MD10G1310200.v1.1

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
39487004 .. 39496405
9402 bp
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UTR
Exon/CDS
Intron
MD10G1310200.v1.1.491

Sequence Viewer

Length: 1392 bp
ATGGCACACTTCCTTCAAGCTCACTCTGCTTCCTCCAAGGGACAAGTTATTGGCGACCTTCAGGTTCGCTATGCAAAGAAATTGAAGGAATTGAAGGATGCACTCGCAAACATCGGAGAAGATGAACAATTGATTGCGGTTGACGCCATGCAACGCCTAGGCCAATGCACGAGAGCTTATGGTGATGAAGGCAGTGATGAACTTGGTGTGGTTTCACTTCGTTTTCGACTACTGAGACAACAAGGTTATCATGTAACCACAGATGCAATATTTAATAAGTTCAAGAACAACAAGGAAGTCGACATAAGCGGATTAGTAGGATTATATGAAGCATCTCATTTGAGCTTCCCAGGAGAAGAGTCACTTGATGAAGCTGGAAGGCGAAGCCACCAGCTTCTCACGGATTGGATGAAAAACAACCTCGATGATCATCAAGCTTCATCCTTCGCGTACTCATTAGAGCATCCTTATCACAAGAGCTTGACAAGATTCATGGCTAAGAACTACTTAAATAATTTCGAAGGGAAGGAGAAATGGGTCAATGTTTTGCGGGAGCTAGCAAAACTAGAGTTCAACATGGTTGAATCTCTAATCCGAAATGAAGTTCAACAAGTATCCAAGTGGTGGAAAGAACTAGGCTTGACTAAGGAGTTGAAGTTCGTGAGAGACCAGCCAATTAAATGGTATACGTGGCCGATGGCATGCCTAGCAGATCCAAGCTTATCAGAGGAAAGGGTTGAACTCACAAAATCGATCTCTCTTGTCTACATAATTGACGATATTTTTGATGTTCAGGGCACCCTCGATGAACTCATTCTCTTCACAGCTGCAGTTGAGAGGCACTTGCCAAAAAGTGAAGAGTACTTGAACAACGGGTTCATCAGTTCAGGGGTGCATGTGGTTCTAACACATGCATTCTTCTTACTGGGTCAAGGTATAAGCAAGGAAACTGTACGTATTCTGGACAACATCAACATATCTAGCATTATATCTTCAACCGAAAAAATTCTTCGGCTATGGGATGACTCTGGAAGTGCCAAGTTTCGTACTTGTATTTTGATATGGTTAGATGAGGACCAAGATGGAAATGATAGTTCATACATAGAGTGTTACATGAATGAAAATCAAGGTTGTTCAGAGGAAGATGCACGAGCATTCGTTGTCCATAGGATTTCGGAAGAATGGAAGTTCCTCAACCAAGAATGTTTGTCTGCATCAAATCCATTTTCAGCATCCTTTATAAAACTTGCTCTTAATGTTGCTAGAATGGTCCCATTGATGTATGATTATAATTCTCAACATAGCCTTCCAAGCCTTGTGGAGAATATGAAGTCACTGCTTTCTGATAGTTTTCTTGCACAAGACTTAAGTAACCAGCGCAGCCAAGCATAG

Protein Analysis

464

Amino Acids

52.83

Weight (kDa)

