Rw5G004010

(3S,6E)-nerolidol synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
4038988 .. 4042024
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G004010.1

Sequence Viewer

Length: 1563 bp
ATGGATGACATGTTTGTCCAACATTCTCAGAAGTTGGAGTTGTTCAGGCATGTACTGAGAAATGTAGCAGAGCTAGATGCCCTTGAAGGTTTGAATGTGATCGATGCCGTTCAACGGCTAGGTATCGATTACCACTTTCAACAAGAAATCGACGAAATTCTGCACAAACAGATGAATAGTATATCTGTTCATGGTGACCTTCATGAGGTTACACTTCGCTTTCGACTACTAAGACAACGGGGTTACTTGGTGCCTGATGATGTGTTTAACAACTTCAAGGAAAGCAATGGGCTGTTCAAGCAAGCTTTGGGTGAAGACATCAAGGGATTGATGAGCTTATATGAAGCTTCACATCTAGGTACAGAAGGAGAAGATACACTTGTTGAAGCTGGAAAATATAGTGCCCATCTGCTAAAGACCTCTTTGCCACATCTTGATCATCATCAAGCCAGAATTGTGGGCAATACATTGGGGAATCCTCATCACAAAAGCTTGGCCTCATTCATGGCTAGGAACTTTTTTGTTACTTCTCAAGGAACCAATACATGGTCAAATTTGCTAAAAGAAGTAGCAAAAACAGATTTCAGTATGGTCCAGTCTTTGTACCAGAATGAAATAGTTCACATCTCCAAATGGTGGAAGGAGCTAGGATTGGCAAAGGAACTGAAGTTTGCAAGAGACCAACCACTGAAATGGTACATTTGGTCCATGGCATGCCTAGCAGATCCAAAGTTATCAGAGGAGAGGGTTGAGCTCACAAAACCCATCTCATTTATCTATTTGATAGATGACATTTTTGATGTTTATGGAACCCTTAATGACCTCATTCTCTTCACAGAAGCTGTTAATAGATGGGATATTGCTGCTATAGACCATTTACCAGACTACATGAAGATATGCTTCAAGGCTCTCTATGATATGACTAATGAAATCAGCTGCAAGGTCTATAAGAAGCATGGATGGAACCCCTTGCAATCTTTGAAAAAGACGTGGGCAAGTCTTTGCAATGCATTTTTGGTGGAAGCAAAATGGTTCGCATCTGGACAGTTGCCAAAGTCAGAAGAGTACTTGAAGAATGGCATTGTTTCTTCTGGGGTAAATGTGGTTCTTGTCCACATTTTTTTTCTCTTAGGTCAAAATATAACCAAACAGAGTGTGGAGTTGTTGAATGACACTCCAACTATTATATCGTCCACAGCAGCAATTCTTCGACTTTGGGACGACTTGGGAAGTGCTAAGGATGAGAACCAGGATGGGAACGATGGATCGTATAGTGGATATTATATTTCCAACCAAGAAATGAAAGAAAAGTGCTACTTAGAGGAACATCAAGGCTGTTCCATTGACGAGGCGAGAGAAAAGACTGTTAATATGATTTCAGACGAATGGAAGAAGCTGAACAGAGAATTGCTCTCTCCAAATCCATTTCCAGCAACATTCAATTCGGCTTCCCTTAATCTCGCAAGAATGGTCCCCCTGATGTATAGCTATGATGGAAACCAATGCCTTCCATCACTTGAAGAGTATATGAAATCAATGTTGTATGAGACTGTATCAATGTAA

Protein Analysis

520

Amino Acids

59.58

Weight (kDa)

