Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010871.1

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Reverse (-)

94897 .. 96499

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010871.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atggcatcttcttctcaggccttctttaaattcttcaatccccaaatttgtccaacaagaatctcacatattggccactctaacctcgtacgtcttacacctaagaagcggcctacttctaaaaaatgcggcattgcccaagatcttagcttgctttccagttccagtactccaatagaactgattagctatgaaactaagcatactaaaactatggatgacatttttgtccaacattctcaaaagttggaggtattcaggcatgtactgagaaatgtagcagacctagaagcccttgaaggtttgaatatgatcgatgctgctcaacggctaggtatcgattaccactttcaacaagaaatcgacgaaattctgcacaaacagatgaatagtatatctgttcatggtgaccttcatgaggttgcacttcgctttcgactactaagacaacggggttacttggtgcctgatgatgtgtttaacaacttcaaggaaagcaatgggatgttcaagcaagctttgggtgaagacatcaagggattgatgagcttatatgaagcttcacatctaggtacagaaggagaagatacacttgttgaagctggaaaatatagtgctcatctgctaaagacctctttgccacatcttgatcatcatcaagccagaattgtgggcaatacattggggaatcctcatcacaaaagcttggcctcattcatggctaggaacttttttgttacttctcaaggaaccaatacatggttaaatttgctaaaagaagtagcaaaaacagatttcagtatggtccagtctttgtaccagaaagaaattgttcaaatctccaaatggtggaaggagctaggattggcaaaggaactgaagtttgcaagagaccaaccactgaaatggtacatttggtccatggcatgcctagcagatccaaagttatcagaggagagggttgagctcacaaaacccatctcatttatctatttgatagatgacatttttgatgtttatggaacccttaatgacctcattctcttcacagaagctgttaatagatgggatattgctgctatagaccatttaccagactacatgaagatatgcttcaaggctctctatgatatgactaatgaaatcagctgcaaggtctataaaaagcatggatggaacgccttgcaatctttgaaaaagacggtatataactgtgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

406

Amino Acids

46.62

Weight (kDa)