5.24

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 60 - 144 1.2e-19 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 210 - 280 1.3e-20 Terpene synthase family, metal binding domain
Terpene_synth_C PF03936 280 - 396 1.3e-19 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 280 - 396 3.6e-18 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1241, 1290
AccB1I GGYRCC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 624
AccI GTMKAC 3 cut(s) 300, 686, 765
AccII CGCG 1 cut(s) 449
AciI CCGC 3 cut(s) 137, 309, 550
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 692
AcsI RAATTY 1 cut(s) 1005
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 4 cut(s) 452, 863, 954, 1048
AfiI CCNNNNNNNGG 1 cut(s) 624
AflII CTTAAG 1 cut(s) 1366
AjnI CCWGG 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 641, 673
Alw26I GTCTC 2 cut(s) 229, 660
AlwI GGATC 1 cut(s) 707
AoxI GGCC 2 cut(s) 160, 692
ApeKI GCWGC 2 cut(s) 827, 1380
ApoI RAATTY 1 cut(s) 1005
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
Asp700I GAANNNNTTC 2 cut(s) 813, 1005
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 1 cut(s) 1380
AspS9I GGNCC 2 cut(s) 1075, 1270
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 519
AsuNHI GCTAGC 1 cut(s) 556
AvaII GGWCC 2 cut(s) 1075, 1270
AvrII CCTAGG 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 800
BanI GGYRCC 1 cut(s) 797
BauI CACGAG 2 cut(s) 169, 1149
BbvI GCAGC 1 cut(s) 814
BccI CCATC 2 cut(s) 691, 1076
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 625
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 229, 660
BfaI CTAG 7 cut(s) 158, 557, 566, 635, 707, 981, 1263
BfmI CTRYAG 1 cut(s) 828
BfrI CTTAAG 1 cut(s) 1366
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 2 cut(s) 828, 1381
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 829, 1382
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 2 cut(s) 1075, 1270
BmgT120I GGNCC 2 cut(s) 1075, 1270
BmiI GGNNCC 2 cut(s) 799, 1272
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 935
BmsI GCATC 7 cut(s) 88, 253, 341, 472, 1135, 1223, 1241
BmtI GCTAGC 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 935
Bpu14I TTCGAA 1 cut(s) 519
Bsa29I ATCGAT 1 cut(s) 752
BsaAI YACGTR 2 cut(s) 690, 956
BsaBI GATNNNNATC 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 36, 157, 349
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 930
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 752
BseDI CCNNGG 3 cut(s) 36, 157, 349
BseGI GGATG 6 cut(s) 103, 414, 440, 463, 1027, 1232
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 930
BseSI GKGCMC 1 cut(s) 800
BseXI GCAGC 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 2 cut(s) 162, 694
BshNI GGYRCC 1 cut(s) 797
BshVI ATCGAT 1 cut(s) 752
BslFI GGGAC 2 cut(s) 54, 1256
BslI CCNNNNNNNGG 1 cut(s) 624
BsmAI GTCTC 2 cut(s) 229, 660
BsmFI GGGAC 2 cut(s) 54, 1256
BsmI GAATGC 2 cut(s) 914, 1154
BsnI GGCC 2 cut(s) 162, 694
Bso31I GGTCTC 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 3 cut(s) 427, 712, 753
BspACI CCGC 3 cut(s) 137, 309, 550
BspANI GGCC 2 cut(s) 162, 694
BspCNI CTCAG 1 cut(s) 225
BspDI ATCGAT 1 cut(s) 752
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 799, 1272
BspMAI CTGCAG 1 cut(s) 832
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 797
BspTI CTTAAG 1 cut(s) 1366
BspTNI GGTCTC 1 cut(s) 660
BsrI ACTGG 1 cut(s) 930
BssECI CCNNGG 3 cut(s) 36, 157, 349
BssMI GATC 3 cut(s) 427, 712, 753
BssNAI GTATAC 1 cut(s) 687
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 2 cut(s) 169, 1149
