Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Forward (+)

3046153 .. 3047622

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGCTTATATGAAGCTTCACAGCTAGGTACAGAAGGAGAAGATACACTTTTTGAAGCTGGAAAATTTAGTGGCCATCTGCTAAAGACCTCTTTGTCACATCTTGATCATCATCAAGCCAGAATTGTGGGCAATACATTGGAGAATCCTCATCACAAAACCTTGGCCTCATTCATGGCCAGGAAGTTTTTTGTTACTTCTCAAGGCACCAATACATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAGTATGGTCCAGTCCCTGCACCAGAATGAAATAGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAGCTGAAGTTTGCGAGAGACCAACCACTGAAATGGTACATTTGGGCCATGGCATGCCTAACAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTAATGGAACCCTTGATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTACTGCTATAGACCACTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCGATGATATAACCAACGAATTCAGCTACAAGGTCTATAAGAGGCATGGATGGAACCCCTTGCAATATTTAAAAAAGATGTGGGCGAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGAAGCTGCCGAAGTCAGAAGAGTACCTGAAGAATGGCATTGTTTCTTCTGGGGTAATTGTGATTGTAGTCCACTTTCTTTTTCTCTTGGGTCAAAACATAACCAAACAGAATGTGGAGGTTTTGAATGACACTCCAGCTATTATATCGTCCACAGCAACAATTCTTCGACTTTGGGACGACTTGGGAAGTGCAAAGGATGAGAACCAGGATGGGAATGATGGGTCGTATGTTAGGTGCTACTTAGAGGAACATCAAGGTTGTTCCATTGAGGAGGCACGAGAAAAGACTGTTAATATGATTTCAGATGAATGGAAGAAACTGAACAGAGAATTGCTCTCTCCTAATCCATTTCCAGCAACATTCACTTCAGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAACTATGATGGCAACCAATGCCTTCCATCTCTTAAAGAGTATATGAAATCAATGTTGTATGAGACTGTATCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

399

Amino Acids

45.77

Weight (kDa)