7.01

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	463
AccB7I	CCANNNNNTGG	2 cut(s)	759, 849
AciI	CCGC	2 cut(s)	109, 129
AclWI	GGATC	1 cut(s)	932
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	4 cut(s)	29, 45, 369, 766
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	6 cut(s)	90, 169, 267, 574, 818, 911
AfiI	CCNNNNNNNGG	3 cut(s)	418, 759, 849
Alw21I	GWGCWC	2 cut(s)	619, 969
Alw26I	GTCTC	1 cut(s)	885
AlwI	GGATC	1 cut(s)	932
AlwNI	CAGNNNCTG	1 cut(s)	1055
AoxI	GGCC	4 cut(s)	18, 73, 110, 708
ApeKI	GCWGC	3 cut(s)	320, 1076, 1149
ApoI	RAATTY	4 cut(s)	29, 45, 369, 766
Asp700I	GAANNNNTTC	1 cut(s)	831
AspS9I	GGNCC	2 cut(s)	805, 918
AsuHPI	GGTGA	2 cut(s)	419, 536
AvaII	GGWCC	2 cut(s)	805, 918
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BalI	TGGCCA	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	2 cut(s)	619, 969
BbvI	GCAGC	3 cut(s)	307, 1063, 1136
BccI	CCATC	3 cut(s)	986, 1059, 1167
BceAI	ACGGC	1 cut(s)	344
BclI	TGATCA	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	6 cut(s)	287, 332, 569, 723, 860, 932
BfmI	CTRYAG	1 cut(s)	1080
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	5 cut(s)	110, 130, 321, 1077, 1150
BlsI	GCNGC	5 cut(s)	111, 131, 322, 1078, 1151
BmcAI	AGTACT	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	805, 918
BmgT120I	GGNCC	2 cut(s)	805, 918
BmiI	GGNNCC	3 cut(s)	465, 751, 1024
BmsI	GCATC	2 cut(s)	14, 307
BpiI	GAAGAC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	729
Bsa29I	ATCGAT	2 cut(s)	315, 339
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	1 cut(s)	921
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 759, 849
Bse1I	ACTGG	3 cut(s)	159, 165, 808
Bse3DI	GCAATG	2 cut(s)	132, 505
Bse8I	GATNNNNATC	1 cut(s)	654
BseCI	ATCGAT	2 cut(s)	315, 339
BseDI	CCNNGG	1 cut(s)	921
BseGI	GGATG	3 cut(s)	223, 510, 1178
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	418, 759, 849
BseMI	GCAATG	2 cut(s)	132, 505
BseMII	CTCAG	2 cut(s)	29, 260
BseNI	ACTGG	3 cut(s)	159, 165, 808
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	3 cut(s)	307, 1063, 1136
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	4 cut(s)	20, 75, 112, 710
BshNI	GGYRCC	1 cut(s)	463
BshVI	ATCGAT	2 cut(s)	315, 339
BsiHKAI	GWGCWC	2 cut(s)	619, 969
BsiWI	CGTACG	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	418, 759, 849
BsmAI	GTCTC	1 cut(s)	885
BsnI	GGCC	4 cut(s)	20, 75, 112, 710
Bso31I	GGTCTC	1 cut(s)	885
Bsp1286I	GDGCHC	2 cut(s)	619, 969
Bsp143I	GATC	4 cut(s)	142, 312, 649, 937
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	2 cut(s)	109, 129
BspANI	GGCC	4 cut(s)	20, 75, 112, 710
BspCNI	CTCAG	2 cut(s)	28, 261
BspDI	ATCGAT	2 cut(s)	315, 339
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	465, 751, 1024
BspPI	GGATC	1 cut(s)	932
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	885
BsrDI	GCAATG	2 cut(s)	132, 505
BsrI	ACTGG	3 cut(s)	159, 165, 808
BssECI	CCNNGG	1 cut(s)	921
BssMI	GATC	4 cut(s)	142, 312, 649, 937
BssT1I	CCWWGG	1 cut(s)	921
Bst4CI	ACNGT	2 cut(s)	1204, 1214
Bst6I	CTCTTC	1 cut(s)	1049
BstC8I	GCNNGC	3 cut(s)	152, 516, 928
BstDEI	CTNAG	6 cut(s)	15, 102, 146, 198, 269, 443
BstDSI	CCRYGG	1 cut(s)	921
BstEII	GGTNACC	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	223, 510, 1178
BstKTI	GATC	4 cut(s)	145, 315, 652, 940
BstMAI	GTCTC	1 cut(s)	885
BstMBI	GATC	4 cut(s)	142, 312, 649, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNSI	RCATGY	2 cut(s)	266, 930
BstPI	GGTNACC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	1080
BstV1I	GCAGC	3 cut(s)	307, 1063, 1136
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	142, 937
BstXI	CCANNNNNNTGG	2 cut(s)	670, 906
BstYI	RGATCY	2 cut(s)	142, 937
Bsu15I	ATCGAT	2 cut(s)	315, 339
BsuRI	GGCC	4 cut(s)	20, 75, 112, 710
BsuTUI	ATCGAT	2 cut(s)	315, 339
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	223, 510, 1178
BtsIMutI	CAGTG	1 cut(s)	899
Cac8I	GCNNGC	3 cut(s)	152, 516, 928
CaiI	CAGNNNCTG	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	805, 918
ClaI	ATCGAT	2 cut(s)	315, 339
Csp6I	GTAC	6 cut(s)	89, 168, 266, 573, 817, 910
CviAII	CATG	9 cut(s)	263, 404, 416, 718, 759, 922, 927, 1102, 1169
CviQI	GTAC	6 cut(s)	89, 168, 266, 573, 817, 910
DdeI	CTNAG	6 cut(s)	15, 102, 146, 198, 269, 443
DpnI	GATC	4 cut(s)	144, 314, 651, 939
DpnII	GATC	4 cut(s)	142, 312, 649, 937
DraI	TTTAAA	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	1049
EarI	CTCTTC	1 cut(s)	1049
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	1 cut(s)	921
Eco147I	AGGCCT	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	969
Eco31I	GGTCTC	1 cut(s)	885
Eco47I	GGWCC	2 cut(s)	805, 918
