Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000720

Physical Location & Seq

Genomic Coordinates Reverse (-)

27512730 .. 27513410

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCAGGCCTAACAAACCCAAACTTGTCAGATGAGAGGATTGAGTTCACAAAATCTGTATCATTTATCTATTTGATTGATGACATTTTTTATGTTTACGGGACGCTTGATGATCTCATTTTCTTCACGGAGGTTGTTAATGGTAAATCGTTATGCTGCAGATGGGAAATTGGTGCTATAGAACACTTACCGGACTACATGAAGATATGCTTCAAAGCTCTTTATGATATGACGGATGAAATCAGCTGTAAGGTTTATGAAAAGCACGGATTGAACCCGTTGCATTCCCTAAAGAAGACGGTATATATACAAATCGTAGTATTGTGGGCGAGTCTGTGCAATGCATTTTTAGTGGAAGCAAAATGGTTCAAATCCGGGCACTTGCCTAGGGCTGAAGAGTACTTGAAGAATGGAATTATTTCTTCTGGGGTGAATGTGATGTTGGTCCACATTTTCTTTCTCATGGGTGAAGGTATAACCAAACAAAGTGTGAAGCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

6.2

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61680 AT1G61680
fragaria_vesca	FvH4_3g03042 FvH4_3g03042 FvH4_3g03045 FvH4_3g03061 FvH4_3g03072 FvH4_3g03072 FvH4_3g03081 FvH4_3g03150 FvH4_3g03150
malus_domestica	MD05G1334800.v1.1 MD05G1335000.v1.1 MD05G1335100.v1.1 MD10G1309700.v1.1 MD10G1309800.v1.1 MD10G1309900.v1.1 MD10G1310200.v1.1 MD10G1310300.v1.1 MD10G1310500.v1.1 MD10G1310600.v1.1
prunus_persica	Prupe.4G030300_v2.0.a1 Prupe.4G030400_v2.0.a1
pyrus_communis	pycom05g30640 pycom10g26110 pycom10g26140 pycom10g26150 pycom10g26160
rosa_chinensis	RchiOBHm_Chr5g0004711 RchiOBHm_Chr5g0004731 RchiOBHm_Chr5g0004761 RchiOBHm_Chr5g0004801
rosa_laevigata	RLG00000030230 RLG00000031254 RLG00000031255 RLG00000031257 RLG00000031260
rosa_multiflora	Rmu_co8094102.1_g000001 Rmu_sc0002210.1_g000005 Rmu_sc0002210.1_g000008 Rmu_sc0002210.1_g000009 Rmu_sc0008308.1_g000013 Rmu_sc0010871.1_g000028 Rmu_sc0030338.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070820 Rroxscaffold_1G00070840 Rroxscaffold_1G00070850
rosa_rugosa	Rorug04G0413500 Rorug04G0413500 Rorug04G0413700 Rorug04G0413800 Rorug04G0413900 Rorug05G0165300
rosa_samantha	Rh5AG041200 Rh5AG041300 Rh5BG040900 Rh5BG041000 Rh5BG041100 Rh5BG041300 Rh5CG044700 Rh5CG044800 Rh5CG045200 Rh5DG040900 Rh5DG041000 Rh5DG041200 Rh5DG041700 Rh5DG265100
rosa_wichuraiana	Rw5G003960 Rw5G003980 Rw5G003990 Rw5G004000 Rw5G004010 Rw5G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	214, 274, 370, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	218, 246
AluI	AGCT	2 cut(s)	218, 246
Aor51HI	AGCGCT	1 cut(s)	497
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	418
AspA2I	CCTAGG	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	442, 479
AvaII	GGWCC	1 cut(s)	445
AvrII	CCTAGG	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	376
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	2 cut(s)	157, 177
BfoI	RGCGCY	1 cut(s)	499
BisI	GCNGC	1 cut(s)	157
BlnI	CCTAGG	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	191, 375
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	157, 177
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	143
BstV2I	GAAGAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	2 cut(s)	199, 463
CviJI	RGCY	4 cut(s)	9, 218, 246, 392
CviKI_1	RGCY	4 cut(s)	9, 218, 246, 392
CviQI	GTAC	1 cut(s)	400
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	445
Eco47III	AGCGCT	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	202, 466
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	198, 462
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	191, 375
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	202, 466
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	191, 375
HphI	GGTGA	2 cut(s)	442, 479
Hpy166II	GTNNAC	3 cut(s)	48, 97, 448
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	3 cut(s)	48, 97, 448
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	4 cut(s)	159, 283, 339, 344
Hsp92II	CATG	2 cut(s)	202, 466
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	204, 388, 411
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	387
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	6 cut(s)	115, 214, 307, 407, 414, 418
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	168, 414
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	30, 124
Mph1103I	ATGCAT	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	2 cut(s)	191, 375
MspR9I	CCNGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	202, 466
NsiI	ATGCAT	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	9
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	5 cut(s)	135, 220, 248, 255, 475
SfcI	CTRYAG	2 cut(s)	157, 177
SinI	GGWCC	1 cut(s)	445
Sse9I	AATT	2 cut(s)	168, 414
SseBI	AGGCCT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	301
TasI	AATT	2 cut(s)	168, 414
TatI	WGTACW	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	3 cut(s)	215, 252, 273
TspGWI	ACGGA	3 cut(s)	143, 248, 282
VpaK11BI	GGWCC	1 cut(s)	445
XmaJI	CCTAGG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.