Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Reverse (-)

30693006 .. 30693793

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGTGTGTATGAAGCTTCACAACTAAGCATGGAAGGAGAAGATGCACTTGATGAAGCTGGAAAATTGAGCGGTCATCTCCTAAATAGATCACTGTCATATCTTGGTCCTCATGAGGCCAGACTTGTGGAGAACACACTGGGGTGCCCCCACCACCGAAGCTTGGCCGCATTCATGGCCAAGAACTTTTTTCTTTCTAATTCCCAAGCTGGCGTGAATAATAGATGGCTAAATATGCTACAAGAAGTGGCAAAAACGGATTTTAATTTGGTTCAGTCCCTACACCACAAGGAGATTGTTCAAATTTCCAAGTGGTGGAAAGAGCTGGGATTGACAAGGGAGCTGAAGTTTGCAAGAGACGAGCCAGTTAAATGGTACATTTGGTCCATGGCATGCCTAACAGATCCAAACTTGTCAGAGGAGAGGATTCAGCTCACAAAACCTATCTCATTCATCTATTTGATTGATGACATTTTCGATGTTTATGGGACGCTTGATGAACTCACTCTCTTCACTGAGGCTGTCAATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

178

Amino Acids

20.36

Weight (kDa)

5.34

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccB7I	CCANNNNNTGG	1 cut(s)	315
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	2 cut(s)	72, 168
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	165, 177
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	163, 315
AgsI	TTSAA	1 cut(s)	302
AleI	CACNNNNGTG	1 cut(s)	142
AluBI	AGCT	7 cut(s)	17, 59, 162, 209, 325, 343, 433
AluI	AGCT	7 cut(s)	17, 59, 162, 209, 325, 343, 433
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	117, 165, 177
ApoI	RAATTY	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	107, 384
AvaII	GGWCC	2 cut(s)	107, 384
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	144
BccI	CCATC	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	351
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	107, 384
BmgT120I	GGNCC	2 cut(s)	107, 384
BmiI	GGNNCC	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 315
Bse1I	ACTGG	2 cut(s)	144, 365
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	163, 315
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	144, 365
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	3 cut(s)	119, 167, 179
BshNI	GGYRCC	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	262, 502
BslI	CCNNNNNNNGG	2 cut(s)	163, 315
BsmAI	GTCTC	1 cut(s)	351
BsmBI	CGTCTC	1 cut(s)	351
BsmFI	GGGAC	2 cut(s)	262, 502
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	119, 167, 179
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	89, 403
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	2 cut(s)	72, 168
BspANI	GGCC	3 cut(s)	119, 167, 179
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	144, 365
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	89, 403
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	211, 394
BstDEI	CTNAG	2 cut(s)	26, 516
BstDSI	CCRYGG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	92, 406
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	89, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 235
BstNSI	RCATGY	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	2 cut(s)	127, 372
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	119, 167, 179
BtgI	CCRYGG	1 cut(s)	387
BtsIMutI	CAGTG	3 cut(s)	92, 137, 513
Cac8I	GCNNGC	2 cut(s)	211, 394
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	107, 384
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	5 cut(s)	31, 113, 175, 388, 393
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	26, 516
DpnI	GATC	2 cut(s)	91, 405
DpnII	GATC	2 cut(s)	89, 403
EaeI	YGGCCR	2 cut(s)	165, 177
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	107, 384
Eco57I	CTGAAG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	351
FaeI	CATG	5 cut(s)	34, 116, 178, 391, 396
FaiI	YATR	9 cut(s)	12, 32, 100, 114, 176, 236, 389, 394, 486
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	2 cut(s)	262, 502
FatI	CATG	5 cut(s)	30, 112, 174, 387, 392
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	3 cut(s)	119, 167, 179
HgaI	GACGC	1 cut(s)	499
Hin1II	CATG	5 cut(s)	34, 116, 178, 391, 396
HindIII	AAGCTT	2 cut(s)	15, 160
HinfI	GANTC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	47, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 235
HpyF3I	CTNAG	2 cut(s)	26, 516
Hsp92II	CATG	5 cut(s)	34, 116, 178, 391, 396
Kzo9I	GATC	2 cut(s)	89, 403
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	6 cut(s)	45, 125, 133, 195, 311, 378
LweI	GCATC	1 cut(s)	34
MalI	GATC	2 cut(s)	91, 405
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	89, 403
MboII	GAAGA	2 cut(s)	53, 502
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	4 cut(s)	65, 199, 265, 303
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	5 cut(s)	109, 120, 412, 417, 511
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	2 cut(s)	264, 369
MslI	CAYNNNNRTG	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	176, 235
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	89, 403
NlaIII	CATG	5 cut(s)	34, 116, 178, 391, 396
NlaIV	GGNNCC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	396
OliI	CACNNNNGTG	1 cut(s)	142
PaeI	GCATGC	1 cut(s)	396
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	427
PflMI	CCANNNNNTGG	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	107, 384
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	264, 369
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	89, 403
Sau96I	GGNCC	2 cut(s)	107, 384
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	19, 61, 164, 211, 327, 345, 435, 445, 533
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	2 cut(s)	107, 384
SmiMI	CAYNNNNRTG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	396
Sse9I	AATT	4 cut(s)	65, 199, 265, 303
SsiI	CCGC	2 cut(s)	72, 168
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	477
TasI	AATT	4 cut(s)	65, 199, 265, 303
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	264, 369
Tru9I	TTAA	2 cut(s)	264, 369
TscAI	CASTG	3 cut(s)	99, 144, 520
TspDTI	ATGAA	5 cut(s)	27, 69, 163, 442, 513
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	99, 144, 520
Van91I	CCANNNNNTGG	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	107, 384
XapI	RAATTY	1 cut(s)	303
XceI	RCATGY	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.