BssT1I CCWWGG 2 cut(s) 36, 157
Bst1107I GTATAC 1 cut(s) 687
Bst2BI CACGAG 2 cut(s) 169, 1149
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 952
Bst6I CTCTTC 3 cut(s) 351, 824, 852
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 1366
BstBAI YACGTR 2 cut(s) 690, 956
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 558, 703
BstDEI CTNAG 3 cut(s) 233, 498, 645
BstF5I GGATG 6 cut(s) 103, 414, 440, 463, 1027, 1232
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 1380
BstKTI GATC 3 cut(s) 430, 715, 756
BstMAI GTCTC 2 cut(s) 229, 660
BstMBI GATC 3 cut(s) 427, 712, 753
BstMWI GCNNNNNNNGC 4 cut(s) 26, 143, 707, 1311
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 3 cut(s) 705, 899, 914
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 828
BstSLI GKGCMC 1 cut(s) 800
BstSNI TACGTA 1 cut(s) 956
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 814
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 681
BstYI RGATCY 1 cut(s) 712
BstZ17I GTATAC 1 cut(s) 687
Bsu15I ATCGAT 1 cut(s) 752
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 2 cut(s) 162, 694
BsuTUI ATCGAT 1 cut(s) 752
BtsCI GGATG 6 cut(s) 103, 414, 440, 463, 1027, 1232
BtsI GCAGTG 2 cut(s) 199, 1334
BtsIMutI CAGTG 2 cut(s) 199, 1334
Cac8I GCNNGC 2 cut(s) 558, 703
CfoI GCGC 1 cut(s) 1380
Cfr13I GGNCC 2 cut(s) 1075, 1270
ClaI ATCGAT 1 cut(s) 752
CseI GACGC 1 cut(s) 152
Csp6I GTAC 4 cut(s) 451, 862, 953, 1047
CspCI CAANNNNNGTGG 2 cut(s) 1299, 1334
CviAII CATG 8 cut(s) 148, 251, 493, 577, 702, 896, 911, 1114
CviQI GTAC 4 cut(s) 451, 862, 953, 1047
DdeI CTNAG 3 cut(s) 233, 498, 645
DpnI GATC 3 cut(s) 429, 714, 755
DpnII GATC 3 cut(s) 427, 712, 753
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 3 cut(s) 351, 824, 852
EarI CTCTTC 3 cut(s) 351, 824, 852
Eco105I TACGTA 1 cut(s) 956
Eco130I CCWWGG 2 cut(s) 36, 157
Eco31I GGTCTC 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 1075, 1270
Eco57I CTGAAG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 36, 157
EcoT22I ATGCAT 1 cut(s) 916
ErhI CCWWGG 2 cut(s) 36, 157
FaeI CATG 8 cut(s) 151, 254, 496, 580, 705, 899, 914, 1117
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 491, 523
FaqI GGGAC 2 cut(s) 54, 1256
FatI CATG 8 cut(s) 147, 250, 492, 576, 701, 895, 910, 1113
FauI CCCGC 1 cut(s) 543
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 3 cut(s) 300, 686, 765
Fnu4HI GCNGC 2 cut(s) 828, 1381
FokI GGATG 6 cut(s) 110, 421, 427, 450, 1034, 1219
Fsp4HI GCNGC 2 cut(s) 828, 1381
FspBI CTAG 7 cut(s) 158, 557, 566, 635, 707, 981, 1263
GlaI GCGC 1 cut(s) 1379
GluI GCNGC 2 cut(s) 828, 1381
HaeIII GGCC 2 cut(s) 162, 694
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 1380
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 8 cut(s) 151, 254, 496, 580, 705, 899, 914, 1117
Hin6I GCGC 1 cut(s) 1378
HinP1I GCGC 1 cut(s) 1378
HincII GTYRAC 2 cut(s) 142, 301
HindII GTYRAC 2 cut(s) 142, 301
HindIII AAGCTT 2 cut(s) 435, 718
HinfI GANTC 4 cut(s) 359, 489, 584, 1025
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 4 cut(s) 142, 301, 687, 766
Hpy188I TCNGA 6 cut(s) 116, 596, 727, 1138, 1177, 1345
Hpy188III TCNNGA 4 cut(s) 283, 661, 962, 1029
Hpy8I GTNNAC 4 cut(s) 142, 301, 687, 766
HpyCH4III ACNGT 1 cut(s) 952
HpyCH4IV ACGT 2 cut(s) 689, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 143, 707, 1311
HpyF3I CTNAG 3 cut(s) 233, 498, 645
HpySE526I ACGT 2 cut(s) 689, 955
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 8 cut(s) 151, 254, 496, 580, 705, 899, 914, 1117
