Rh5AG041300

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
3097102 .. 3099537
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG041300.1

Sequence Viewer

Length: 1530 bp
ATGGATGACATGTTTGTCCAACATTCTCAGAAGTTGGAGTTGTTCAGGCATGTACTGAGAAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATGTGATCGATGCCGTTCAACGGCTAGGCATTGATTATCACTTTCAACAAGAAATCGATGAAATACTTCACAAGCAGATGAATATGGTGTCTGCCCATGATGATCTTCATGAGGTTGCACTTCGCTTTCGACTACTGAGACAACAGGGTTACTTCGTGCCTGATGATGTGTTTAACAACTTCAAGGAAAGCAATGGGATGTTCAAGCAAGCTTTGGGTGAAGACATCAAGGGATTGATGAGCGTATATGAAGCTTCACATCTAGCTACAGAAGGAGAAGATACACTTGTTGAAGCTGGAAAATATAGTGCTCATCTGCTAAAGACCTCTTTGCCACATCTTGATCATCATCAGGCGAGAATTGTGGGCAATACATTGGGGAATCCTCATCACAAAAGTTTGGCCTCATTCATGGCCAGGAAGTTTTTTGTTACTTCTCAAGGAACCAATACATGGTTAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAGTATGGTCCAGTCTTTGTACCAGAATGAAATTGTTCAAATCTCCAAATGGTGGAAGGAGCTAGGATTGGCTAAGGAACTGAAGTTTGCAAGAGACCAACCACTGAAATGGTACATTTGGTCCATGGCATGCCTAGCAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTAATGAACTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATAGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATAAAAAGCATGGATGGAACGCCTTGCAATCTTTGAAAAAGACGTGGGCAAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGGCAGCTGCCAAAGTCAGAAGAGTACTTGAAGAATGGCATTGTTTCTTCTGGGGTAAATGTGGTTCTAGTCCACATTTTTTTTCTCTTGGGTCAAAACATGACCAAACAGAGTGTGGAGTTGTTGAATGACACTCCAACTATTATATCGTCCACAGCAGCAATTCTTCGACTTTGGGACGACTTGGGAAATGCAAACGATGAGAACCAGGATGGGAACGATGGGTCGTATGTAAGGTGCTACTTAGAGGAACATCAAGGCTGTTCCATTGACGAGGCGAGAGAAAGGACTGCTAATATGATTTCAGACGAATGGAAAAAGCTGAACAGAGAATTGCTCTCTCCAAATCCATTTCCAGCAACATTCAATTCGGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAGCTATGATGGAAACCAATGCCTTCCATCACTTGAAGAGTATATGAAATCAATGTTGTATGAGACTGTATCAATGTAA

Protein Analysis

509

Amino Acids

58.38

Weight (kDa)