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	1 cut(s)	899
Eco91I	GGTNACC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	969
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	9 cut(s)	266, 407, 419, 721, 762, 925, 930, 1105, 1172
FalI	AAGNNNNNCTT	4 cut(s)	576, 608, 1097, 1129
FatI	CATG	9 cut(s)	262, 403, 415, 717, 758, 921, 926, 1101, 1168
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	5 cut(s)	110, 130, 321, 1077, 1150
FokI	GGATG	3 cut(s)	230, 517, 1185
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	5 cut(s)	110, 130, 321, 1077, 1150
FspBI	CTAG	6 cut(s)	287, 332, 569, 723, 860, 932
GluI	GCNGC	5 cut(s)	110, 130, 321, 1077, 1150
HaeIII	GGCC	4 cut(s)	20, 75, 112, 710
Hin1II	CATG	9 cut(s)	266, 407, 419, 721, 762, 925, 930, 1105, 1172
HindIII	AAGCTT	3 cut(s)	516, 558, 703
HinfI	GANTC	2 cut(s)	60, 688
HphI	GGTGA	2 cut(s)	419, 536
Hpy188I	TCNGA	1 cut(s)	952
Hpy188III	TCNNGA	2 cut(s)	416, 647
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	5 cut(s)	31, 293, 422, 572, 847
HpyCH4III	ACNGT	2 cut(s)	1204, 1214
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	376, 425, 887, 1152, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	6 cut(s)	15, 102, 146, 198, 269, 443
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	9 cut(s)	266, 407, 419, 721, 762, 925, 930, 1105, 1172
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	142, 312, 649, 937
LmnI	GCTCC	1 cut(s)	856
Lsp1109I	GCAGC	3 cut(s)	307, 1063, 1136
LweI	GCATC	2 cut(s)	14, 307
MaeI	CTAG	6 cut(s)	287, 332, 569, 723, 860, 932
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	4 cut(s)	407, 455, 736, 1214
MalI	GATC	4 cut(s)	144, 314, 651, 939
MboI	GATC	4 cut(s)	142, 312, 649, 937
MboII	GAAGA	6 cut(s)	3, 25, 539, 596, 1036, 1117
MflI	RGATCY	2 cut(s)	142, 937
MhlI	GDGCHC	2 cut(s)	619, 969
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	6 cut(s)	29, 45, 369, 666, 766, 828
MluNI	TGGCCA	1 cut(s)	75
MmeI	TCCRAC	3 cut(s)	77, 228, 256
MnlI	CCTC	9 cut(s)	95, 244, 412, 643, 702, 721, 946, 951, 1046
Mox20I	TGGCCA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	5 cut(s)	27, 480, 764, 1029, 1059
MslI	CAYNNNNRTG	1 cut(s)	904
Msp20I	TGGCCA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	1149
MwoI	GCNNNNNNNGC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	4 cut(s)	142, 312, 649, 937
NlaIII	CATG	9 cut(s)	266, 407, 419, 721, 762, 925, 930, 1105, 1172
NlaIV	GGNNCC	3 cut(s)	465, 751, 1024
NmuCI	GTSAC	2 cut(s)	407, 1214
NspI	RCATGY	2 cut(s)	266, 930
PaeI	GCATGC	1 cut(s)	930
PagI	TCATGA	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	60, 688
Pfl23II	CGTACG	1 cut(s)	88
PflMI	CCANNNNNTGG	2 cut(s)	759, 849
PkrI	GCNGC	5 cut(s)	111, 131, 322, 1078, 1151
Psp124BI	GAGCTC	1 cut(s)	969
PspEI	GGTNACC	1 cut(s)	407
PspLI	CGTACG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	465, 751, 1024
PspPI	GGNCC	2 cut(s)	805, 918
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	2 cut(s)	142, 937
PvuII	CAGCTG	1 cut(s)	1149
RsaI	GTAC	6 cut(s)	90, 169, 267, 574, 818, 911
RsaNI	GTAC	6 cut(s)	89, 168, 266, 573, 817, 910
RseI	CAYNNNNRTG	1 cut(s)	904
SacI	GAGCTC	1 cut(s)	969
SaqAI	TTAA	5 cut(s)	27, 480, 764, 1029, 1059
SatI	GCNGC	5 cut(s)	110, 130, 321, 1077, 1150
Sau3AI	GATC	4 cut(s)	142, 312, 649, 937
Sau96I	GGNCC	2 cut(s)	805, 918
ScaI	AGTACT	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	619, 969
SfaNI	GCATC	2 cut(s)	14, 307
SfcI	CTRYAG	1 cut(s)	1080
SinI	GGWCC	2 cut(s)	805, 918
SmiMI	CAYNNNNRTG	1 cut(s)	904
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
SphI	GCATGC	1 cut(s)	930
Sse9I	AATT	6 cut(s)	29, 45, 369, 666, 766, 828
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	2 cut(s)	109, 129
SspMI	CTAG	6 cut(s)	287, 332, 569, 723, 860, 932
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	1204, 1214
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	4 cut(s)	315, 339, 363, 436
TasI	AATT	6 cut(s)	29, 45, 369, 666, 766, 828
TatI	WGTACW	2 cut(s)	167, 265
TauI	GCSGC	2 cut(s)	112, 132
TfiI	GAWTC	2 cut(s)	60, 688
Tru1I	TTAA	5 cut(s)	27, 480, 764, 1029, 1059
Tru9I	TTAA	5 cut(s)	27, 480, 764, 1029, 1059
TscAI	CASTG	1 cut(s)	906
TseFI	GTSAC	2 cut(s)	407, 1214
TseI	GCWGC	3 cut(s)	320, 1076, 1149
Tsp45I	GTSAC	2 cut(s)	407, 1214
TspDTI	ATGAA	8 cut(s)	207, 392, 401, 404, 570, 706, 1118, 1155
TspRI	CASTG	1 cut(s)	906
Van91I	CCANNNNNTGG	2 cut(s)	759, 849
VpaK11BI	GGWCC	2 cut(s)	805, 918
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	4 cut(s)	29, 45, 369, 766
XceI	RCATGY	2 cut(s)	266, 930
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	6 cut(s)	287, 332, 569, 723, 860, 932
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.