut(s) 984
Psp1406I AACGTT 2 cut(s) 204, 521
Psp6I CCWGG 1 cut(s) 1476
PspGI CCWGG 1 cut(s) 1476
PspN4I GGNNCC 1 cut(s) 1193
PspPI GGNCC 3 cut(s) 36, 820, 933
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 952
PvuII CAGCTG 3 cut(s) 124, 1164, 1276
RsaI GTAC 3 cut(s) 589, 926, 1295
RsaNI GTAC 3 cut(s) 588, 925, 1294
RseI CAYNNNNRTG 2 cut(s) 837, 919
SacI GAGCTC 1 cut(s) 984
SaqAI TTAA 8 cut(s) 45, 284, 495, 779, 1074, 1326, 1563, 1650
SatI GCNGC 8 cut(s) 104, 122, 125, 581, 1165, 1274, 1277, 1428
Sau3AI GATC 8 cut(s) 6, 13, 327, 424, 664, 907, 952, 1665
Sau96I GGNCC 3 cut(s) 36, 820, 933
ScaI AGTACT 1 cut(s) 1295
SchI GAGTC 2 cut(s) 1234, 1434
ScrFI CCNGG 1 cut(s) 1478
SduI GDGCHC 2 cut(s) 187, 984
SfaNI GCATC 7 cut(s) 32, 295, 322, 360, 841, 1274, 1317
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 2 cut(s) 820, 933
SmiMI CAYNNNNRTG 2 cut(s) 837, 919
SmlI CTYRAG 2 cut(s) 283, 759
SmoI CTYRAG 2 cut(s) 283, 759
SphI GCATGC 1 cut(s) 945
SspMI CTAG 7 cut(s) 180, 222, 302, 347, 584, 738, 1337
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 1476
StyI CCWWGG 1 cut(s) 936
TaiI ACGT 3 cut(s) 207, 524, 798
TaqI TCGA 6 cut(s) 330, 354, 378, 451, 1026, 1438
TatI WGTACW 1 cut(s) 1293
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 8 cut(s) 45, 284, 495, 779, 1074, 1326, 1563, 1650
Tru9I TTAA 8 cut(s) 45, 284, 495, 779, 1074, 1326, 1563, 1650
TscAI CASTG 1 cut(s) 1465
TseFI GTSAC 2 cut(s) 233, 654
TseI GCWGC 8 cut(s) 103, 121, 124, 580, 1164, 1273, 1276, 1427
Tsp45I GTSAC 2 cut(s) 233, 654
TspRI CASTG 1 cut(s) 1465
Van91I CCANNNNNTGG 2 cut(s) 774, 864
Vha464I CTTAAG 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 820, 933
VspI ATTAAT 1 cut(s) 1563
XapI RAATTY 4 cut(s) 384, 781, 852, 1212
XceI RCATGY 2 cut(s) 945, 1348
XcmI CCANNNNNNNNNTGG 1 cut(s) 1381
XmnI GAANNNNTTC 2 cut(s) 746, 846
XspI CTAG 7 cut(s) 180, 222, 302, 347, 584, 738, 1337
ZrmI AGTACT 1 cut(s) 1295
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.