5.37

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 4 - 145 9.5e-44 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 214 - 454 9.4e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 256 - 454 7e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 2 cut(s) 546, 636
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 4 cut(s) 54, 605, 698, 1067
AfiI CCNNNNNNNGG 3 cut(s) 114, 546, 636
AflIII ACRYGT 1 cut(s) 9
AjiI CACGTC 1 cut(s) 990
AjnI CCWGG 2 cut(s) 509, 1248
Alw21I GWGCWC 2 cut(s) 406, 756
Alw26I GTCTC 3 cut(s) 226, 672, 1508
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 495, 507
ApeKI GCWGC 5 cut(s) 863, 936, 1045, 1048, 1199
ApoI RAATTY 1 cut(s) 553
Asp700I GAANNNNTTC 3 cut(s) 159, 618, 825
AspS9I GGNCC 3 cut(s) 592, 705, 1438
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 3 cut(s) 592, 705, 1438
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 1 cut(s) 509
BanII GRGCYC 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 406, 756
BbvI GCAGC 5 cut(s) 850, 923, 1035, 1057, 1211
BccI CCATC 7 cut(s) 773, 846, 954, 1247, 1256, 1454, 1486
BceAI ACGGC 2 cut(s) 92, 131
BciT130I CCWGG 2 cut(s) 511, 1250
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 226, 672, 1508
BfaI CTAG 6 cut(s) 74, 119, 356, 647, 719, 1109
BfmI CTRYAG 2 cut(s) 360, 867
BisI GCNGC 5 cut(s) 864, 937, 1046, 1049, 1200
BlsI GCNGC 5 cut(s) 865, 938, 1047, 1050, 1201
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 2 cut(s) 511, 1250
Bme18I GGWCC 3 cut(s) 592, 705, 1438
BmgBI CACGTC 1 cut(s) 990
BmgT120I GGNCC 3 cut(s) 592, 705, 1438
BmiI GGNNCC 3 cut(s) 538, 811, 1440
BmrFI CCNGG 2 cut(s) 511, 1250
BmsI GCATC 3 cut(s) 67, 94, 1046
BpiI GAAGAC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 1362, 1394
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 516
Bsa29I ATCGAT 2 cut(s) 102, 150
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 546, 636
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 2 cut(s) 292, 1012
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 2 cut(s) 511, 1250
BseCI ATCGAT 2 cut(s) 102, 150
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 4 cut(s) 10, 297, 965, 1258
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 3 cut(s) 114, 546, 636
BseMI GCAATG 2 cut(s) 292, 1012
BseMII CTCAG 3 cut(s) 41, 47, 221
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 755
BseXI GCAGC 5 cut(s) 850, 923, 1035, 1057, 1211
BshFI GGCC 2 cut(s) 497, 509
BshVI ATCGAT 2 cut(s) 102, 150
BsiHKAI GWGCWC 2 cut(s) 406, 756
BslFI GGGAC 2 cut(s) 1232, 1424
BslI CCNNNNNNNGG 3 cut(s) 114, 546, 636
BsmAI GTCTC 3 cut(s) 226, 672, 1508
BsmFI GGGAC 2 cut(s) 1232, 1424
BsnI GGCC 2 cut(s) 497, 509
Bso31I GGTCTC 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 406, 756
Bsp143I GATC 4 cut(s) 99, 196, 436, 724
Bsp19I CCATGG 1 cut(s) 708
BspANI GGCC 2 cut(s) 497, 509
BspCNI CTCAG 3 cut(s) 40, 48, 222
BspDI ATCGAT 2 cut(s) 102, 150
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 538, 811, 1440
BspPI GGATC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 672
BsrDI GCAATG 2 cut(s) 292, 1012
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 4 cut(s) 99, 196, 436, 724
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 2 cut(s) 511, 1250
Bst4CI ACNGT 1 cut(s) 1519
Bst6I CTCTTC 3 cut(s) 836, 1056, 1482
BstC8I GCNNGC 2 cut(s) 303, 715
BstDEI CTNAG 5 cut(s) 27, 56, 230, 657, 1285
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 4 cut(s) 10, 297, 965, 1258
BstKTI GATC 4 cut(s) 102, 199, 439, 727
BstMAI GTCTC 3 cut(s) 226, 672, 1508
BstMBI GATC 4 cut(s) 99, 196, 436, 724
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNI CCWGG 2 cut(s) 511, 1250
BstNSI RCATGY 3 cut(s) 13, 53, 717
BstSCI CCNGG 2 cut(s) 509, 1248
BstSFI CTRYAG 2 cut(s) 360, 867
BstV1I GCAGC 5 cut(s) 850, 923, 1035, 1057, 1211
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 693
BstYI RGATCY 1 cut(s) 724
Bsu15I ATCGAT 2 cut(s) 102, 150
BsuRI GGCC 2 cut(s) 497, 509
BsuTUI ATCGAT 2 cut(s) 102, 150
BtgI CCRYGG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 990
BtsCI GGATG 4 cut(s) 10, 297, 965, 1258
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 303, 715
CaiI CAGNNNCTG 1 cut(s) 842
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 592, 705, 1438
ClaI ATCGAT 2 cut(s) 102, 150
Csp6I GTAC 4 cut(s) 53, 604, 697, 1066
CviQI GTAC 4 cut(s) 53, 604, 697, 1066
DdeI CTNAG 5 cut(s) 27, 56, 230, 657, 1285
DpnI GATC 4 cut(s) 101, 198, 438, 726
DpnII GATC 4 cut(s) 99, 196, 436, 724
