Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

1642571 .. 1645757

Gene Structure 3187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03072.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCATCGTCTTCTCGGGCCTTCTTTAAAGTATTCAATCCTGCTCCAAAAATTATCTCACATATTGGCCACTCTAAACTCATGCAGCTTACACCTAAGAAGCAGCTGCCTGCTACTTTTCAAAGATGGGGCGTTGCCGAAGATAGCTTGCTTTCCAGTTCTAGTGCTCCCATAAAGCTGATGAACGTTGAAACCAAGCATACTAGAACTATGGGTGACATTTTTGTCCAACATTCTCAGAAGTTGGAACTATTCAGAAATGTCTTAAGGAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATATGATCGATGCTGTTCAAAGGCTAGGCATCGATTTCCACTTTCAACGAGAAATCGATGAAATTCTGCACAAGCAAATGAGTATTGTATCTGCCTCTGATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACATGGTTACTTCGTGCCTGAAGATGTGTTTAACAACTTCAAGGACAGCAAAGGAACGTTCAAGCAAGTTCTGGGTGAAGACATCAAGGGATTGATGAGCTTATACGAAGCTTCGCAGCTAGATGACATTTTCGATGTTTATGGAACTCTTGATGACCTCATTCTCTTCACAGAAGCTGTTAATAGATGGGAAATTACTGCTATAGACCACTTACCAGACTATATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATCAGAAGCATGGATGGAACCCCTTACAATCTTTGAAAATTTCGTGGGCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCGAAGTCAGAAGAGTACTTGAAGAACGGCATCGTTTCTTCTGGGGTTAATGTGGTTCTAGTCCACATGTTTTTTATCTTGGGTCAAAACATAACCAGAAAGAGTGTGGAGTTGTTGAATGAAACTCCAGCCATGATATCGTCCTCAGCTGCAATTCTTCGACTCTGGGACGATTTAGGCAGTGCAAAGGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATGAAGGCTGTTCCATTGAGGAGGCACGAGAAAAGACGATTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAACTGCTCTCTCCAAATCCATTTCCAGCAACATTCACATTGGCTTCTCTTAATCTCGCAAGAATGATCCCCTTGATGTATAGCTACGATGGCAACCAATGCCTTCCATCTCTTAAAGAGTATATGAAACTGATGTTGTATGAGACTGTATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

437

Amino Acids

49.74

Weight (kDa)