5.48

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 4 - 145 1e-42 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 214 - 465 2.9e-78 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 256 - 465 4.2e-49 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 2 cut(s) 546, 636
AclWI GGATC 2 cut(s) 719, 1273
AcsI RAATTY 2 cut(s) 156, 553
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 5 cut(s) 54, 361, 605, 698, 1067
AfiI CCNNNNNNNGG 4 cut(s) 114, 205, 546, 636
AflIII ACRYGT 1 cut(s) 9
AjiI CACGTC 1 cut(s) 990
AjnI CCWGG 1 cut(s) 1248
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 2 cut(s) 672, 1541
AlwI GGATC 2 cut(s) 719, 1273
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 863, 936, 1199
ApoI RAATTY 2 cut(s) 156, 553
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 3 cut(s) 592, 705, 1471
AsuHPI GGTGA 2 cut(s) 206, 323
AvaII GGWCC 3 cut(s) 592, 705, 1471
BaeGI GKGCMC 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 3 cut(s) 850, 923, 1211
BccI CCATC 8 cut(s) 414, 773, 846, 954, 1247, 1256, 1487, 1519
BceAI ACGGC 2 cut(s) 92, 131
BciT130I CCWGG 1 cut(s) 1250
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 672, 1541
BfaI CTAG 6 cut(s) 74, 119, 356, 510, 647, 719
BfmI CTRYAG 1 cut(s) 867
BisI GCNGC 3 cut(s) 864, 937, 1200
BlsI GCNGC 3 cut(s) 865, 938, 1201
BmcAI AGTACT 1 cut(s) 1067
Bme1390I CCNGG 1 cut(s) 1250
Bme18I GGWCC 3 cut(s) 592, 705, 1471
BmgBI CACGTC 1 cut(s) 990
BmgT120I GGNCC 3 cut(s) 592, 705, 1471
BmiI GGNNCC 5 cut(s) 252, 538, 811, 965, 1473
BmrFI CCNGG 1 cut(s) 1250
BmsI GCATC 3 cut(s) 67, 94, 1046
BpiI GAAGAC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 1395, 1427
Bpu10I CCTNAGC 1 cut(s) 1236
BpuEI CTTGAG 1 cut(s) 516
Bsa29I ATCGAT 2 cut(s) 102, 126
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 672
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 205, 546, 636
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 2 cut(s) 292, 1012
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 1250
BseCI ATCGAT 2 cut(s) 102, 126
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 4 cut(s) 10, 965, 1246, 1258
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 4 cut(s) 114, 205, 546, 636
BseMI GCAATG 2 cut(s) 292, 1012
BseMII CTCAG 2 cut(s) 41, 47
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 755
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 3 cut(s) 850, 923, 1211
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 2 cut(s) 102, 126
BsiHKAI GWGCWC 1 cut(s) 756
BslFI GGGAC 2 cut(s) 1232, 1457
BslI CCNNNNNNNGG 4 cut(s) 114, 205, 546, 636
BsmAI GTCTC 2 cut(s) 672, 1541
BsmFI GGGAC 2 cut(s) 1232, 1457
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 672
Bsp1286I GDGCHC 2 cut(s) 406, 756
Bsp143I GATC 4 cut(s) 99, 436, 724, 1265
Bsp19I CCATGG 1 cut(s) 708
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 40, 48
BspDI ATCGAT 2 cut(s) 102, 126
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 5 cut(s) 252, 538, 811, 965, 1473
BspPI GGATC 2 cut(s) 719, 1273
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 672
BsrDI GCAATG 2 cut(s) 292, 1012
BsrI ACTGG 1 cut(s) 595
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 4 cut(s) 99, 436, 724, 1265
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 3 cut(s) 1047, 1366, 1552
Bst6I CTCTTC 3 cut(s) 836, 1056, 1515
BstC8I GCNNGC 2 cut(s) 303, 715
BstDEI CTNAG 6 cut(s) 27, 56, 230, 1129, 1236, 1318
BstDSI CCRYGG 1 cut(s) 708
BstEII GGTNACC 1 cut(s) 194
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 4 cut(s) 10, 965, 1246, 1258
BstKTI GATC 4 cut(s) 102, 439, 727, 1268
BstMAI GTCTC 2 cut(s) 672, 1541
BstMBI GATC 4 cut(s) 99, 436, 724, 1265
BstMWI GCNNNNNNNGC 2 cut(s) 298, 719
BstNI CCWGG 1 cut(s) 1250
BstNSI RCATGY 3 cut(s) 13, 53, 717
BstPI GGTNACC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 1248
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 850, 923, 1211
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 2 cut(s) 457, 693
BstYI RGATCY 1 cut(s) 724
Bsu15I ATCGAT 2 cut(s) 102, 126
BsuRI GGCC 1 cut(s) 497
BsuTUI ATCGAT 2 cut(s) 102, 126
BtgI CCRYGG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 990
BtsCI GGATG 4 cut(s) 10, 965, 1246, 1258
BtsIMutI CAGTG 1 cut(s) 686
Cac8I GCNNGC 2 cut(s) 303, 715
CaiI CAGNNNCTG 1 cut(s) 842
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 592, 705, 1471
ClaI ATCGAT 2 cut(s) 102, 126
Csp6I GTAC 5 cut(s) 53, 360, 604, 697, 1066
CviQI GTAC 5 cut(s) 53, 360, 604, 697, 1066
DdeI CTNAG 6 cut(s) 27, 56, 230, 1129, 1236, 1318
DpnI GATC 4 cut(s) 101, 438, 726, 1267