HspAI GCGC 1 cut(s) 1378
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 427, 712, 753
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 7 cut(s) 88, 253, 341, 472, 1135, 1223, 1241
MaeI CTAG 7 cut(s) 158, 557, 566, 635, 707, 981, 1263
MaeII ACGT 2 cut(s) 689, 955
MaeIII GTNAC 5 cut(s) 253, 360, 1109, 1332, 1370
MalI GATC 3 cut(s) 429, 714, 755
MboI GATC 3 cut(s) 427, 712, 753
MboII GAAGA 9 cut(s) 131, 368, 811, 869, 910, 984, 1001, 1154, 1190
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 8 cut(s) 80, 89, 128, 514, 675, 771, 1005, 1291
MlyI GAGTC 2 cut(s) 368, 1019
MnlI CCTC 8 cut(s) 43, 431, 721, 812, 831, 1066, 1132, 1202
Mph1103I ATGCAT 1 cut(s) 916
MroXI GAANNNNTTC 2 cut(s) 813, 1005
MseI TTAA 5 cut(s) 273, 509, 678, 1254, 1367
MspA1I CMGCKG 1 cut(s) 827
MspCI CTTAAG 1 cut(s) 1366
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 914, 1154
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 26, 143, 707, 1311
NdeII GATC 3 cut(s) 427, 712, 753
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 8 cut(s) 151, 254, 496, 580, 705, 899, 914, 1117
NlaIV GGNNCC 2 cut(s) 799, 1272
NmuCI GTSAC 2 cut(s) 360, 1332
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 3 cut(s) 705, 899, 914
NspV TTCGAA 1 cut(s) 519
PaeI GCATGC 1 cut(s) 705
PctI GAATGC 2 cut(s) 914, 1154
PdmI GAANNNNTTC 2 cut(s) 813, 1005
PfeI GAWTC 2 cut(s) 489, 584
PflMI CCANNNNNTGG 1 cut(s) 624
PkrI GCNGC 2 cut(s) 829, 1382
PleI GAGTC 2 cut(s) 367, 1019
PpsI GAGTC 2 cut(s) 367, 1019
Ppu21I YACGTR 2 cut(s) 690, 956
PsiI TTATAA 2 cut(s) 1241, 1290
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 799, 1272
PspPI GGNCC 2 cut(s) 1075, 1270
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 1 cut(s) 712
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 4 cut(s) 452, 863, 954, 1048
RsaNI GTAC 4 cut(s) 451, 862, 953, 1047
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 5 cut(s) 273, 509, 678, 1254, 1367
SatI GCNGC 2 cut(s) 828, 1381
Sau3AI GATC 3 cut(s) 427, 712, 753
Sau96I GGNCC 2 cut(s) 1075, 1270
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 2 cut(s) 368, 1019
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 7 cut(s) 88, 253, 341, 472, 1135, 1223, 1241
SfcI CTRYAG 1 cut(s) 828
SfuI TTCGAA 1 cut(s) 519
SinI GGWCC 2 cut(s) 1075, 1270
SmlI CTYRAG 1 cut(s) 1366
SmoI CTYRAG 1 cut(s) 1366
SnaBI TACGTA 1 cut(s) 956
SphI GCATGC 1 cut(s) 705
Sse9I AATT 8 cut(s) 80, 89, 128, 514, 675, 771, 1005, 1291
SsiI CCGC 3 cut(s) 137, 309, 550
SspI AATATT 1 cut(s) 270
SspMI CTAG 7 cut(s) 158, 557, 566, 635, 707, 981, 1263
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 36, 157
TaaI ACNGT 1 cut(s) 952
TaiI ACGT 2 cut(s) 692, 958
TaqI TCGA 6 cut(s) 226, 300, 423, 519, 752, 804
TasI AATT 8 cut(s) 80, 89, 128, 514, 675, 771, 1005, 1291
TatI WGTACW 1 cut(s) 861
TfiI GAWTC 2 cut(s) 489, 584
Tru1I TTAA 5 cut(s) 273, 509, 678, 1254, 1367
Tru9I TTAA 5 cut(s) 273, 509, 678, 1254, 1367
TscAI CASTG 2 cut(s) 199, 1341
TseFI GTSAC 2 cut(s) 360, 1332
TseI GCWGC 2 cut(s) 827, 1380
Tsp45I GTSAC 2 cut(s) 360, 1332
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 199, 1341
Van91I CCANNNNNTGG 1 cut(s) 624
Vha464I CTTAAG 1 cut(s) 1366
VpaK11BI GGWCC 2 cut(s) 1075, 1270
XapI RAATTY 1 cut(s) 1005
XceI RCATGY 3 cut(s) 705, 899, 914
XmaJI CCTAGG 1 cut(s) 157
XmiI GTMKAC 3 cut(s) 300, 686, 765
XmnI GAANNNNTTC 2 cut(s) 813, 1005
XspI CTAG 7 cut(s) 158, 557, 566, 635, 707, 981, 1263
ZrmI AGTACT 1 cut(s) 863
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.