5.61

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	69 - 207	2.3e-37	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	187 - 365	1.4e-56	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	189 - 365	1.2e-44	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AclI	AACGTT	2 cut(s)	186, 503
AclWI	GGATC	1 cut(s)	1213
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	366, 765
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	848
AflII	CTTAAG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	897
AjnI	CCWGG	1 cut(s)	1029
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	436, 1289
AlwI	GGATC	1 cut(s)	1213
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	18, 67
ApeKI	GCWGC	8 cut(s)	85, 103, 106, 562, 717, 826, 829, 980
ApoI	RAATTY	2 cut(s)	366, 765
AseI	ATTAAT	1 cut(s)	1116
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	227, 533
AvaI	CYCGRG	1 cut(s)	15
BalI	TGGCCA	1 cut(s)	69
BauI	CACGAG	1 cut(s)	1101
BbsI	GAAGAC	2 cut(s)	3, 531
Bbv12I	GWGCWC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	976
BbvI	GCAGC	8 cut(s)	93, 97, 115, 574, 704, 816, 838, 967
BccI	CCATC	7 cut(s)	120, 627, 735, 1028, 1037, 1235, 1267
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	1031
BcoDI	GTCTC	2 cut(s)	436, 1289
BfaI	CTAG	6 cut(s)	162, 204, 284, 329, 566, 890
BfmI	CTRYAG	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	8 cut(s)	86, 104, 107, 563, 718, 827, 830, 981
BlsI	GCNGC	8 cut(s)	87, 105, 108, 564, 719, 828, 831, 982
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	746
BmrFI	CCNGG	1 cut(s)	1031
BmsI	GCATC	6 cut(s)	14, 277, 304, 342, 827, 870
BpiI	GAAGAC	2 cut(s)	3, 531
BplI	GAGNNNNNCTC	2 cut(s)	1143, 1175
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	976
Bsa29I	ATCGAT	3 cut(s)	312, 336, 360
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	1031
BseCI	ATCGAT	3 cut(s)	312, 336, 360
BseGI	GGATG	3 cut(s)	746, 1027, 1039
BseMI	GCAATG	1 cut(s)	793
BseMII	CTCAG	3 cut(s)	251, 431, 990
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	1109
BseXI	GCAGC	8 cut(s)	93, 97, 115, 574, 704, 816, 838, 967
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	20, 69
BshVI	ATCGAT	3 cut(s)	312, 336, 360
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	1013
BsmAI	GTCTC	2 cut(s)	436, 1289
BsmFI	GGGAC	1 cut(s)	1013
BsnI	GGCC	2 cut(s)	20, 69
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	309, 406, 1218
BspANI	GGCC	2 cut(s)	20, 69
BspCNI	CTCAG	3 cut(s)	250, 432, 989
BspDI	ATCGAT	3 cut(s)	312, 336, 360
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	746
BspPI	GGATC	1 cut(s)	1213
BspTI	CTTAAG	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	793
BsrI	ACTGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	309, 406, 1218
BssSI	CACGAG	1 cut(s)	1101
Bst2BI	CACGAG	1 cut(s)	1101
Bst2UI	CCWGG	1 cut(s)	1031
Bst4CI	ACNGT	1 cut(s)	1300
Bst6I	CTCTTC	2 cut(s)	617, 837
BstAFI	CTTAAG	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	1251
BstC8I	GCNNGC	2 cut(s)	111, 149
BstDEI	CTNAG	5 cut(s)	96, 237, 440, 976, 1066
BstF5I	GGATG	3 cut(s)	746, 1027, 1039
BstKTI	GATC	3 cut(s)	312, 409, 1221
BstMAI	GTCTC	2 cut(s)	436, 1289
BstMBI	GATC	3 cut(s)	309, 406, 1218
BstMWI	GCNNNNNNNGC	2 cut(s)	1242, 1251
BstNI	CCWGG	1 cut(s)	1031
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	1029
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	8 cut(s)	93, 97, 115, 574, 704, 816, 838, 967
BstV2I	GAAGAC	2 cut(s)	3, 531
Bsu15I	ATCGAT	3 cut(s)	312, 336, 360
BsuRI	GGCC	2 cut(s)	20, 69
BsuTUI	ATCGAT	3 cut(s)	312, 336, 360
BtsCI	GGATG	3 cut(s)	746, 1027, 1039
BtsI	GCAGTG	1 cut(s)	1018
BtsIMutI	CAGTG	1 cut(s)	1018
Cac8I	GCNNGC	2 cut(s)	111, 149
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	3 cut(s)	312, 336, 360
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	7 cut(s)	82, 413, 449, 737, 898, 964, 1076
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	5 cut(s)	96, 237, 440, 976, 1066
DpnI	GATC	3 cut(s)	311, 408, 1220
DpnII	GATC	3 cut(s)	309, 406, 1218
DraI	TTTAAA	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	617, 837
EarI	CTCTTC	2 cut(s)	617, 837
Eco32I	GATATC	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	1029