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 3 cut(s) 836, 1056, 1482
EarI CTCTTC 3 cut(s) 836, 1056, 1482
Ecl136II GAGCTC 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 672
Eco47I GGWCC 3 cut(s) 592, 705, 1438
Eco53kI GAGCTC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 509, 1248
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 708
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 884, 916
FaqI GGGAC 2 cut(s) 1232, 1424
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 5 cut(s) 864, 937, 1046, 1049, 1200
FokI GGATG 4 cut(s) 17, 304, 972, 1265
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 5 cut(s) 864, 937, 1046, 1049, 1200
FspBI CTAG 6 cut(s) 74, 119, 356, 647, 719, 1109
GluI GCNGC 5 cut(s) 864, 937, 1046, 1049, 1200
HaeIII GGCC 2 cut(s) 497, 509
HindIII AAGCTT 2 cut(s) 303, 345
HinfI GANTC 1 cut(s) 475
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 1114, 1194
Hpy188I TCNGA 4 cut(s) 30, 739, 1060, 1348
Hpy188III TCNNGA 2 cut(s) 203, 434
Hpy8I GTNNAC 2 cut(s) 1114, 1194
HpyAV CCTTC 4 cut(s) 80, 359, 634, 1484
HpyCH4III ACNGT 1 cut(s) 1519
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 7 cut(s) 212, 674, 939, 973, 1005, 1010, 1235
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 5 cut(s) 27, 56, 230, 657, 1285
HpySE526I ACGT 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 99, 196, 436, 724
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 5 cut(s) 850, 923, 1035, 1057, 1211
LweI GCATC 3 cut(s) 67, 94, 1046
MaeI CTAG 6 cut(s) 74, 119, 356, 647, 719, 1109
MaeII ACGT 1 cut(s) 989
MaeIII GTNAC 2 cut(s) 242, 523
MalI GATC 4 cut(s) 101, 198, 438, 726
MboI GATC 4 cut(s) 99, 196, 436, 724
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 406, 756
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 6 cut(s) 453, 553, 615, 1203, 1373, 1408
MluNI TGGCCA 1 cut(s) 509
MmeI TCCRAC 3 cut(s) 15, 43, 1202
MnlI CCTC 8 cut(s) 199, 430, 489, 508, 733, 738, 1282, 1309
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 1012
MroXI GAANNNNTTC 3 cut(s) 159, 618, 825
MscI TGGCCA 1 cut(s) 509
MseI TTAA 5 cut(s) 267, 551, 816, 846, 1422
MslI CAYNNNNRTG 1 cut(s) 691
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 936, 1048
MspR9I CCNGG 2 cut(s) 511, 1250
MvaI CCWGG 2 cut(s) 511, 1250
MwoI GCNNNNNNNGC 1 cut(s) 719
NcoI CCATGG 1 cut(s) 708
NdeII GATC 4 cut(s) 99, 196, 436, 724
NlaIV GGNNCC 3 cut(s) 538, 811, 1440
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 3 cut(s) 13, 53, 717
PaeI GCATGC 1 cut(s) 717
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 9
PdmI GAANNNNTTC 3 cut(s) 159, 618, 825
PfeI GAWTC 1 cut(s) 475
PflMI CCANNNNNTGG 2 cut(s) 546, 636
PkrI GCNGC 5 cut(s) 865, 938, 1047, 1050, 1201
PscI ACATGT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 509, 1248
PspGI CCWGG 2 cut(s) 509, 1248
PspN4I GGNNCC 3 cut(s) 538, 811, 1440
PspPI GGNCC 3 cut(s) 592, 705, 1438
PsrI GAACNNNNNNTAC 2 cut(s) 1089, 1121
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 2 cut(s) 936, 1048
RsaI GTAC 4 cut(s) 54, 605, 698, 1067
RsaNI GTAC 4 cut(s) 53, 604, 697, 1066
RseI CAYNNNNRTG 1 cut(s) 691
SacI GAGCTC 1 cut(s) 756
SaqAI TTAA 5 cut(s) 267, 551, 816, 846, 1422
SatI GCNGC 5 cut(s) 864, 937, 1046, 1049, 1200
Sau3AI GATC 4 cut(s) 99, 196, 436, 724
Sau96I GGNCC 3 cut(s) 592, 705, 1438
ScaI AGTACT 1 cut(s) 1067
ScrFI CCNGG 2 cut(s) 511, 1250
SduI GDGCHC 2 cut(s) 406, 756
SfaNI GCATC 3 cut(s) 67, 94, 1046
SfcI CTRYAG 2 cut(s) 360, 867
SinI GGWCC 3 cut(s) 592, 705, 1438
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SphI GCATGC 1 cut(s) 717
Sse9I AATT 6 cut(s) 453, 553, 615, 1203, 1373, 1408
SspMI CTAG 6 cut(s) 74, 119, 356, 647, 719, 1109
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 509, 1248
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 1 cut(s) 1519
TaiI ACGT 1 cut(s) 992
TaqI TCGA 4 cut(s) 102, 150, 223, 1210
TasI AATT 6 cut(s) 453, 553, 615, 1203, 1373, 1408
TatI WGTACW 2 cut(s) 52, 1065
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 5 cut(s) 267, 551, 816, 846, 1422
Tru9I TTAA 5 cut(s) 267, 551, 816, 846, 1422
TscAI CASTG 1 cut(s) 693
TseI GCWGC 5 cut(s) 863, 936, 1045, 1048, 1199
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 2 cut(s) 546, 636
VpaK11BI GGWCC 3 cut(s) 592, 705, 1438
XapI RAATTY 1 cut(s) 553
XceI RCATGY 3 cut(s) 13, 53, 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XmnI GAANNNNTTC 3 cut(s) 159, 618, 825
XspI CTAG 6 cut(s) 74, 119, 356, 647, 719, 1109
ZrmI AGTACT 1 cut(s) 1067
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.