5.62

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	1 - 35	4.1e-06	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	104 - 344	3.6e-86	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	146 - 344	8.1e-54	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	2 cut(s)	216, 306
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	2 cut(s)	73, 177
AcsI	RAATTY	3 cut(s)	65, 223, 599
AcuI	CTGAAG	3 cut(s)	356, 761, 1065
AfaI	GTAC	3 cut(s)	31, 368, 737
AfiI	CCNNNNNNNGG	2 cut(s)	216, 306
AgsI	TTSAA	4 cut(s)	56, 293, 574, 838
AjnI	CCWGG	2 cut(s)	179, 918
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	342, 1178
AlwI	GGATC	1 cut(s)	389
AlwNI	CAGNNNCTG	2 cut(s)	271, 512
AoxI	GGCC	4 cut(s)	73, 165, 177, 375
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	3 cut(s)	65, 223, 599
Asp700I	GAANNNNTTC	2 cut(s)	288, 495
AspS9I	GGNCC	3 cut(s)	262, 375, 1108
AvaII	GGWCC	2 cut(s)	262, 1108
BalI	TGGCCA	2 cut(s)	75, 179
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	8 cut(s)	84, 443, 516, 624, 917, 926, 1124, 1156
BciT130I	CCWGG	2 cut(s)	181, 920
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	342, 1178
BfaI	CTAG	2 cut(s)	26, 317
BfmI	CTRYAG	1 cut(s)	537
BisI	GCNGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	181, 920
Bme18I	GGWCC	2 cut(s)	262, 1108
BmgT120I	GGNCC	3 cut(s)	262, 375, 1108
BmiI	GGNNCC	4 cut(s)	208, 481, 635, 1110
BmrFI	CCNGG	2 cut(s)	181, 920
BmsI	GCATC	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	1032, 1064
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	162, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 306
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	181, 920
BseDI	CCNNGG	2 cut(s)	162, 378
BseGI	GGATG	3 cut(s)	635, 916, 928
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	216, 306
BseMI	GCAATG	1 cut(s)	682
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	425, 998
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	4 cut(s)	75, 167, 179, 377
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	426
BslFI	GGGAC	3 cut(s)	253, 902, 1094
BslI	CCNNNNNNNGG	2 cut(s)	216, 306
BsmAI	GTCTC	2 cut(s)	342, 1178
BsmFI	GGGAC	3 cut(s)	253, 902, 1094
BsnI	GGCC	4 cut(s)	75, 167, 179, 377
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	106, 394
Bsp19I	CCATGG	1 cut(s)	378
BspANI	GGCC	4 cut(s)	75, 167, 179, 377
BspLI	GGNNCC	4 cut(s)	208, 481, 635, 1110
BspPI	GGATC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	682
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	162, 378
BssMI	GATC	2 cut(s)	106, 394
BssSI	CACGAG	1 cut(s)	990
BssT1I	CCWWGG	2 cut(s)	162, 378
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	2 cut(s)	181, 920
Bst4CI	ACNGT	2 cut(s)	1003, 1189
Bst6I	CTCTTC	2 cut(s)	506, 726
BstAPI	GCANNNNNTGC	1 cut(s)	1140
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	327, 955
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	635, 916, 928
BstKTI	GATC	2 cut(s)	109, 397
BstMAI	GTCTC	2 cut(s)	342, 1178
BstMBI	GATC	2 cut(s)	106, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	1140
BstNI	CCWGG	2 cut(s)	181, 920
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	179, 918
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	2 cut(s)	127, 363
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	75, 167, 179, 377
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	635, 916, 928
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	385
CaiI	CAGNNNCTG	2 cut(s)	271, 512
Cfr13I	GGNCC	3 cut(s)	262, 375, 1108
Csp6I	GTAC	3 cut(s)	30, 367, 736
CviAII	CATG	6 cut(s)	175, 216, 379, 384, 559, 626
CviQI	GTAC	3 cut(s)	30, 367, 736
DdeI	CTNAG	2 cut(s)	327, 955
DpnI	GATC	2 cut(s)	108, 396
DpnII	GATC	2 cut(s)	106, 394
DraI	TTTAAA	1 cut(s)	651
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	2 cut(s)	73, 177
Eam1104I	CTCTTC	2 cut(s)	506, 726
EarI	CTCTTC	2 cut(s)	506, 726
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	162, 378
Eco24I	GRGCYC	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	262, 1108
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	3 cut(s)	356, 761, 1065
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	179, 918
EcoT14I	CCWWGG	2 cut(s)	162, 378
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	162, 378
FaeI	CATG	6 cut(s)	178, 219, 382, 387, 562, 629
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 554, 586
FaqI	GGGAC	3 cut(s)	253, 902, 1094
FatI	CATG	6 cut(s)	174, 215, 378, 383, 558, 625
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	719
FokI	GGATG	3 cut(s)	642, 923, 935
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	719
FspBI	CTAG	2 cut(s)	26, 317
GluI	GCNGC	1 cut(s)	719
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	4 cut(s)	75, 167, 179, 377
Hin1II	CATG	6 cut(s)	178, 219, 382, 387, 562, 629
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	145, 667
Hpy166II	GTNNAC	2 cut(s)	784, 864
Hpy188I	TCNGA	3 cut(s)	409, 730, 1018
Hpy188III	TCNNGA	2 cut(s)	104, 581
Hpy8I	GTNNAC	2 cut(s)	784, 864
HpyAV	CCTTC	3 cut(s)	29, 304, 1154
HpyCH4III	ACNGT	2 cut(s)	1003, 1189
HpyCH4V	TGCA	5 cut(s)	274, 643, 675, 680, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1140
HpyF3I	CTNAG	2 cut(s)	327, 955
Hsp92II	CATG	6 cut(s)	178, 219, 382, 387, 562, 629
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	106, 394
LmnI	GCTCC	2 cut(s)	313, 331
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	2 cut(s)	26, 317
MaeIII	GTNAC	2 cut(s)	96, 193
MalI	GATC	2 cut(s)	108, 396
MboI	GATC	2 cut(s)	106, 394
MboII	GAAGA	8 cut(s)	53, 493, 574, 743, 750, 754, 869, 1039
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	2 cut(s)	75, 179
MluCI	AATT	7 cut(s)	65, 123, 223, 599, 768, 873, 1043
MluNI	TGGCCA	2 cut(s)	75, 179
MlyI	GAGTC	1 cut(s)	676
Mox20I	TGGCCA	2 cut(s)	75, 179
Mph1103I	ATGCAT	1 cut(s)	682
MroXI	GAANNNNTTC	2 cut(s)	288, 495
MscI	TGGCCA	2 cut(s)	75, 179
MseI	TTAA	7 cut(s)	221, 474, 516, 650, 1005, 1092, 1155
MslI	CAYNNNNRTG	2 cut(s)	279, 361
Msp20I	TGGCCA	2 cut(s)	75, 179
MspR9I	CCNGG	2 cut(s)	181, 920
MvaI	CCWGG	2 cut(s)	181, 920
MwoI	GCNNNNNNNGC	1 cut(s)	1140
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	106, 394
NlaIII	CATG	6 cut(s)	178, 219, 382, 387, 562, 629
NlaIV	GGNNCC	4 cut(s)	208, 481, 635, 1110
NmuCI	GTSAC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	387
PdmI	GAANNNNTTC	2 cut(s)	288, 495
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	2 cut(s)	216, 306
PkrI	GCNGC	1 cut(s)	720
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	179, 918
PspGI	CCWGG	2 cut(s)	179, 918
PspN4I	GGNNCC	4 cut(s)	208, 481, 635, 1110
PspPI	GGNCC	3 cut(s)	262, 375, 1108
PstNI	CAGNNNCTG	2 cut(s)	271, 512
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	3 cut(s)	31, 368, 737
RsaNI	GTAC	3 cut(s)	30, 367, 736
RseI	CAYNNNNRTG	2 cut(s)	279, 361
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	7 cut(s)	221, 474, 516, 650, 1005, 1092, 1155
SatI	GCNGC	1 cut(s)	719
Sau3AI	GATC	2 cut(s)	106, 394
Sau96I	GGNCC	3 cut(s)	262, 375, 1108
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	2 cut(s)	181, 920
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	262, 1108
SmiMI	CAYNNNNRTG	2 cut(s)	279, 361
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	7 cut(s)	65, 123, 223, 599, 768, 873, 1043
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	2 cut(s)	26, 317
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	179, 918
StyI	CCWWGG	2 cut(s)	162, 378
TaaI	ACNGT	2 cut(s)	1003, 1189
TaqI	TCGA	2 cut(s)	582, 880
TasI	AATT	7 cut(s)	65, 123, 223, 599, 768, 873, 1043
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	7 cut(s)	221, 474, 516, 650, 1005, 1092, 1155
Tru9I	TTAA	7 cut(s)	221, 474, 516, 650, 1005, 1092, 1155
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	7 cut(s)	27, 163, 297, 504, 575, 1035, 1181
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	2 cut(s)	216, 306
VpaK11BI	GGWCC	2 cut(s)	262, 1108
XapI	RAATTY	3 cut(s)	65, 223, 599
XceI	RCATGY	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmnI	GAANNNNTTC	2 cut(s)	288, 495
XspI	CTAG	2 cut(s)	26, 317
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.