EcoRV	GATATC	1 cut(s)	969
EcoT22I	ATGCAT	1 cut(s)	793
FaeI	CATG	7 cut(s)	85, 416, 452, 740, 901, 967, 1079
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	1013
FatI	CATG	7 cut(s)	81, 412, 448, 736, 897, 963, 1075
Fnu4HI	GCNGC	8 cut(s)	86, 104, 107, 563, 718, 827, 830, 981
FokI	GGATG	3 cut(s)	753, 1034, 1046
Fsp4HI	GCNGC	8 cut(s)	86, 104, 107, 563, 718, 827, 830, 981
FspBI	CTAG	6 cut(s)	162, 204, 284, 329, 566, 890
GluI	GCNGC	8 cut(s)	86, 104, 107, 563, 718, 827, 830, 981
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	20, 69
Hin1II	CATG	7 cut(s)	85, 416, 452, 740, 901, 967, 1079
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	778, 993
HphI	GGTGA	2 cut(s)	227, 533
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188I	TCNGA	6 cut(s)	240, 257, 403, 732, 841, 1129
Hpy188III	TCNNGA	2 cut(s)	413, 596
Hpy8I	GTNNAC	1 cut(s)	895
HpyAV	CCTTC	4 cut(s)	31, 290, 1073, 1265
HpyCH4III	ACNGT	1 cut(s)	1300
HpyCH4IV	ACGT	2 cut(s)	186, 503
HpyCH4V	TGCA	8 cut(s)	85, 373, 422, 720, 786, 791, 983, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1242, 1251
HpyF3I	CTNAG	5 cut(s)	96, 237, 440, 976, 1066
HpySE526I	ACGT	2 cut(s)	186, 503
Hsp92II	CATG	7 cut(s)	85, 416, 452, 740, 901, 967, 1079
Kzo9I	GATC	3 cut(s)	309, 406, 1218
LmnI	GCTCC	2 cut(s)	49, 172
Lsp1109I	GCAGC	8 cut(s)	93, 97, 115, 574, 704, 816, 838, 967
LweI	GCATC	6 cut(s)	14, 277, 304, 342, 827, 870
MaeI	CTAG	6 cut(s)	162, 204, 284, 329, 566, 890
MaeII	ACGT	2 cut(s)	186, 503
MaeIII	GTNAC	2 cut(s)	215, 452
MalI	GATC	3 cut(s)	311, 408, 1220
MboI	GATC	3 cut(s)	309, 406, 1218
MhlI	GDGCHC	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	5 cut(s)	51, 366, 639, 765, 984
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	787, 987
MmeI	TCCRAC	2 cut(s)	225, 253
MnlI	CCTC	7 cut(s)	409, 409, 614, 985, 1063, 1087, 1090
Mox20I	TGGCCA	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	793
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	8 cut(s)	27, 266, 477, 627, 879, 1116, 1203, 1266
Msp20I	TGGCCA	1 cut(s)	69
MspA1I	CMGCKG	4 cut(s)	106, 717, 829, 980
MspCI	CTTAAG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	2 cut(s)	1242, 1251
NdeII	GATC	3 cut(s)	309, 406, 1218
NlaIII	CATG	7 cut(s)	85, 416, 452, 740, 901, 967, 1079
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	1 cut(s)	901
PagI	TCATGA	1 cut(s)	412
PciI	ACATGT	1 cut(s)	897
PkrI	GCNGC	8 cut(s)	87, 105, 108, 564, 719, 828, 831, 982
PleI	GAGTC	2 cut(s)	786, 987
PpsI	GAGTC	2 cut(s)	786, 987
PscI	ACATGT	1 cut(s)	897
PshBI	ATTAAT	1 cut(s)	1116
Psp1406I	AACGTT	2 cut(s)	186, 503
Psp6I	CCWGG	1 cut(s)	1029
PspGI	CCWGG	1 cut(s)	1029
PspN4I	GGNNCC	1 cut(s)	746
PspPI	GGNCC	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	4 cut(s)	106, 717, 829, 980
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
SaqAI	TTAA	8 cut(s)	27, 266, 477, 627, 879, 1116, 1203, 1266
SatI	GCNGC	8 cut(s)	86, 104, 107, 563, 718, 827, 830, 981
Sau3AI	GATC	3 cut(s)	309, 406, 1218
Sau96I	GGNCC	1 cut(s)	18
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	2 cut(s)	787, 987
ScrFI	CCNGG	1 cut(s)	1031
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	6 cut(s)	14, 277, 304, 342, 827, 870
SfcI	CTRYAG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	5 cut(s)	51, 366, 639, 765, 984
SspMI	CTAG	6 cut(s)	162, 204, 284, 329, 566, 890
StyD4I	CCNGG	1 cut(s)	1029
TaaI	ACNGT	1 cut(s)	1300
TaiI	ACGT	2 cut(s)	189, 506
TaqI	TCGA	6 cut(s)	312, 336, 360, 433, 579, 991
TasI	AATT	5 cut(s)	51, 366, 639, 765, 984
TatI	WGTACW	1 cut(s)	846
Tru1I	TTAA	8 cut(s)	27, 266, 477, 627, 879, 1116, 1203, 1266
Tru9I	TTAA	8 cut(s)	27, 266, 477, 627, 879, 1116, 1203, 1266
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	8 cut(s)	85, 103, 106, 562, 717, 826, 829, 980
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	9 cut(s)	197, 378, 401, 686, 723, 966, 1092, 1146, 1292
TspRI	CASTG	1 cut(s)	1018
Vha464I	CTTAAG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	1116
XapI	RAATTY	2 cut(s)	366, 765
XceI	RCATGY	1 cut(s)	901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XspI	CTAG	6 cut(s)	162, 204, 284, 329, 566, 890
ZrmI	AGTACT	1 cut(s)	848
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.