Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030338.1

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 720

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 629 bp

aggaaagcaatgggatgttcaagcaagctttgggtgaagacatcaagggattgatgagcttatatgaagcttcacatctaggtacagaaggagaagatacacttgttgaagctggaaaatatagtgcccatctgctaaagacctctttgccacatcttgatcatcatcaagccagaattgtgggcaatacattggggaatcctcatcacaaaagcttggcctcattcatggctaggaacttttttgttacttctcaaggaaccaatacatggttaaatttgctaaaagaagtagcaaaaacagatttcagtatggtccagtctttgtaccagaatgaaattgttcaaatctccaaatggtggaaggagctaggattggcaaaggaactgaagtttgcaagagaccaaccactgaaatggtacatttggtccatggcatgcctagcagatccaaagttatcagaggagagggttgagctcacaaaacccatctcatttatctattttatagatgacatttttgatgtttatggaacccttaatgacctcattctcttcacagaagctgttaatagctatatactcgtcaatgatgaaagaaatttagaattgataccaattcattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

208

Amino Acids

23.82

Weight (kDa)

5.46

Isoelectric Point (pI)

22.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	269, 359
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	276, 600
AcuI	CTGAAG	1 cut(s)	409
AfaI	GTAC	3 cut(s)	84, 328, 421
AfiI	CCNNNNNNNGG	2 cut(s)	269, 359
AgsI	TTSAA	3 cut(s)	21, 109, 346
AluBI	AGCT	9 cut(s)	28, 59, 70, 112, 215, 369, 477, 565, 575
AluI	AGCT	9 cut(s)	28, 59, 70, 112, 215, 369, 477, 565, 575
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	565
AoxI	GGCC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	276, 600
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	315, 428
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	315, 428
BaeGI	GKGCMC	1 cut(s)	129
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BanII	GRGCYC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	479
BccI	CCATC	2 cut(s)	137, 496
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	4 cut(s)	79, 233, 370, 442
Bme18I	GGWCC	2 cut(s)	315, 428
BmgT120I	GGNCC	2 cut(s)	315, 428
BmiI	GGNNCC	2 cut(s)	261, 534
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 359
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	269, 359
BseMI	GCAATG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	129
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	269, 359
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	129, 479
Bsp143I	GATC	2 cut(s)	159, 447
Bsp19I	CCATGG	1 cut(s)	431
BspANI	GGCC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	261, 534
BspPI	GGATC	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	159, 447
BssT1I	CCWWGG	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	559
BstC8I	GCNNGC	2 cut(s)	26, 438
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	162, 450
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	159, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	440
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	447
BstXI	CCANNNNNNTGG	2 cut(s)	180, 416
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	26, 438
CaiI	CAGNNNCTG	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	315, 428
Csp6I	GTAC	3 cut(s)	83, 327, 420
CviAII	CATG	4 cut(s)	228, 269, 432, 437
CviQI	GTAC	3 cut(s)	83, 327, 420
DpnI	GATC	2 cut(s)	161, 449
DpnII	GATC	2 cut(s)	159, 447
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	315, 428
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	231, 272, 435, 440
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	4 cut(s)	227, 268, 431, 436
FbaI	TGATCA	1 cut(s)	159
FokI	GGATG	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	479
FspBI	CTAG	4 cut(s)	79, 233, 370, 442
HaeIII	GGCC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	231, 272, 435, 440
HindIII	AAGCTT	3 cut(s)	26, 68, 213
HinfI	GANTC	1 cut(s)	198
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	82, 357
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
Hsp92II	CATG	4 cut(s)	231, 272, 435, 440
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	159, 447
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	4 cut(s)	98, 186, 331, 343
MaeI	CTAG	4 cut(s)	79, 233, 370, 442
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	161, 449
MboI	GATC	2 cut(s)	159, 447
MboII	GAAGA	3 cut(s)	49, 106, 546
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	129, 479
MluCI	AATT	6 cut(s)	176, 276, 338, 600, 607, 617
MnlI	CCTC	6 cut(s)	153, 212, 231, 456, 461, 556
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	3 cut(s)	274, 539, 569
MslI	CAYNNNNRTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	2 cut(s)	159, 447
NlaIII	CATG	4 cut(s)	231, 272, 435, 440
NlaIV	GGNNCC	2 cut(s)	261, 534
NspI	RCATGY	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	198
PflMI	CCANNNNNTGG	2 cut(s)	269, 359
Psp124BI	GAGCTC	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	261, 534
PspPI	GGNCC	2 cut(s)	315, 428
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	3 cut(s)	84, 328, 421
RsaNI	GTAC	3 cut(s)	83, 327, 420
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	274, 539, 569
Sau3AI	GATC	2 cut(s)	159, 447
Sau96I	GGNCC	2 cut(s)	315, 428
SduI	GDGCHC	2 cut(s)	129, 479
SinI	GGWCC	2 cut(s)	315, 428
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	6 cut(s)	176, 276, 338, 600, 607, 617
SspMI	CTAG	4 cut(s)	79, 233, 370, 442
SstI	GAGCTC	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	431
TasI	AATT	6 cut(s)	176, 276, 338, 600, 607, 617
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	3 cut(s)	274, 539, 569
Tru9I	TTAA	3 cut(s)	274, 539, 569
TscAI	CASTG	1 cut(s)	416
TspDTI	ATGAA	5 cut(s)	80, 216, 350, 608, 610
TspRI	CASTG	1 cut(s)	416
Van91I	CCANNNNNTGG	2 cut(s)	269, 359
VpaK11BI	GGWCC	2 cut(s)	315, 428
XapI	RAATTY	2 cut(s)	276, 600
XceI	RCATGY	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	4 cut(s)	79, 233, 370, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.