DpnII GATC 4 cut(s) 99, 436, 724, 1265
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 3 cut(s) 836, 1056, 1515
EarI CTCTTC 3 cut(s) 836, 1056, 1515
Ecl136II GAGCTC 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 672
Eco47I GGWCC 3 cut(s) 592, 705, 1471
Eco53kI GAGCTC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 686
Eco91I GGTNACC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 754
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 1248
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 708
FalI AAGNNNNNCTT 6 cut(s) 363, 395, 884, 916, 1301, 1333
FaqI GGGAC 2 cut(s) 1232, 1457
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 864, 937, 1200
FokI GGATG 4 cut(s) 17, 972, 1253, 1265
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 3 cut(s) 864, 937, 1200
FspBI CTAG 6 cut(s) 74, 119, 356, 510, 647, 719
GluI GCNGC 3 cut(s) 864, 937, 1200
HaeIII GGCC 1 cut(s) 497
HindIII AAGCTT 3 cut(s) 303, 345, 490
HinfI GANTC 1 cut(s) 475
HphI GGTGA 2 cut(s) 206, 323
Hpy166II GTNNAC 3 cut(s) 622, 1114, 1194
Hpy188I TCNGA 4 cut(s) 30, 739, 1060, 1381
Hpy188III TCNNGA 3 cut(s) 203, 434, 1041
Hpy8I GTNNAC 3 cut(s) 622, 1114, 1194
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 5 cut(s) 80, 209, 359, 634, 1517
HpyCH4III ACNGT 3 cut(s) 1047, 1366, 1552
HpyCH4IV ACGT 1 cut(s) 989
HpyCH4V TGCA 6 cut(s) 163, 674, 939, 973, 1005, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 719
HpyF3I CTNAG 6 cut(s) 27, 56, 230, 1129, 1236, 1318
HpySE526I ACGT 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 99, 436, 724, 1265
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 3 cut(s) 850, 923, 1211
LweI GCATC 3 cut(s) 67, 94, 1046
MaeI CTAG 6 cut(s) 74, 119, 356, 510, 647, 719
MaeII ACGT 1 cut(s) 989
MaeIII GTNAC 4 cut(s) 194, 208, 242, 523
MalI GATC 4 cut(s) 101, 438, 726, 1267
MboI GATC 4 cut(s) 99, 436, 724, 1265
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 406, 756
MluCI AATT 6 cut(s) 156, 453, 553, 1203, 1406, 1441
MmeI TCCRAC 4 cut(s) 15, 43, 1202, 1314
MnlI CCTC 9 cut(s) 199, 430, 489, 508, 733, 738, 833, 1315, 1342
Mph1103I ATGCAT 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 5 cut(s) 267, 816, 846, 1368, 1455
MslI CAYNNNNRTG 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 936
MspR9I CCNGG 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 1250
MwoI GCNNNNNNNGC 2 cut(s) 298, 719
NcoI CCATGG 1 cut(s) 708
NdeII GATC 4 cut(s) 99, 436, 724, 1265
NlaIV GGNNCC 5 cut(s) 252, 538, 811, 965, 1473
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 3 cut(s) 13, 53, 717
PaeI GCATGC 1 cut(s) 717
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 1 cut(s) 475
PflMI CCANNNNNTGG 2 cut(s) 546, 636
PkrI GCNGC 3 cut(s) 865, 938, 1201
PscI ACATGT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 1248
PspEI GGTNACC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 5 cut(s) 252, 538, 811, 965, 1473
PspPI GGNCC 3 cut(s) 592, 705, 1471
PsrI GAACNNNNNNTAC 2 cut(s) 1089, 1121
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 936
RsaI GTAC 5 cut(s) 54, 361, 605, 698, 1067
RsaNI GTAC 5 cut(s) 53, 360, 604, 697, 1066
RseI CAYNNNNRTG 1 cut(s) 691
SacI GAGCTC 1 cut(s) 756
SaqAI TTAA 5 cut(s) 267, 816, 846, 1368, 1455
SatI GCNGC 3 cut(s) 864, 937, 1200
Sau3AI GATC 4 cut(s) 99, 436, 724, 1265
Sau96I GGNCC 3 cut(s) 592, 705, 1471
ScaI AGTACT 1 cut(s) 1067
ScrFI CCNGG 1 cut(s) 1250
SduI GDGCHC 2 cut(s) 406, 756
SfaNI GCATC 3 cut(s) 67, 94, 1046
SfcI CTRYAG 1 cut(s) 867
SinI GGWCC 3 cut(s) 592, 705, 1471
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SphI GCATGC 1 cut(s) 717
Sse9I AATT 6 cut(s) 156, 453, 553, 1203, 1406, 1441
SspMI CTAG 6 cut(s) 74, 119, 356, 510, 647, 719
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 1 cut(s) 1248
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 1047, 1366, 1552
TaiI ACGT 1 cut(s) 992
TaqI TCGA 5 cut(s) 102, 126, 150, 223, 1210
TasI AATT 6 cut(s) 156, 453, 553, 1203, 1406, 1441
TatI WGTACW 2 cut(s) 52, 1065
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 5 cut(s) 267, 816, 846, 1368, 1455
Tru9I TTAA 5 cut(s) 267, 816, 846, 1368, 1455
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 3 cut(s) 863, 936, 1199
Tsp45I GTSAC 1 cut(s) 194
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 2 cut(s) 546, 636
VpaK11BI GGWCC 3 cut(s) 592, 705, 1471
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 156, 553
XceI RCATGY 3 cut(s) 13, 53, 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 6 cut(s) 74, 119, 356, 510, 647, 719
ZrmI AGTACT 1 cut(s) 1067
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.